CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 416 | N416N | N4808N | syn | aaC | aaT | 2327 | 2327 | 1 | 14686-14688 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 2327 | 2327 | All | 0.000445 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 670 | 670 | B.1.1.7 | 0.0006 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 395 | 395 | AY.4 | 0.000615 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 97 | 97 | B.1.1.528 | 0.466346 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 87 | 87 | B.1.1 | 0.001578 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 83 | 83 | B.1.177 | 0.001093 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 59 | 59 | B.1.617.2 | 0.000222 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 53 | 53 | AY.103 | 0.000329 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 52 | 52 | B.1 | 0.000476 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 43 | 43 | B.1.2 | 0.000379 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 42 | 42 | AY.20 | 0.001632 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 41 | 41 | AY.54 | 0.003909 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 38 | 38 | AY.98.1 | 0.00184 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 36 | 36 | AY.44 | 0.000219 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 34 | 34 | B.1.429 | 0.0008 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 33 | 33 | AY.99.2 | 0.003041 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 30 | 30 | AY.4.1 | 0.022124 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 29 | 29 | C.35 | 0.022446 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 27 | 27 | AY.43 | 0.00012 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 25 | 25 | AY.25 | 0.00015 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 21 | 21 | B.1.1.304 | 0.058989 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 17 | 17 | B.1.1.214 | 0.000943 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 16 | 16 | AY.47 | 0.000498 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 15 | 15 | AY.22 | 0.031381 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 15 | 15 | B.1.177.4 | 0.003166 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 14 | 14 | AY.120 | 0.000521 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 14 | 14 | AY.3 | 0.000139 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 13 | 13 | B.1.1.519 | 0.000516 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 13 | 13 | B.1.362 | 0.020031 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 11 | 11 | B.1.1.369 | 0.004909 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 10 | 10 | AY.102 | 0.000265 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 9 | 9 | C.37 | 0.001045 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 8 | 8 | B.1.1.90 | 0.8 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 8 | 8 | B.1.160 | 0.00025 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 8 | 8 | B.1.221 | 0.000568 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 8 | 8 | P.1 | 0.000126 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 7 | 7 | B.1.1.434 | 0.00244 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 5 | 5 | AY.120.1 | 0.001605 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 5 | 5 | AY.35 | 0.001165 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 5 | 5 | AY.46.4 | 0.000823 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 5 | 5 | AY.98 | 0.000395 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 4 | 4 | AY.70 | 0.000834 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 4 | 4 | B.1.1.265 | 0.012618 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 3 | 3 | AY.2 | 0.001068 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 3 | 3 | B.1.147 | 0.002268 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 3 | 3 | B.1.218 | 0.015464 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 3 | 3 | B.1.561 | 0.001191 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 3 | 3 | C.16 | 0.003181 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 2 | 2 | AY.57 | 0.001312 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 2 | 2 | B.1.1.274 | 0.010101 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 2 | 2 | B.1.1.303 | 0.005525 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 2 | 2 | B.1.128 | 0.001271 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 2 | 2 | B.1.177.58 | 0.002663 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 2 | 2 | B.1.36.36 | 0.001204 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | A.4 | 0.012821 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.1.26 | 0.005236 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.167 | 0.007812 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.36.33 | 0.007576 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.536 | 0.02381 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | B.10 | 0.008264 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp12 | 416 | N416N | aaC | aaT | 1 | 1 | W.2 | 0.004831 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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