CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 412 | P412P | P4804P | syn | ccC | ccT | 1149085 | 1148643 | 0.999615 | 14674-14676 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1148643 | 1149085 | All | 0.219692 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1114036 | 1114059 | B.1.1.7 | 0.997311 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 7911 | 7911 | Q.1 | 0.999368 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 6877 | 6877 | Q.3 | 0.997389 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 4626 | 4626 | Q.8 | 0.762863 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2990 | 2990 | B.1.1 | 0.054241 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2197 | 2197 | Q.4 | 0.99909 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1625 | 1625 | Q.2 | 0.996933 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1464 | 1469 | B.1 | 0.01341 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 897 | 897 | Q.7 | 0.996667 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 332 | 519 | AY.4 | 0.000517 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 330 | 370 | B.1.2 | 0.002906 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 283 | 314 | B.1.617.2 | 0.001066 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 256 | 260 | AY.5 | 0.005286 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 260 | 260 | AY.98.1 | 0.012592 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 238 | 238 | B.1.177.81 | 0.045059 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 214 | 214 | B.1.177.73 | 0.121178 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 172 | 172 | B.1.1.226 | 1 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 170 | 170 | B.1.177 | 0.002238 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 168 | 168 | AY.85 | 0.071764 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 51 | 152 | AY.3 | 0.000507 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 151 | 151 | Q.6 | 1 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 146 | 150 | AY.43 | 0.000647 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 143 | 143 | B.1.400 | 0.061347 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 138 | 138 | B.1.36.36 | 0.083082 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 117 | 119 | AY.103 | 0.000726 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 110 | 110 | P.1 | 0.001733 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 100 | 100 | AY.44 | 0.000609 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 100 | 100 | B.1.1.294 | 0.126582 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 72 | 72 | B.1.429 | 0.001694 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 69 | 69 | B.1.375 | 0.056557 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 67 | 67 | AY.25 | 0.000403 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 64 | 64 | AY.26 | 0.001812 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 64 | 64 | B.1.160 | 0.001996 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 62 | 62 | B.1.526 | 0.001457 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 59 | 59 | B.1.576 | 0.05349 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 59 | 59 | Q.5 | 1 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 52 | 56 | AY.29 | 0.00082 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 56 | 56 | P.1.14 | 0.002677 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 55 | 55 | B.1.221 | 0.003907 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 55 | 55 | B.1.621 | 0.004869 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 48 | 48 | B.1.351 | 0.001427 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 43 | 43 | AY.75 | 0.002409 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 43 | 43 | B | 0.005496 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 43 | 43 | B.1.177.7 | 0.007089 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 41 | 41 | B.1.1.37 | 0.007907 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 40 | 40 | AY.121 | 0.005413 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 37 | 38 | B.1.1.409 | 0.104816 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 36 | 36 | B.1.1.519 | 0.00143 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 35 | 35 | B.1.567 | 0.116667 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 32 | 33 | AY.117 | 0.002705 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 31 | 32 | AY.20 | 0.001205 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 31 | 32 | AY.39 | 0.000766 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 31 | 32 | B.1.596 | 0.002701 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 31 | 32 | C.37 | 0.003598 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 29 | 30 | AY.42 | 0.001167 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 29 | 29 | B.1.258 | 0.00193 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 29 | 29 | R.1 | 0.00261 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 27 | 27 | AY.16 | 0.010251 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 26 | 27 | AY.47 | 0.000809 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 26 | 27 | B.1.311 | 0.007139 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 25 | 26 | B.1.525 | 0.002829 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 23 | 24 | P.1.1 | 0.007306 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 22 | 22 | B.1.1.256 | 0.30137 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 22 | 22 | B.1.1.28 | 0.006847 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 22 | 22 | B.1.595 | 0.005741 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 21 | 21 | AY.11 | 0.028112 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 18 | 19 | AY.33 | 0.001202 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 19 | 19 | AY.9 | 0.001284 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 19 | 19 | B.1.1.507 | 0.165217 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 18 | 19 | B.1.617.1 | 0.002321 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 18 | 18 | AY.45 | 0.00219 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 16 | 17 | AY.102 | 0.000424 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 17 | 17 | AY.23 | 0.001186 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 17 | 17 | AY.61 | 0.001781 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 15 | 15 | B.1.1.284 | 0.001611 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 15 | 15 | B.1.139 | 0.010997 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 15 | 15 | B.1.427 | 0.000757 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 15 | 15 | P.1.16 | 0.005612 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 14 | 14 | AY.30 | 0.00554 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 14 | 14 | B.1.1.161 | 0.04947 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 14 | 14 | B.1.1.220 | 0.026022 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 14 | 14 | B.1.637 | 0.001023 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 13 | 13 | B.1.243 | 0.000905 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 13 | 13 | B.1.623 | 0.006974 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 11 | 11 | 0.611111 | |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 10 | 11 | AY.46 | 0.001041 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 11 | 11 | AY.9.2 | 0.000404 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 11 | 11 | B.1.1.528 | 0.052885 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 11 | 11 | C.36.3 | 0.006239 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 11 | 11 | P.1.15 | 0.002556 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 10 | 10 | AY.98 | 0.00079 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 10 | 10 | B.1.1.312 | 0.01912 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 10 | 10 | B.1.1.70 | 0.003411 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 10 | 10 | B.1.36 | 0.001459 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 10 | 10 | B.1.466.2 | 0.003912 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 9 | 9 | AY.3.1 | 0.000767 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 9 | 9 | AY.75.1 | 0.001623 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 9 | 9 | B.1.1.1 | 0.00294 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 9 | 9 | B.1.351.2 | 0.002723 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 8 | B.1.369 | 0.000856 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 8 | 8 | B.1.627 | 0.016162 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 8 | 8 | P.1.17 | 0.001294 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 6 | 7 | AY.100 | 0.000276 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 7 | 7 | AY.14 | 0.000616 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 6 | 7 | AY.52 | 0.004886 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 7 | 7 | B.1.1.318 | 0.002112 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 7 | 7 | B.1.1.417 | 0.018919 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 7 | 7 | B.1.146 | 0.029661 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 6 | 6 | A | 0.002322 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 6 | 6 | AY.39.1 | 0.000238 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 6 | AY.54 | 0.000191 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 6 | 6 | AY.9.1 | 0.000502 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 6 | 6 | B.1.1.277 | 0.004552 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 6 | 6 | B.1.206 | 0.004894 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 6 | 6 | B.1.258.17 | 0.000624 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 6 | 6 | B.1.533 | 0.057692 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 5 | 5 | AY.4.4 | 0.002046 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 5 | 5 | AY.5.4 | 0.001384 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 5 | 5 | B.1.1.10 | 0.005574 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 5 | 5 | B.1.1.189 | 0.007564 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 5 | 5 | B.1.1.39 | 0.002548 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 5 | 5 | B.1.177.79 | 0.01171 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 5 | 5 | B.1.238 | 0.074627 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 5 | 5 | B.1.398 | 0.014881 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 5 | 5 | B.1.411 | 0.018519 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 5 | 5 | B.1.575 | 0.001517 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 5 | 5 | B.1.582 | 0.002453 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 5 | 5 | B.1.599 | 0.018248 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 5 | 5 | B.1.609 | 0.002397 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 5 | 5 | P.1.7 | 0.001596 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 4 | 4 | A.2.5 | 0.001996 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 4 | 4 | AY.68 | 0.001095 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 4 | AY.71 | 0.001425 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 4 | 4 | AY.92 | 0.001149 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 4 | 4 | B.1.1.208 | 0.04878 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 4 | 4 | B.1.1.216 | 0.003562 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 4 | 4 | B.1.157 | 0.01194 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 4 | 4 | B.1.36.31 | 0.007005 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 4 | 4 | B.1.367 | 0.00317 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 4 | 4 | B.1.524 | 0.005626 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 4 | 4 | B.1.580 | 0.01626 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 4 | 4 | B.1.621.1 | 0.002023 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 4 | 4 | B.1.633 | 0.166667 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | AY.37 | 0.000948 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | AY.55 | 0.002752 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | AY.62 | 0.001307 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | B.1.1.148 | 0.026316 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | B.1.1.205 | 0.011152 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | B.1.1.303 | 0.008287 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | B.1.1.311 | 0.001074 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | B.1.1.372 | 0.002066 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | B.1.1.523 | 0.004687 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | B.1.1.525 | 0.016393 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | B.1.177.31 | 0.034483 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | B.1.214 | 0.010989 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | B.1.349 | 0.002144 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | B.1.351.5 | 0.001799 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | B.1.416.1 | 0.004687 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | B.1.429.1 | 0.036145 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | B.1.462 | 0.021739 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | B.1.577 | 0.002062 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | B.1.628 | 0.001057 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | AY.109 | 0.001479 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 2 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | AY.18 | 0.020202 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 2 | AY.4.5 | 0.000107 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 2 | AY.5.3 | 0.000337 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 2 | AY.69 | 0.000187 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | AY.94 | 0.000885 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | AZ.1 | 0.001735 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | B.1.1.157 | 0.001826 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | B.1.1.370 | 0.025316 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | B.1.1.524 | 0.041667 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | B.1.160.16 | 0.001859 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | B.1.177.5 | 0.002484 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | B.1.237 | 0.00995 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | B.1.260 | 0.006689 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | B.1.380 | 0.013245 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 2 | B.1.561 | 0.000397 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | B.1.565 | 0.001621 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | B.1.568 | 0.002222 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | B.1.625 | 0.004706 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | B.1.636 | 0.013423 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | C.23 | 0.011628 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | P.1.13 | 0.001797 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | A.7 | 0.055556 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.1.229 | 0.005747 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.1.254 | 0.011236 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.1.391 | 0.008547 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.1.412 | 0.007634 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.1.462 | 0.008621 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.1.5 | 0.008333 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.1.82 | 0.038462 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.1.99 | 0.02381 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.219 | 0.009434 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.315 | 0.006061 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.325 | 0.006897 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.505 | 0.004386 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.566 | 0.019231 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.589 | 0.007576 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.8 | 0.001972 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.1.94 | 0.027027 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.35 | 0.007812 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | C.38 | 0.008065 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | C.8 | 0.004464 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp12 | 412 | P412P | ccC | ccT | 1 | 1 | P.1.6 | 0.001946 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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