CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 401

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12401L401FL4793FnonsynCttTtt419419114641-14643
ORF1ab/nsp12401L401LL4793LsynctTctC4024010.99751214641-14643
ORF1ab/nsp12401L401LL4793LsynctTctG40210.0024875614641-14643
ORF1ab/nsp12401L401delL4793deldelCTT---3333114641-14643
ORF1ab/nsp12401L401IL4793InonsynCttAtt1010114641-14643
ORF1ab/nsp12401L401PL4793PnonsyncTtcCt860.7514641-14643
ORF1ab/nsp12401L401PL4793PnonsyncTTcCC820.2514641-14643
ORF1ab/nsp12401L401RL4793RnonsyncTtcGt11114641-14643
ORF1ab/nsp12401L401del1L4793del1delcTTc-N11114641-14643
ORF1ab/nsp12401L401SL4793SnonsynCTtTCt11114641-14643
ORF1ab/nsp12401L401VL4793VnonsynCtTGtA11114641-14643

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12401L401FCttTtt419419All0.00008
ORF1ab/nsp12401L401LctTctC401402All0.000077
ORF1ab/nsp12401L401LctTctG1402All0
ORF1ab/nsp12401L401FCttTtt281281AY.40.000437
ORF1ab/nsp12401L401LctTctC102102B.1.4021
ORF1ab/nsp12401L401LctTctC7575AY.1060.025117
ORF1ab/nsp12401L401LctTctC4444B.1.617.20.000166
ORF1ab/nsp12401L401LctTctC4242B.10.000385
ORF1ab/nsp12401L401LctTctC3737AY.1020.000981
ORF1ab/nsp12401L401delCTT---3333All0.000006
ORF1ab/nsp12401L401FCttTtt1717AY.1050.010932
ORF1ab/nsp12401L401delCTT---1717B.1.1.70.000015
ORF1ab/nsp12401L401LctTctC1212AY.430.000053
ORF1ab/nsp12401L401FCttTtt1212B.1.617.20.000045
ORF1ab/nsp12401L401ICttAtt1010All0.000002
ORF1ab/nsp12401L401FCttTtt1010AY.1020.000265
ORF1ab/nsp12401L401LctTctC1010B.1.4290.000235
ORF1ab/nsp12401L401FCttTtt99B.1.1.1570.008219
ORF1ab/nsp12401L401FCttTtt99B.1.1.5190.000357
ORF1ab/nsp12401L401LctTctC99B.1.1.70.000008
ORF1ab/nsp12401L401PcTtcCt68All0.000001
ORF1ab/nsp12401L401PcTTcCC28All0
ORF1ab/nsp12401L401LctTctC88B.1.1.10.002614
ORF1ab/nsp12401L401FCttTtt88B.1.5950.002088
ORF1ab/nsp12401L401LctTctC77AY.1200.00026
ORF1ab/nsp12401L401LctTctC66AY.40.000009
ORF1ab/nsp12401L401FCttTtt55AY.1030.000031
ORF1ab/nsp12401L401FCttTtt55AY.30.00005
ORF1ab/nsp12401L401LctTctC55B.1.1110.005875
ORF1ab/nsp12401L401FCttTtt55B.1.1770.000066
ORF1ab/nsp12401L401LctTctC44AY.1030.000025
ORF1ab/nsp12401L401LctTctC44AY.250.000024
ORF1ab/nsp12401L401LctTctC44AY.390.000099
ORF1ab/nsp12401L401LctTctC44AY.4.50.00043
ORF1ab/nsp12401L401FCttTtt44AY.440.000024
ORF1ab/nsp12401L401LctTctC44AY.440.000024
ORF1ab/nsp12401L401FCttTtt33AY.250.000018
ORF1ab/nsp12401L401FCttTtt33AY.320.001597
ORF1ab/nsp12401L401FCttTtt33AY.390.000074
ORF1ab/nsp12401L401FCttTtt33AY.46.10.00308
ORF1ab/nsp12401L401PcTtcCt33B.1.1.70.000003
ORF1ab/nsp12401L401FCttTtt33B.1.4290.000071
ORF1ab/nsp12401L401FCttTtt33B.1.5610.001191
ORF1ab/nsp12401L401FCttTtt22A.2.50.000998
ORF1ab/nsp12401L401ICttAtt22AY.1030.000012
ORF1ab/nsp12401L401FCttTtt22AY.1040.003968
ORF1ab/nsp12401L401FCttTtt22AY.1160.000574
ORF1ab/nsp12401L401LctTctC22AY.160.000759
ORF1ab/nsp12401L401FCttTtt22AY.290.000032
ORF1ab/nsp12401L401ICttAtt22AY.30.00002
ORF1ab/nsp12401L401PcTTcCC12B.10.000009
ORF1ab/nsp12401L401PcTtcCt12B.10.000009
ORF1ab/nsp12401L401FCttTtt22B.1.10.000036
ORF1ab/nsp12401L401LctTctC22B.1.1.1780.083333
ORF1ab/nsp12401L401FCttTtt22B.1.20.000018
ORF1ab/nsp12401L401FCttTtt22B.1.6050.011905
ORF1ab/nsp12401L401FCttTtt22R.10.00018
ORF1ab/nsp12401L401FCttTtt11A.2.5.10.004808
ORF1ab/nsp12401L401RcTtcGt11All0
ORF1ab/nsp12401L401VCtTGtA11All0
ORF1ab/nsp12401L401del1cTTc-N11All0
ORF1ab/nsp12401L401SCTtTCt11All0
ORF1ab/nsp12401L401delCTT---11AY.1000.000046
ORF1ab/nsp12401L401FCttTtt11AY.1060.000335
ORF1ab/nsp12401L401delCTT---11AY.1110.000183
ORF1ab/nsp12401L401LctTctC11AY.1130.000142
ORF1ab/nsp12401L401LctTctC11AY.1210.000135
ORF1ab/nsp12401L401FCttTtt11AY.140.000088
ORF1ab/nsp12401L401LctTctC11AY.200.000039
ORF1ab/nsp12401L401FCttTtt11AY.200.000039
ORF1ab/nsp12401L401ICttAtt11AY.250.000006
ORF1ab/nsp12401L401delCTT---11AY.250.000006
ORF1ab/nsp12401L401LctTctC11AY.30.00001
ORF1ab/nsp12401L401FCttTtt11AY.330.000067
ORF1ab/nsp12401L401LctTctC11AY.34.10.00051
ORF1ab/nsp12401L401delCTT---11AY.40.000002
ORF1ab/nsp12401L401delCTT---11AY.4.50.000107
ORF1ab/nsp12401L401FCttTtt11AY.400.000964
ORF1ab/nsp12401L401FCttTtt11AY.430.000004
ORF1ab/nsp12401L401PcTTcCC11AY.440.000006
ORF1ab/nsp12401L401LctTctC11AY.450.000122
ORF1ab/nsp12401L401delCTT---11AY.46.20.000635
ORF1ab/nsp12401L401LctTctC11AY.46.40.000165
ORF1ab/nsp12401L401LctTctC11AY.470.000031
ORF1ab/nsp12401L401LctTctC11AY.480.000465
ORF1ab/nsp12401L401FCttTtt11AY.610.000105
ORF1ab/nsp12401L401delCTT---11AY.680.000274
ORF1ab/nsp12401L401LctTctC11AY.750.000056
ORF1ab/nsp12401L401LctTctC11AY.840.000437
ORF1ab/nsp12401L401FCttTtt11AY.90.000068
ORF1ab/nsp12401L401LctTctC11AY.9.10.000084
ORF1ab/nsp12401L401FCttTtt11AY.9.20.000037
ORF1ab/nsp12401L401delCTT---11AY.9.20.000037
ORF1ab/nsp12401L401LctTctC11AY.9.20.000037
ORF1ab/nsp12401L401del1cTTc-N11AY.98.10.000048
ORF1ab/nsp12401L401delCTT---11AY.99.10.001553
ORF1ab/nsp12401L401SCTtTCt11B0.000128
ORF1ab/nsp12401L401FCttTtt11B0.000128
ORF1ab/nsp12401L401FCttTtt11B.10.000009
ORF1ab/nsp12401L401LctTctC11B.1.10.000018
ORF1ab/nsp12401L401delCTT---11B.1.10.000018
ORF1ab/nsp12401L401ICttAtt11B.1.1.1740.003378
ORF1ab/nsp12401L401LctTctC11B.1.1.2140.000055
ORF1ab/nsp12401L401delCTT---11B.1.1.3060.000438
ORF1ab/nsp12401L401ICttAtt11B.1.1.4340.000349
ORF1ab/nsp12401L401delCTT---11B.1.1.460.004367
ORF1ab/nsp12401L401FCttTtt11B.1.1.580.005376
ORF1ab/nsp12401L401VCtTGtA11B.1.1.70.000001
ORF1ab/nsp12401L401FCttTtt11B.1.1.70.000001
ORF1ab/nsp12401L401delCTT---11B.1.1600.000031
ORF1ab/nsp12401L401PcTtcCt11B.1.1770.000013
ORF1ab/nsp12401L401delCTT---11B.1.177.160.000664
ORF1ab/nsp12401L401FCttTtt11B.1.177.210.000076
ORF1ab/nsp12401L401ICttAtt11B.1.177.330.001645
ORF1ab/nsp12401L401delCTT---11B.1.177.540.000606
ORF1ab/nsp12401L401LctTctC11B.1.2430.00007
ORF1ab/nsp12401L401FCttTtt11B.1.2650.001271
ORF1ab/nsp12401L401ICttAtt11B.1.36.10.00114
ORF1ab/nsp12401L401FCttTtt11B.1.36.380.001642
ORF1ab/nsp12401L401FCttTtt11B.1.3770.004566
ORF1ab/nsp12401L401RcTtcGt11B.1.4330.003195
ORF1ab/nsp12401L401ICttAtt11B.1.5170.000427
ORF1ab/nsp12401L401LctTctC11B.1.5950.000261
ORF1ab/nsp12401L401LctTctC11B.1.5960.000087
ORF1ab/nsp12401L401LctTctC11B.1.6090.000479
ORF1ab/nsp12401L401delCTT---11B.1.617.20.000004
ORF1ab/nsp12401L401PcTtcCt11B.1.617.20.000004
ORF1ab/nsp12401L401LctTctC11B.1.6210.000089
ORF1ab/nsp12401L401FCttTtt11B.280.003279
ORF1ab/nsp12401L401LctTctG11C.370.000116
ORF1ab/nsp12401L401FCttTtt11D.20.000075