CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 424 & Codon = gtT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12424V424VV4816VsyngtGgtT393736150.91821214710-14712

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12424V424VgtGgtT36153937All0.000691
ORF1ab/nsp12424V424VgtGgtT13251328AY.1030.008227
ORF1ab/nsp12424V424VgtGgtT364388B.1.1.70.000326
ORF1ab/nsp12424V424VgtGgtT353367AY.40.000549
ORF1ab/nsp12424V424VgtGgtT97248P.10.001528
ORF1ab/nsp12424V424VgtGgtT196198AY.440.001193
ORF1ab/nsp12424V424VgtGgtT126137B.1.617.20.000474
ORF1ab/nsp12424V424VgtGgtT9999C.370.01149
ORF1ab/nsp12424V424VgtGgtT9396AY.430.000412
ORF1ab/nsp12424V424VgtGgtT4963B.10.000449
ORF1ab/nsp12424V424VgtGgtT5051B.1.20.00044
ORF1ab/nsp12424V424VgtGgtT4141B.1.177.460.037649
ORF1ab/nsp12424V424VgtGgtT3340AY.250.000198
ORF1ab/nsp12424V424VgtGgtT3737B.1.36.220.044686
ORF1ab/nsp12424V424VgtGgtT3132B.1.1.2840.003329
ORF1ab/nsp12424V424VgtGgtT3030AY.1020.000795
ORF1ab/nsp12424V424VgtGgtT2929AY.340.002812
ORF1ab/nsp12424V424VgtGgtT2929B.1.1.390.014781
ORF1ab/nsp12424V424VgtGgtT2829B.1.1770.000369
ORF1ab/nsp12424V424VgtGgtT1026AY.4.20.000217
ORF1ab/nsp12424V424VgtGgtT2123AY.390.000519
ORF1ab/nsp12424V424VgtGgtT723AY.50.000145
ORF1ab/nsp12424V424VgtGgtT2222B.1.5950.005741
ORF1ab/nsp12424V424VgtGgtT2121AY.260.000595
ORF1ab/nsp12424V424VgtGgtT2121B.1.1.4640.030928
ORF1ab/nsp12424V424VgtGgtT1919AY.590.010064
ORF1ab/nsp12424V424VgtGgtT1919B.1.4060.115152
ORF1ab/nsp12424V424VgtGgtT917B.1.1.5260.031915
ORF1ab/nsp12424V424VgtGgtT1717B.1.1600.00053
ORF1ab/nsp12424V424VgtGgtT1515B.1.5610.005955
ORF1ab/nsp12424V424VgtGgtT1214B.1.10.000218
ORF1ab/nsp12424V424VgtGgtT1212AY.98.10.000581
ORF1ab/nsp12424V424VgtGgtT1212B.1.4270.000606
ORF1ab/nsp12424V424VgtGgtT1111AY.60.000452
ORF1ab/nsp12424V424VgtGgtT1010AZ.30.015198
ORF1ab/nsp12424V424VgtGgtT1010B.1.360.001459
ORF1ab/nsp12424V424VgtGgtT89AY.230.000558
ORF1ab/nsp12424V424VgtGgtT99AY.290.000142
ORF1ab/nsp12424V424VgtGgtT99B.1.3510.000268
ORF1ab/nsp12424V424VgtGgtT99B.400.003279
ORF1ab/nsp12424V424VgtGgtT69P.1.140.000287
ORF1ab/nsp12424V424VgtGgtT88AY.140.000704
ORF1ab/nsp12424V424VgtGgtT88AY.610.000838
ORF1ab/nsp12424V424VgtGgtT88AY.90.000541
ORF1ab/nsp12424V424VgtGgtT88B.1.1.2220.001632
ORF1ab/nsp12424V424VgtGgtT88B.1.1.5190.000318
ORF1ab/nsp12424V424VgtGgtT77AY.1200.00026
ORF1ab/nsp12424V424VgtGgtT77AY.1210.000947
ORF1ab/nsp12424V424VgtGgtT67AY.30.00006
ORF1ab/nsp12424V424VgtGgtT77AY.620.00305
ORF1ab/nsp12424V424VgtGgtT67B.1.5260.000141
ORF1ab/nsp12424V424VgtGgtT77C.230.040698
ORF1ab/nsp12424V424VgtGgtT66AY.200.000233
ORF1ab/nsp12424V424VgtGgtT66AY.740.000694
ORF1ab/nsp12424V424VgtGgtT66B.1.1.3570.75
ORF1ab/nsp12424V424VgtGgtT66B.1.6210.000531
ORF1ab/nsp12424V424VgtGgtT45AY.580.00363
ORF1ab/nsp12424V424VgtGgtT55AY.850.002136
ORF1ab/nsp12424V424VgtGgtT55B.1.617.10.000645
ORF1ab/nsp12424V424VgtGgtT55B.1.6200.00473
ORF1ab/nsp12424V424VgtGgtT44AY.1170.000338
ORF1ab/nsp12424V424VgtGgtT34AY.460.000312
ORF1ab/nsp12424V424VgtGgtT44AY.680.001095
ORF1ab/nsp12424V424VgtGgtT44B.1.1.2530.010025
ORF1ab/nsp12424V424VgtGgtT44B.1.177.190.005722
ORF1ab/nsp12424V424VgtGgtT44B.1.177.60.003906
ORF1ab/nsp12424V424VgtGgtT44B.1.5170.001708
ORF1ab/nsp12424V424VgtGgtT44Q.40.001819
ORF1ab/nsp12424V424VgtGgtT33AY.1190.000106
ORF1ab/nsp12424V424VgtGgtT33AY.360.000445
ORF1ab/nsp12424V424VgtGgtT33AY.39.10.000119
ORF1ab/nsp12424V424VgtGgtT33AY.450.000365
ORF1ab/nsp12424V424VgtGgtT33AY.9.20.00011
ORF1ab/nsp12424V424VgtGgtT33AY.980.000237
ORF1ab/nsp12424V424VgtGgtT33B.1.1.1890.004539
ORF1ab/nsp12424V424VgtGgtT33B.1.1.330.001263
ORF1ab/nsp12424V424VgtGgtT33B.1.1.4090.008499
ORF1ab/nsp12424V424VgtGgtT33B.1.1.4220.136364
ORF1ab/nsp12424V424VgtGgtT23B.1.1.500.001358
ORF1ab/nsp12424V424VgtGgtT33B.1.1260.003827
ORF1ab/nsp12424V424VgtGgtT33B.1.2190.028302
ORF1ab/nsp12424V424VgtGgtT33B.1.3370.01676
ORF1ab/nsp12424V424VgtGgtT33B.1.351.30.002629
ORF1ab/nsp12424V424VgtGgtT33B.1.4040.003906
ORF1ab/nsp12424V424VgtGgtT33B.1.5640.001278
ORF1ab/nsp12424V424VgtGgtT33D.20.000225
ORF1ab/nsp12424V424VgtGgtT13P.1.120.000484
ORF1ab/nsp12424V424VgtGgtT22A.250.036364
ORF1ab/nsp12424V424VgtGgtT12AY.1000.000046
ORF1ab/nsp12424V424VgtGgtT22AY.270.000129
ORF1ab/nsp12424V424VgtGgtT22AY.330.000134
ORF1ab/nsp12424V424VgtGgtT22AY.350.000466
ORF1ab/nsp12424V424VgtGgtT22AY.4.2.10.000298
ORF1ab/nsp12424V424VgtGgtT22AY.4.50.000215
ORF1ab/nsp12424V424VgtGgtT22AY.420.00008
ORF1ab/nsp12424V424VgtGgtT22AY.46.20.001271
ORF1ab/nsp12424V424VgtGgtT22AY.470.000062
ORF1ab/nsp12424V424VgtGgtT22AY.550.001835
ORF1ab/nsp12424V424VgtGgtT12AY.750.000056
ORF1ab/nsp12424V424VgtGgtT22AY.920.000575
ORF1ab/nsp12424V424VgtGgtT22B.1.1.10.000653
ORF1ab/nsp12424V424VgtGgtT22B.1.1.250.001137
ORF1ab/nsp12424V424VgtGgtT22B.1.1.3480.001592
ORF1ab/nsp12424V424VgtGgtT22B.1.1.40.005952
ORF1ab/nsp12424V424VgtGgtT22B.1.177.210.000153
ORF1ab/nsp12424V424VgtGgtT22B.1.2210.000142
ORF1ab/nsp12424V424VgtGgtT12B.1.2430.00007
ORF1ab/nsp12424V424VgtGgtT22B.1.3350.020619
ORF1ab/nsp12424V424VgtGgtT22B.1.466.20.000782
ORF1ab/nsp12424V424VgtGgtT22B.1.5160.003914
ORF1ab/nsp12424V424VgtGgtT22C.36.30.001134
ORF1ab/nsp12424V424VgtGgtT22P.20.000373
ORF1ab/nsp12424V424VgtGgtT11AY.10.000396
ORF1ab/nsp12424V424VgtGgtT11AY.1060.000335
ORF1ab/nsp12424V424VgtGgtT11AY.1110.000183
ORF1ab/nsp12424V424VgtGgtT11AY.1130.000142
ORF1ab/nsp12424V424VgtGgtT11AY.120.10.000321
ORF1ab/nsp12424V424VgtGgtT11AY.120.20.001285
ORF1ab/nsp12424V424VgtGgtT11AY.16.10.00047
ORF1ab/nsp12424V424VgtGgtT11AY.3.10.000085
ORF1ab/nsp12424V424VgtGgtT11AY.380.000499
ORF1ab/nsp12424V424VgtGgtT11AY.46.10.001027
ORF1ab/nsp12424V424VgtGgtT11AY.46.50.000198
ORF1ab/nsp12424V424VgtGgtT11AY.46.60.000072
ORF1ab/nsp12424V424VgtGgtT11AY.5.40.000277
ORF1ab/nsp12424V424VgtGgtT11AY.560.001605
ORF1ab/nsp12424V424VgtGgtT11AY.640.000595
ORF1ab/nsp12424V424VgtGgtT11AY.650.000533
ORF1ab/nsp12424V424VgtGgtT11AY.660.00107
ORF1ab/nsp12424V424VgtGgtT11AY.7.10.000113
ORF1ab/nsp12424V424VgtGgtT11AY.700.000209
ORF1ab/nsp12424V424VgtGgtT11AY.75.10.00018
ORF1ab/nsp12424V424VgtGgtT11AY.9.10.000084
ORF1ab/nsp12424V424VgtGgtT11AY.900.000684
ORF1ab/nsp12424V424VgtGgtT11AY.99.20.000092
ORF1ab/nsp12424V424VgtGgtT11B0.000128
ORF1ab/nsp12424V424VgtGgtT11B.1.1.1180.010204
ORF1ab/nsp12424V424VgtGgtT11B.1.1.1700.001247
ORF1ab/nsp12424V424VgtGgtT11B.1.1.2140.000055
ORF1ab/nsp12424V424VgtGgtT11B.1.1.2190.005
ORF1ab/nsp12424V424VgtGgtT11B.1.1.2310.003096
ORF1ab/nsp12424V424VgtGgtT11B.1.1.280.000311
ORF1ab/nsp12424V424VgtGgtT11B.1.1.2820.011628
ORF1ab/nsp12424V424VgtGgtT11B.1.1.3170.000412
ORF1ab/nsp12424V424VgtGgtT11B.1.1.3740.002375
ORF1ab/nsp12424V424VgtGgtT11B.1.1.3980.003226
ORF1ab/nsp12424V424VgtGgtT11B.1.1.410.006329
ORF1ab/nsp12424V424VgtGgtT11B.1.1.4860.001577
ORF1ab/nsp12424V424VgtGgtT11B.1.1.630.000386
ORF1ab/nsp12424V424VgtGgtT11B.1.1390.000733
ORF1ab/nsp12424V424VgtGgtT11B.1.177.200.001517
ORF1ab/nsp12424V424VgtGgtT11B.1.177.230.003236
ORF1ab/nsp12424V424VgtGgtT11B.1.2320.000537
ORF1ab/nsp12424V424VgtGgtT11B.1.2400.000216
ORF1ab/nsp12424V424VgtGgtT11B.1.2410.000812
ORF1ab/nsp12424V424VgtGgtT11B.1.2580.000067
ORF1ab/nsp12424V424VgtGgtT11B.1.258.110.000396
ORF1ab/nsp12424V424VgtGgtT11B.1.2600.003344
ORF1ab/nsp12424V424VgtGgtT11B.1.351.20.000303
ORF1ab/nsp12424V424VgtGgtT11B.1.36.270.000763
ORF1ab/nsp12424V424VgtGgtT11B.1.36.360.000602
ORF1ab/nsp12424V424VgtGgtT11B.1.4160.001269
ORF1ab/nsp12424V424VgtGgtT11B.1.4620.007246
ORF1ab/nsp12424V424VgtGgtT11B.1.4970.000315
ORF1ab/nsp12424V424VgtGgtT11B.1.5580.004566
ORF1ab/nsp12424V424VgtGgtT11B.1.619.10.000641
ORF1ab/nsp12424V424VgtGgtT11B.1.621.10.000506
ORF1ab/nsp12424V424VgtGgtT11B.1.6360.006711
ORF1ab/nsp12424V424VgtGgtT11B.550.00295
ORF1ab/nsp12424V424VgtGgtT11C.10.002392
ORF1ab/nsp12424V424VgtGgtT11P.1.70.000319
ORF1ab/nsp12424V424VgtGgtT11Q.10.000126
ORF1ab/nsp12424V424VgtGgtT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.