CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 423 & Codon = gTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12423A423VA4815VnonsyngCtgTt1495814958114707-14709

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12423A423VgCtgTt1495814958All0.002861
ORF1ab/nsp12423A423VgCtgTt93109310B.1.1.2840.999893
ORF1ab/nsp12423A423VgCtgTt12561256AY.40.001955
ORF1ab/nsp12423A423VgCtgTt856856AY.290.013502
ORF1ab/nsp12423A423VgCtgTt494494B.1.617.20.00186
ORF1ab/nsp12423A423VgCtgTt325325AY.770.366404
ORF1ab/nsp12423A423VgCtgTt241241AY.1200.00896
ORF1ab/nsp12423A423VgCtgTt235235AY.330.015693
ORF1ab/nsp12423A423VgCtgTt213213AY.1180.013344
ORF1ab/nsp12423A423VgCtgTt171171B.1.1.70.000153
ORF1ab/nsp12423A423VgCtgTt144144B.1.10.002612
ORF1ab/nsp12423A423VgCtgTt138138AY.440.00084
ORF1ab/nsp12423A423VgCtgTt121121AY.30.001204
ORF1ab/nsp12423A423VgCtgTt8989AY.170.729508
ORF1ab/nsp12423A423VgCtgTt8686AY.1030.000534
ORF1ab/nsp12423A423VgCtgTt8080B.10.000733
ORF1ab/nsp12423A423VgCtgTt7777AY.1170.006508
ORF1ab/nsp12423A423VgCtgTt7777AY.46.60.00556
ORF1ab/nsp12423A423VgCtgTt6666AY.3.10.005627
ORF1ab/nsp12423A423VgCtgTt6464AY.250.000385
ORF1ab/nsp12423A423VgCtgTt6161AY.430.00027
ORF1ab/nsp12423A423VgCtgTt4242B.1.20.00037
ORF1ab/nsp12423A423VgCtgTt3838AY.390.000939
ORF1ab/nsp12423A423VgCtgTt3434B.1.5950.008873
ORF1ab/nsp12423A423VgCtgTt3232AY.1020.000848
ORF1ab/nsp12423A423VgCtgTt3030B.1.1.1600.714286
ORF1ab/nsp12423A423VgCtgTt2929B.1.1770.000382
ORF1ab/nsp12423A423VgCtgTt2525AY.980.001975
ORF1ab/nsp12423A423VgCtgTt2424AY.4.20.000521
ORF1ab/nsp12423A423VgCtgTt2222AY.260.000623
ORF1ab/nsp12423A423VgCtgTt2222AY.98.10.001065
ORF1ab/nsp12423A423VgCtgTt2121AY.1210.002842
ORF1ab/nsp12423A423VgCtgTt1919AY.690.003547
ORF1ab/nsp12423A423VgCtgTt1717AY.29.10.003749
ORF1ab/nsp12423A423VgCtgTt1616AY.16.10.007519
ORF1ab/nsp12423A423VgCtgTt1414AY.1000.000644
ORF1ab/nsp12423A423VgCtgTt1313AY.200.000505
ORF1ab/nsp12423A423VgCtgTt1313AY.470.000404
ORF1ab/nsp12423A423VgCtgTt1313AY.99.20.001198
ORF1ab/nsp12423A423VgCtgTt1313B.1.5960.001133
ORF1ab/nsp12423A423VgCtgTt1212AY.420.000483
ORF1ab/nsp12423A423VgCtgTt1212AY.60.000494
ORF1ab/nsp12423A423VgCtgTt1212B.1.4290.000282
ORF1ab/nsp12423A423VgCtgTt1111AY.460.001145
ORF1ab/nsp12423A423VgCtgTt1111AY.50.000227
ORF1ab/nsp12423A423VgCtgTt1111B.1.1.5190.000437
ORF1ab/nsp12423A423VgCtgTt99AY.10.003562
ORF1ab/nsp12423A423VgCtgTt99B.1.6200.008515
ORF1ab/nsp12423A423VgCtgTt88B.1.1.1350.037559
ORF1ab/nsp12423A423VgCtgTt77AY.1130.000997
ORF1ab/nsp12423A423VgCtgTt77AY.550.006422
ORF1ab/nsp12423A423VgCtgTt77AY.750.000392
ORF1ab/nsp12423A423VgCtgTt77B.1.1.3690.003124
ORF1ab/nsp12423A423VgCtgTt77B.1.2580.000466
ORF1ab/nsp12423A423VgCtgTt66AY.140.000528
ORF1ab/nsp12423A423VgCtgTt66AY.680.001642
ORF1ab/nsp12423A423VgCtgTt66B.1.1.2170.021818
ORF1ab/nsp12423A423VgCtgTt66B.1.1.3480.004777
ORF1ab/nsp12423A423VgCtgTt55AY.120.00158
ORF1ab/nsp12423A423VgCtgTt55AY.130.000805
ORF1ab/nsp12423A423VgCtgTt55B.1.1600.000156
ORF1ab/nsp12423A423VgCtgTt55B.1.466.20.001956
ORF1ab/nsp12423A423VgCtgTt44AY.1160.001147
ORF1ab/nsp12423A423VgCtgTt44AY.190.004561
ORF1ab/nsp12423A423VgCtgTt44AY.34.10.00204
ORF1ab/nsp12423A423VgCtgTt44AY.360.000593
ORF1ab/nsp12423A423VgCtgTt44AY.450.000487
ORF1ab/nsp12423A423VgCtgTt44AY.46.20.002541
ORF1ab/nsp12423A423VgCtgTt44AY.510.003636
ORF1ab/nsp12423A423VgCtgTt44B.1.1.700.001364
ORF1ab/nsp12423A423VgCtgTt44B.1.2430.000278
ORF1ab/nsp12423A423VgCtgTt44B.1.360.000584
ORF1ab/nsp12423A423VgCtgTt44B.1.5820.001963
ORF1ab/nsp12423A423VgCtgTt44B.1.6370.000292
ORF1ab/nsp12423A423VgCtgTt33A.2.50.001497
ORF1ab/nsp12423A423VgCtgTt33A.210.00831
ORF1ab/nsp12423A423VgCtgTt33AY.340.000291
ORF1ab/nsp12423A423VgCtgTt33AY.39.10.000119
ORF1ab/nsp12423A423VgCtgTt33AY.920.000862
ORF1ab/nsp12423A423VgCtgTt33B0.000383
ORF1ab/nsp12423A423VgCtgTt33B.1.1.2530.007519
ORF1ab/nsp12423A423VgCtgTt33B.1.177.860.00055
ORF1ab/nsp12423A423VgCtgTt33B.1.36.290.001552
ORF1ab/nsp12423A423VgCtgTt33B.1.36.80.003
ORF1ab/nsp12423A423VgCtgTt33B.1.5260.000071
ORF1ab/nsp12423A423VgCtgTt33B.6.80.024793
ORF1ab/nsp12423A423VgCtgTt33D.20.000225
ORF1ab/nsp12423A423VgCtgTt33P.1.150.000697
ORF1ab/nsp12423A423VgCtgTt22A.23.10.001408
ORF1ab/nsp12423A423VgCtgTt22AY.100.00106
ORF1ab/nsp12423A423VgCtgTt22AY.1010.000981
ORF1ab/nsp12423A423VgCtgTt22AY.1060.00067
ORF1ab/nsp12423A423VgCtgTt22AY.120.2.10.000997
ORF1ab/nsp12423A423VgCtgTt22AY.230.000139
ORF1ab/nsp12423A423VgCtgTt22AY.270.000129
ORF1ab/nsp12423A423VgCtgTt22AY.300.000791
ORF1ab/nsp12423A423VgCtgTt22AY.320.001065
ORF1ab/nsp12423A423VgCtgTt22AY.610.00021
ORF1ab/nsp12423A423VgCtgTt22AY.730.001331
ORF1ab/nsp12423A423VgCtgTt22AY.740.000231
ORF1ab/nsp12423A423VgCtgTt22AY.90.000135
ORF1ab/nsp12423A423VgCtgTt22AY.99.10.003106
ORF1ab/nsp12423A423VgCtgTt22B.1.1.1760.000879
ORF1ab/nsp12423A423VgCtgTt22B.1.1.2140.000111
ORF1ab/nsp12423A423VgCtgTt22B.1.1.2400.00939
ORF1ab/nsp12423A423VgCtgTt22B.1.1.3060.000877
ORF1ab/nsp12423A423VgCtgTt22B.1.1.3160.00185
ORF1ab/nsp12423A423VgCtgTt22B.1.1.370.000386
ORF1ab/nsp12423A423VgCtgTt22B.1.1.560.035714
ORF1ab/nsp12423A423VgCtgTt22B.1.177.120.000303
ORF1ab/nsp12423A423VgCtgTt22B.1.177.320.002699
ORF1ab/nsp12423A423VgCtgTt22B.1.177.810.000379
ORF1ab/nsp12423A423VgCtgTt22B.1.3630.025974
ORF1ab/nsp12423A423VgCtgTt22B.1.3690.00057
ORF1ab/nsp12423A423VgCtgTt22B.1.4270.000101
ORF1ab/nsp12423A423VgCtgTt22B.1.5170.000854
ORF1ab/nsp12423A423VgCtgTt22B.1.617.30.00597
ORF1ab/nsp12423A423VgCtgTt22B.60.00182
ORF1ab/nsp12423A423VgCtgTt22P.10.000032
ORF1ab/nsp12423A423VgCtgTt22P.1.140.000096
ORF1ab/nsp12423A423VgCtgTt11A0.000387
ORF1ab/nsp12423A423VgCtgTt11A.10.000282
ORF1ab/nsp12423A423VgCtgTt11A.2.20.001689
ORF1ab/nsp12423A423VgCtgTt11A.2.5.10.004808
ORF1ab/nsp12423A423VgCtgTt11A.270.001656
ORF1ab/nsp12423A423VgCtgTt11AU.30.00211
ORF1ab/nsp12423A423VgCtgTt11AY.1050.000643
ORF1ab/nsp12423A423VgCtgTt11AY.1070.000466
ORF1ab/nsp12423A423VgCtgTt11AY.1100.000113
ORF1ab/nsp12423A423VgCtgTt11AY.1150.005208
ORF1ab/nsp12423A423VgCtgTt11AY.1190.000035
ORF1ab/nsp12423A423VgCtgTt11AY.120.10.000321
ORF1ab/nsp12423A423VgCtgTt11AY.20.000356
ORF1ab/nsp12423A423VgCtgTt11AY.280.00189
ORF1ab/nsp12423A423VgCtgTt11AY.380.000499
ORF1ab/nsp12423A423VgCtgTt11AY.39.1.10.000725
ORF1ab/nsp12423A423VgCtgTt11AY.4.2.10.000149
ORF1ab/nsp12423A423VgCtgTt11AY.4.40.000409
ORF1ab/nsp12423A423VgCtgTt11AY.4.50.000107
ORF1ab/nsp12423A423VgCtgTt11AY.400.000964
ORF1ab/nsp12423A423VgCtgTt11AY.46.30.000934
ORF1ab/nsp12423A423VgCtgTt11AY.5.40.000277
ORF1ab/nsp12423A423VgCtgTt11AY.520.000814
ORF1ab/nsp12423A423VgCtgTt11AY.540.000095
ORF1ab/nsp12423A423VgCtgTt11AY.620.000436
ORF1ab/nsp12423A423VgCtgTt11AY.640.000595
ORF1ab/nsp12423A423VgCtgTt11AY.650.000533
ORF1ab/nsp12423A423VgCtgTt11AY.7.10.000113
ORF1ab/nsp12423A423VgCtgTt11AY.75.10.00018
ORF1ab/nsp12423A423VgCtgTt11AY.850.000427
ORF1ab/nsp12423A423VgCtgTt11AY.860.00083
ORF1ab/nsp12423A423VgCtgTt11AY.9.20.000037
ORF1ab/nsp12423A423VgCtgTt11AY.930.000273
ORF1ab/nsp12423A423VgCtgTt11AY.940.000443
ORF1ab/nsp12423A423VgCtgTt11B.1.1.10.000327
ORF1ab/nsp12423A423VgCtgTt11B.1.1.1580.012195
ORF1ab/nsp12423A423VgCtgTt11B.1.1.1700.001247
ORF1ab/nsp12423A423VgCtgTt11B.1.1.1940.00495
ORF1ab/nsp12423A423VgCtgTt11B.1.1.2220.000204
ORF1ab/nsp12423A423VgCtgTt11B.1.1.2360.006897
ORF1ab/nsp12423A423VgCtgTt11B.1.1.2430.004082
ORF1ab/nsp12423A423VgCtgTt11B.1.1.2770.000759
ORF1ab/nsp12423A423VgCtgTt11B.1.1.2910.000742
ORF1ab/nsp12423A423VgCtgTt11B.1.1.3170.000412
ORF1ab/nsp12423A423VgCtgTt11B.1.1.3720.000689
ORF1ab/nsp12423A423VgCtgTt11B.1.1.4160.000905
ORF1ab/nsp12423A423VgCtgTt11B.1.1.4170.002703
ORF1ab/nsp12423A423VgCtgTt11B.1.1.4260.035714
ORF1ab/nsp12423A423VgCtgTt11B.1.1.4480.002033
ORF1ab/nsp12423A423VgCtgTt11B.1.1.630.000386
ORF1ab/nsp12423A423VgCtgTt11B.1.1390.000733
ORF1ab/nsp12423A423VgCtgTt11B.1.160.140.002119
ORF1ab/nsp12423A423VgCtgTt11B.1.160.160.000929
ORF1ab/nsp12423A423VgCtgTt11B.1.177.150.000631
ORF1ab/nsp12423A423VgCtgTt11B.1.177.180.00116
ORF1ab/nsp12423A423VgCtgTt11B.1.177.230.003236
ORF1ab/nsp12423A423VgCtgTt11B.1.177.350.000691
ORF1ab/nsp12423A423VgCtgTt11B.1.177.750.001041
ORF1ab/nsp12423A423VgCtgTt11B.1.2060.000816
ORF1ab/nsp12423A423VgCtgTt11B.1.2140.003663
ORF1ab/nsp12423A423VgCtgTt11B.1.2210.000071
ORF1ab/nsp12423A423VgCtgTt11B.1.2340.000132
ORF1ab/nsp12423A423VgCtgTt11B.1.2410.000812
ORF1ab/nsp12423A423VgCtgTt11B.1.2650.001271
ORF1ab/nsp12423A423VgCtgTt11B.1.351.30.000876
ORF1ab/nsp12423A423VgCtgTt11B.1.36.100.004785
ORF1ab/nsp12423A423VgCtgTt11B.1.362.20.004717
ORF1ab/nsp12423A423VgCtgTt11B.1.4000.000429
ORF1ab/nsp12423A423VgCtgTt11B.1.4090.000781
ORF1ab/nsp12423A423VgCtgTt11B.1.438.10.000107
ORF1ab/nsp12423A423VgCtgTt11B.1.4680.005714
ORF1ab/nsp12423A423VgCtgTt11B.1.5030.002488
ORF1ab/nsp12423A423VgCtgTt11B.1.5410.004425
ORF1ab/nsp12423A423VgCtgTt11B.1.5490.007194
ORF1ab/nsp12423A423VgCtgTt11B.1.5510.00129
ORF1ab/nsp12423A423VgCtgTt11B.1.5610.000397
ORF1ab/nsp12423A423VgCtgTt11B.1.5800.004065
ORF1ab/nsp12423A423VgCtgTt11B.1.5880.00091
ORF1ab/nsp12423A423VgCtgTt11B.1.617.10.000129
ORF1ab/nsp12423A423VgCtgTt11B.1.6210.000089
ORF1ab/nsp12423A423VgCtgTt11B.1.6270.00202
ORF1ab/nsp12423A423VgCtgTt11C.370.000116
ORF1ab/nsp12423A423VgCtgTt11N.40.004255
ORF1ab/nsp12423A423VgCtgTt11N.50.001767
ORF1ab/nsp12423A423VgCtgTt11P.1.10.000318
ORF1ab/nsp12423A423VgCtgTt11P.1.130.000898
ORF1ab/nsp12423A423VgCtgTt11Q.10.000126
ORF1ab/nsp12423A423VgCtgTt11Q.80.000165
ORF1ab/nsp12423A423VgCtgTt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.