CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 4 & Codon = gTa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp124A4VA4396VnonsyngCagTa22802280113451-13453

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp124A4VgCagTa22802280All0.000436
ORF1ab/nsp124A4VgCagTa920920AY.40.001432
ORF1ab/nsp124A4VgCagTa329329B.1.5700.967647
ORF1ab/nsp124A4VgCagTa304304B.1.1.70.000272
ORF1ab/nsp124A4VgCagTa117117AY.1030.000726
ORF1ab/nsp124A4VgCagTa5555B.1.617.20.000207
ORF1ab/nsp124A4VgCagTa5555B.1.6370.004019
ORF1ab/nsp124A4VgCagTa4343AY.30.000428
ORF1ab/nsp124A4VgCagTa3333B.1.20.000291
ORF1ab/nsp124A4VgCagTa2929B.1.2580.00193
ORF1ab/nsp124A4VgCagTa2424AY.250.000144
ORF1ab/nsp124A4VgCagTa2222B.1.4290.000518
ORF1ab/nsp124A4VgCagTa2121AY.430.000093
ORF1ab/nsp124A4VgCagTa2121B.10.000192
ORF1ab/nsp124A4VgCagTa1717B.1.1770.000224
ORF1ab/nsp124A4VgCagTa1616AY.260.000453
ORF1ab/nsp124A4VgCagTa1616AY.390.000395
ORF1ab/nsp124A4VgCagTa1414AY.340.001358
ORF1ab/nsp124A4VgCagTa1414AY.50.000289
ORF1ab/nsp124A4VgCagTa1313B.1.177.70.002143
ORF1ab/nsp124A4VgCagTa1313C.370.001509
ORF1ab/nsp124A4VgCagTa99AY.450.001095
ORF1ab/nsp124A4VgCagTa99B.1.4280.009184
ORF1ab/nsp124A4VgCagTa88B.1.4270.000404
ORF1ab/nsp124A4VgCagTa88P.10.000126
ORF1ab/nsp124A4VgCagTa66AY.1100.000676
ORF1ab/nsp124A4VgCagTa66AY.230.000418
ORF1ab/nsp124A4VgCagTa66AY.440.000037
ORF1ab/nsp124A4VgCagTa66B.1.10.000109
ORF1ab/nsp124A4VgCagTa66B.1.258.170.000624
ORF1ab/nsp124A4VgCagTa66B.1.5750.00182
ORF1ab/nsp124A4VgCagTa55AY.1020.000133
ORF1ab/nsp124A4VgCagTa55AY.46.20.003177
ORF1ab/nsp124A4VgCagTa55B.1.1.1700.006234
ORF1ab/nsp124A4VgCagTa55Q.10.000632
ORF1ab/nsp124A4VgCagTa44AY.120.10.001284
ORF1ab/nsp124A4VgCagTa44B.1.1.5190.000159
ORF1ab/nsp124A4VgCagTa33AY.4.20.000065
ORF1ab/nsp124A4VgCagTa33AY.4.50.000322
ORF1ab/nsp124A4VgCagTa33AY.460.000312
ORF1ab/nsp124A4VgCagTa33AY.620.001307
ORF1ab/nsp124A4VgCagTa33AY.980.000237
ORF1ab/nsp124A4VgCagTa33B.1.177.80.002257
ORF1ab/nsp124A4VgCagTa33B.1.2290.029126
ORF1ab/nsp124A4VgCagTa33B.1.5260.000071
ORF1ab/nsp124A4VgCagTa33B.1.5410.013274
ORF1ab/nsp124A4VgCagTa33B.1.5960.000261
ORF1ab/nsp124A4VgCagTa33L.10.005714
ORF1ab/nsp124A4VgCagTa22AY.1200.000074
ORF1ab/nsp124A4VgCagTa22AY.470.000062
ORF1ab/nsp124A4VgCagTa22AY.7.10.000225
ORF1ab/nsp124A4VgCagTa22AY.98.10.000097
ORF1ab/nsp124A4VgCagTa22AY.99.20.000184
ORF1ab/nsp124A4VgCagTa22B.1.1.280.000622
ORF1ab/nsp124A4VgCagTa22B.1.1.4190.014815
ORF1ab/nsp124A4VgCagTa22B.1.177.170.001642
ORF1ab/nsp124A4VgCagTa22B.1.3510.000059
ORF1ab/nsp124A4VgCagTa22B.1.6200.001892
ORF1ab/nsp124A4VgCagTa22Q.80.00033
ORF1ab/nsp124A4VgCagTa22W.40.002703
ORF1ab/nsp124A4VgCagTa11A.23.10.000704
ORF1ab/nsp124A4VgCagTa11AY.1070.000466
ORF1ab/nsp124A4VgCagTa11AY.1170.000085
ORF1ab/nsp124A4VgCagTa11AY.1180.000063
ORF1ab/nsp124A4VgCagTa11AY.120.20.001285
ORF1ab/nsp124A4VgCagTa11AY.190.00114
ORF1ab/nsp124A4VgCagTa11AY.200.000039
ORF1ab/nsp124A4VgCagTa11AY.290.000016
ORF1ab/nsp124A4VgCagTa11AY.34.10.00051
ORF1ab/nsp124A4VgCagTa11AY.410.000294
ORF1ab/nsp124A4VgCagTa11AY.46.60.000072
ORF1ab/nsp124A4VgCagTa11AY.5.30.000337
ORF1ab/nsp124A4VgCagTa11AY.570.000656
ORF1ab/nsp124A4VgCagTa11AY.60.000041
ORF1ab/nsp124A4VgCagTa11AY.680.000274
ORF1ab/nsp124A4VgCagTa11AY.75.10.00018
ORF1ab/nsp124A4VgCagTa11AY.820.001357
ORF1ab/nsp124A4VgCagTa11AY.910.00073
ORF1ab/nsp124A4VgCagTa11B.1.1.1110.014706
ORF1ab/nsp124A4VgCagTa11B.1.1.2140.000055
ORF1ab/nsp124A4VgCagTa11B.1.1.330.000421
ORF1ab/nsp124A4VgCagTa11B.1.1.4180.022727
ORF1ab/nsp124A4VgCagTa11B.1.1.500.000679
ORF1ab/nsp124A4VgCagTa11B.1.1.5260.003546
ORF1ab/nsp124A4VgCagTa11B.1.1570.002985
ORF1ab/nsp124A4VgCagTa11B.1.160.300.002976
ORF1ab/nsp124A4VgCagTa11B.1.177.440.000519
ORF1ab/nsp124A4VgCagTa11B.1.177.560.000668
ORF1ab/nsp124A4VgCagTa11B.1.177.870.000728
ORF1ab/nsp124A4VgCagTa11B.1.1920.009259
ORF1ab/nsp124A4VgCagTa11B.1.214.20.0006
ORF1ab/nsp124A4VgCagTa11B.1.2210.000071
ORF1ab/nsp124A4VgCagTa11B.1.221.20.004016
ORF1ab/nsp124A4VgCagTa11B.1.2430.00007
ORF1ab/nsp124A4VgCagTa11B.1.258.110.000396
ORF1ab/nsp124A4VgCagTa11B.1.3110.000275
ORF1ab/nsp124A4VgCagTa11B.1.36.360.000602
ORF1ab/nsp124A4VgCagTa11B.1.36.390.002217
ORF1ab/nsp124A4VgCagTa11B.1.5170.000427
ORF1ab/nsp124A4VgCagTa11B.1.5610.000397
ORF1ab/nsp124A4VgCagTa11B.1.5800.004065
ORF1ab/nsp124A4VgCagTa11B.1.6050.005952
ORF1ab/nsp124A4VgCagTa11B.1.617.10.000129
ORF1ab/nsp124A4VgCagTa11C.37.10.002618
ORF1ab/nsp124A4VgCagTa11D.20.000075
ORF1ab/nsp124A4VgCagTa11P.1.140.000048
ORF1ab/nsp124A4VgCagTa11P.1.70.000319
ORF1ab/nsp124A4VgCagTa11P.20.000187
ORF1ab/nsp124A4VgCagTa11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.