CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 4

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp124A4VA4396VnonsyngCagTa22802280113451-13453
ORF1ab/nsp124A4TA4396TnonsynGcaAca511511113451-13453
ORF1ab/nsp124A4AA4396AsyngcAgcG3112620.84244413451-13453
ORF1ab/nsp124A4AA4396AsyngcAgcC311370.11897113451-13453
ORF1ab/nsp124A4AA4396AsyngcAgcT311120.038585213451-13453
ORF1ab/nsp124A4delA4396deldelGCA---103103113451-13453
ORF1ab/nsp124A4SA4396SnonsynGcaTca7272113451-13453
ORF1ab/nsp124A4EA4396EnonsyngCagAa2929113451-13453
ORF1ab/nsp124A4PA4396PnonsynGcaCca88113451-13453
ORF1ab/nsp124A4del1A4396del1delgcAgc-55113451-13453
ORF1ab/nsp124A4GA4396GnonsyngCagGa22113451-13453
ORF1ab/nsp124A4del2A4396del2delgCAg--11113451-13453
ORF1ab/nsp124A4LA4396LnonsynGCaTTa11113451-13453

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp124A4VgCagTa22802280All0.000436
ORF1ab/nsp124A4VgCagTa920920AY.40.001432
ORF1ab/nsp124A4TGcaAca511511All0.000098
ORF1ab/nsp124A4TGcaAca423423B.1.1.70.000379
ORF1ab/nsp124A4VgCagTa329329B.1.5700.967647
ORF1ab/nsp124A4AgcAgcG262311All0.00005
ORF1ab/nsp124A4AgcAgcC37311All0.000007
ORF1ab/nsp124A4AgcAgcT12311All0.000002
ORF1ab/nsp124A4VgCagTa304304B.1.1.70.000272
ORF1ab/nsp124A4VgCagTa117117AY.1030.000726
ORF1ab/nsp124A4delGCA---103103All0.00002
ORF1ab/nsp124A4SGcaTca7272All0.000014
ORF1ab/nsp124A4AgcAgcG7272AY.1040.142857
ORF1ab/nsp124A4VgCagTa5555B.1.617.20.000207
ORF1ab/nsp124A4VgCagTa5555B.1.6370.004019
ORF1ab/nsp124A4VgCagTa4343AY.30.000428
ORF1ab/nsp124A4AgcAgcG3839B.1.617.20.000143
ORF1ab/nsp124A4AgcAgcC139B.1.617.20.000004
ORF1ab/nsp124A4SGcaTca3838AY.1030.000236
ORF1ab/nsp124A4VgCagTa3333B.1.20.000291
ORF1ab/nsp124A4EgCagAa2929All0.000006
ORF1ab/nsp124A4VgCagTa2929B.1.2580.00193
ORF1ab/nsp124A4AgcAgcG2125AY.40.000033
ORF1ab/nsp124A4AgcAgcC425AY.40.000006
ORF1ab/nsp124A4VgCagTa2424AY.250.000144
ORF1ab/nsp124A4delGCA---2424B.1.1.70.000021
ORF1ab/nsp124A4VgCagTa2222B.1.4290.000518
ORF1ab/nsp124A4VgCagTa2121AY.430.000093
ORF1ab/nsp124A4VgCagTa2121B.10.000192
ORF1ab/nsp124A4AgcAgcG1919AY.30.000189
ORF1ab/nsp124A4AgcAgcG1519B.1.1.70.000013
ORF1ab/nsp124A4AgcAgcT219B.1.1.70.000002
ORF1ab/nsp124A4AgcAgcC219B.1.1.70.000002
ORF1ab/nsp124A4AgcAgcG1919B.1.36.220.022947
ORF1ab/nsp124A4TGcaAca1818AY.40.000028
ORF1ab/nsp124A4AgcAgcC1818B.1.10.000327
ORF1ab/nsp124A4VgCagTa1717B.1.1770.000224
ORF1ab/nsp124A4VgCagTa1616AY.260.000453
ORF1ab/nsp124A4VgCagTa1616AY.390.000395
ORF1ab/nsp124A4TGcaAca1414AY.1030.000087
ORF1ab/nsp124A4VgCagTa1414AY.340.001358
ORF1ab/nsp124A4VgCagTa1414AY.50.000289
ORF1ab/nsp124A4VgCagTa1313B.1.177.70.002143
ORF1ab/nsp124A4VgCagTa1313C.370.001509
ORF1ab/nsp124A4TGcaAca1212AY.46.30.011204
ORF1ab/nsp124A4delGCA---1212B.1.177.860.002201
ORF1ab/nsp124A4AgcAgcG1010AY.1030.000062
ORF1ab/nsp124A4AgcAgcG1010B.1.3510.000297
ORF1ab/nsp124A4AgcAgcG1010B.1.621.10.005058
ORF1ab/nsp124A4VgCagTa99AY.450.001095
ORF1ab/nsp124A4VgCagTa99B.1.4280.009184
ORF1ab/nsp124A4PGcaCca88All0.000002
ORF1ab/nsp124A4EgCagAa88AY.40.000012
ORF1ab/nsp124A4AgcAgcG88AY.980.000632
ORF1ab/nsp124A4VgCagTa88B.1.4270.000404
ORF1ab/nsp124A4AgcAgcT68B.1.4290.000141
ORF1ab/nsp124A4AgcAgcG18B.1.4290.000024
ORF1ab/nsp124A4AgcAgcC18B.1.4290.000024
ORF1ab/nsp124A4VgCagTa88P.10.000126
ORF1ab/nsp124A4TGcaAca77AY.250.000042
ORF1ab/nsp124A4delGCA---77AY.40.000011
ORF1ab/nsp124A4SGcaTca77AY.450.000852
ORF1ab/nsp124A4delGCA---77B.10.000064
ORF1ab/nsp124A4VgCagTa66AY.1100.000676
ORF1ab/nsp124A4VgCagTa66AY.230.000418
ORF1ab/nsp124A4VgCagTa66AY.440.000037
ORF1ab/nsp124A4VgCagTa66B.1.10.000109
ORF1ab/nsp124A4VgCagTa66B.1.258.170.000624
ORF1ab/nsp124A4VgCagTa66B.1.5750.00182
ORF1ab/nsp124A4TGcaAca66B.1.617.20.000023
ORF1ab/nsp124A4del1gcAgc-55All0.000001
ORF1ab/nsp124A4VgCagTa55AY.1020.000133
ORF1ab/nsp124A4AgcAgcG25AY.250.000012
ORF1ab/nsp124A4AgcAgcT25AY.250.000012
ORF1ab/nsp124A4AgcAgcC15AY.250.000006
ORF1ab/nsp124A4EgCagAa55AY.290.000079
ORF1ab/nsp124A4VgCagTa55AY.46.20.003177
ORF1ab/nsp124A4AgcAgcG55AY.99.20.000461
ORF1ab/nsp124A4VgCagTa55B.1.1.1700.006234
ORF1ab/nsp124A4VgCagTa55Q.10.000632
ORF1ab/nsp124A4VgCagTa44AY.120.10.001284
ORF1ab/nsp124A4delGCA---44AY.230.000279
ORF1ab/nsp124A4SGcaTca44AY.430.000018
ORF1ab/nsp124A4delGCA---44AY.430.000018
ORF1ab/nsp124A4AgcAgcG44AY.440.000024
ORF1ab/nsp124A4SGcaTca44B.10.000037
ORF1ab/nsp124A4TGcaAca44B.1.10.000073
ORF1ab/nsp124A4delGCA---44B.1.10.000073
ORF1ab/nsp124A4VgCagTa44B.1.1.5190.000159
ORF1ab/nsp124A4SGcaTca44B.1.1.70.000004
ORF1ab/nsp124A4delGCA---44B.1.1770.000053
ORF1ab/nsp124A4AgcAgcG44B.1.36.10.004561
ORF1ab/nsp124A4EgCagAa44B.1.617.20.000015
ORF1ab/nsp124A4VgCagTa33AY.4.20.000065
ORF1ab/nsp124A4VgCagTa33AY.4.50.000322
ORF1ab/nsp124A4VgCagTa33AY.460.000312
ORF1ab/nsp124A4VgCagTa33AY.620.001307
ORF1ab/nsp124A4VgCagTa33AY.980.000237
ORF1ab/nsp124A4VgCagTa33B.1.177.80.002257
ORF1ab/nsp124A4delGCA---33B.1.20.000026
ORF1ab/nsp124A4VgCagTa33B.1.2290.029126
ORF1ab/nsp124A4AgcAgcG33B.1.258.170.000312
ORF1ab/nsp124A4VgCagTa33B.1.5260.000071
ORF1ab/nsp124A4VgCagTa33B.1.5410.013274
ORF1ab/nsp124A4VgCagTa33B.1.5960.000261
ORF1ab/nsp124A4SGcaTca33B.1.617.20.000011
ORF1ab/nsp124A4delGCA---33B.1.617.20.000011
ORF1ab/nsp124A4VgCagTa33L.10.005714
ORF1ab/nsp124A4AgcAgcC23P.10.000032
ORF1ab/nsp124A4AgcAgcT13P.10.000016
ORF1ab/nsp124A4GgCagGa22All0
ORF1ab/nsp124A4EgCagAa22AY.1190.000071
ORF1ab/nsp124A4VgCagTa22AY.1200.000074
ORF1ab/nsp124A4TGcaAca22AY.1210.000271
ORF1ab/nsp124A4AgcAgcG22AY.390.000049
ORF1ab/nsp124A4delGCA---22AY.4.50.000215
ORF1ab/nsp124A4AgcAgcG22AY.430.000009
ORF1ab/nsp124A4TGcaAca22AY.440.000012
ORF1ab/nsp124A4SGcaTca22AY.46.60.000144
ORF1ab/nsp124A4VgCagTa22AY.470.000062
ORF1ab/nsp124A4EgCagAa22AY.50.000041
ORF1ab/nsp124A4VgCagTa22AY.7.10.000225
ORF1ab/nsp124A4VgCagTa22AY.98.10.000097
ORF1ab/nsp124A4VgCagTa22AY.99.20.000184
ORF1ab/nsp124A4TGcaAca22B.1.1.1350.00939
ORF1ab/nsp124A4VgCagTa22B.1.1.280.000622
ORF1ab/nsp124A4VgCagTa22B.1.1.4190.014815
ORF1ab/nsp124A4AgcAgcC22B.1.1.5210.010695
ORF1ab/nsp124A4EgCagAa22B.1.1.70.000002
ORF1ab/nsp124A4PGcaCca22B.1.1.70.000002
ORF1ab/nsp124A4TGcaAca22B.1.1770.000026
ORF1ab/nsp124A4AgcAgcG22B.1.177.120.000303
ORF1ab/nsp124A4VgCagTa22B.1.177.170.001642
ORF1ab/nsp124A4delGCA---22B.1.177.600.000437
ORF1ab/nsp124A4VgCagTa22B.1.3510.000059
ORF1ab/nsp124A4EgCagAa22B.1.36.290.001035
ORF1ab/nsp124A4VgCagTa22B.1.6200.001892
ORF1ab/nsp124A4delGCA---22P.10.000032
ORF1ab/nsp124A4VgCagTa22Q.80.00033
ORF1ab/nsp124A4VgCagTa22W.40.002703
ORF1ab/nsp124A4AgcAgcC11A0.000387
ORF1ab/nsp124A4VgCagTa11A.23.10.000704
ORF1ab/nsp124A4LGCaTTa11All0
ORF1ab/nsp124A4del2gCAg--11All0
ORF1ab/nsp124A4delGCA---11AU.30.00211
ORF1ab/nsp124A4AgcAgcG11AY.1050.000643
ORF1ab/nsp124A4TGcaAca11AY.1050.000643
ORF1ab/nsp124A4VgCagTa11AY.1070.000466
ORF1ab/nsp124A4SGcaTca11AY.1100.000113
ORF1ab/nsp124A4delGCA---11AY.1110.000183
ORF1ab/nsp124A4VgCagTa11AY.1170.000085
ORF1ab/nsp124A4AgcAgcC11AY.1180.000063
ORF1ab/nsp124A4VgCagTa11AY.1180.000063
ORF1ab/nsp124A4delGCA---11AY.1180.000063
ORF1ab/nsp124A4TGcaAca11AY.1190.000035
ORF1ab/nsp124A4delGCA---11AY.1190.000035
ORF1ab/nsp124A4VgCagTa11AY.120.20.001285
ORF1ab/nsp124A4VgCagTa11AY.190.00114
ORF1ab/nsp124A4AgcAgcG11AY.190.00114
ORF1ab/nsp124A4VgCagTa11AY.200.000039
ORF1ab/nsp124A4EgCagAa11AY.240.000431
ORF1ab/nsp124A4SGcaTca11AY.250.000006
ORF1ab/nsp124A4delGCA---11AY.250.000006
ORF1ab/nsp124A4VgCagTa11AY.290.000016
ORF1ab/nsp124A4delGCA---11AY.30.00001
ORF1ab/nsp124A4TGcaAca11AY.30.00001
ORF1ab/nsp124A4AgcAgcG11AY.340.000097
ORF1ab/nsp124A4VgCagTa11AY.34.10.00051
ORF1ab/nsp124A4AgcAgcG11AY.350.000233
ORF1ab/nsp124A4AgcAgcG11AY.360.000148
ORF1ab/nsp124A4TGcaAca11AY.390.000025
ORF1ab/nsp124A4SGcaTca11AY.4.20.000022
ORF1ab/nsp124A4VgCagTa11AY.410.000294
ORF1ab/nsp124A4EgCagAa11AY.430.000004
ORF1ab/nsp124A4PGcaCca11AY.430.000004
ORF1ab/nsp124A4TGcaAca11AY.430.000004
ORF1ab/nsp124A4SGcaTca11AY.440.000006
ORF1ab/nsp124A4delGCA---11AY.440.000006
ORF1ab/nsp124A4TGcaAca11AY.450.000122
ORF1ab/nsp124A4GgCagGa11AY.460.000104
ORF1ab/nsp124A4AgcAgcG11AY.46.60.000072
ORF1ab/nsp124A4VgCagTa11AY.46.60.000072
ORF1ab/nsp124A4TGcaAca11AY.46.60.000072
ORF1ab/nsp124A4AgcAgcG11AY.50.000021
ORF1ab/nsp124A4VgCagTa11AY.5.30.000337
ORF1ab/nsp124A4SGcaTca11AY.5.40.000277
ORF1ab/nsp124A4VgCagTa11AY.570.000656
ORF1ab/nsp124A4VgCagTa11AY.60.000041
ORF1ab/nsp124A4VgCagTa11AY.680.000274
ORF1ab/nsp124A4delGCA---11AY.750.000056
ORF1ab/nsp124A4VgCagTa11AY.75.10.00018
ORF1ab/nsp124A4delGCA---11AY.75.10.00018
ORF1ab/nsp124A4TGcaAca11AY.780.001541
ORF1ab/nsp124A4VgCagTa11AY.820.001357
ORF1ab/nsp124A4TGcaAca11AY.90.000068
ORF1ab/nsp124A4delGCA---11AY.9.20.000037
ORF1ab/nsp124A4AgcAgcG11AY.900.000684
ORF1ab/nsp124A4VgCagTa11AY.910.00073
ORF1ab/nsp124A4SGcaTca11AY.920.000287
ORF1ab/nsp124A4LGCaTTa11AY.990.001049
ORF1ab/nsp124A4delGCA---11AY.990.001049
ORF1ab/nsp124A4PGcaCca11B.10.000009
ORF1ab/nsp124A4AgcAgcG11B.10.000009
ORF1ab/nsp124A4EgCagAa11B.10.000009
ORF1ab/nsp124A4PGcaCca11B.1.10.000018
ORF1ab/nsp124A4delGCA---11B.1.1.10.000327
ORF1ab/nsp124A4VgCagTa11B.1.1.1110.014706
ORF1ab/nsp124A4VgCagTa11B.1.1.2140.000055
ORF1ab/nsp124A4TGcaAca11B.1.1.2160.00089
ORF1ab/nsp124A4VgCagTa11B.1.1.330.000421
ORF1ab/nsp124A4delGCA---11B.1.1.3480.000796
ORF1ab/nsp124A4AgcAgcC11B.1.1.3720.000689
ORF1ab/nsp124A4TGcaAca11B.1.1.3750.011905
ORF1ab/nsp124A4SGcaTca11B.1.1.390.00051
ORF1ab/nsp124A4EgCagAa11B.1.1.4160.000905
ORF1ab/nsp124A4VgCagTa11B.1.1.4180.022727
ORF1ab/nsp124A4VgCagTa11B.1.1.500.000679
ORF1ab/nsp124A4VgCagTa11B.1.1.5260.003546
ORF1ab/nsp124A4AgcAgcC11B.1.1.630.000386
ORF1ab/nsp124A4del1gcAgc-11B.1.1.70.000001
ORF1ab/nsp124A4delGCA---11B.1.1.700.000341
ORF1ab/nsp124A4AgcAgcG11B.1.1.700.000341
ORF1ab/nsp124A4SGcaTca11B.1.1080.005814
ORF1ab/nsp124A4TGcaAca11B.1.1420.002899
ORF1ab/nsp124A4VgCagTa11B.1.1570.002985
ORF1ab/nsp124A4AgcAgcG11B.1.1600.000031
ORF1ab/nsp124A4VgCagTa11B.1.160.300.002976
ORF1ab/nsp124A4VgCagTa11B.1.177.440.000519
ORF1ab/nsp124A4VgCagTa11B.1.177.560.000668
ORF1ab/nsp124A4TGcaAca11B.1.177.600.000218
ORF1ab/nsp124A4AgcAgcC11B.1.177.680.015152
ORF1ab/nsp124A4delGCA---11B.1.177.730.000566
ORF1ab/nsp124A4TGcaAca11B.1.177.810.000189
ORF1ab/nsp124A4delGCA---11B.1.177.830.001481
ORF1ab/nsp124A4VgCagTa11B.1.177.870.000728
ORF1ab/nsp124A4VgCagTa11B.1.1920.009259
ORF1ab/nsp124A4SGcaTca11B.1.20.000009
ORF1ab/nsp124A4del2gCAg--11B.1.20.000009
ORF1ab/nsp124A4VgCagTa11B.1.214.20.0006
ORF1ab/nsp124A4VgCagTa11B.1.2210.000071
ORF1ab/nsp124A4VgCagTa11B.1.221.20.004016
ORF1ab/nsp124A4VgCagTa11B.1.2430.00007
ORF1ab/nsp124A4TGcaAca11B.1.2430.00007
ORF1ab/nsp124A4PGcaCca11B.1.2430.00007
ORF1ab/nsp124A4del1gcAgc-11B.1.2580.000067
ORF1ab/nsp124A4delGCA---11B.1.258.100.011364
ORF1ab/nsp124A4VgCagTa11B.1.258.110.000396
ORF1ab/nsp124A4VgCagTa11B.1.3110.000275
ORF1ab/nsp124A4AgcAgcG11B.1.3370.005587
ORF1ab/nsp124A4AgcAgcG11B.1.360.000146
ORF1ab/nsp124A4delGCA---11B.1.360.000146
ORF1ab/nsp124A4VgCagTa11B.1.36.360.000602
ORF1ab/nsp124A4VgCagTa11B.1.36.390.002217
ORF1ab/nsp124A4PGcaCca11B.1.3960.000706
ORF1ab/nsp124A4GgCagGa11B.1.3990.001934
ORF1ab/nsp124A4delGCA---11B.1.4150.014286
ORF1ab/nsp124A4del1gcAgc-11B.1.4270.00005
ORF1ab/nsp124A4TGcaAca11B.1.4290.000024
ORF1ab/nsp124A4delGCA---11B.1.4560.003268
ORF1ab/nsp124A4TGcaAca11B.1.466.20.000391
ORF1ab/nsp124A4VgCagTa11B.1.5170.000427
ORF1ab/nsp124A4delGCA---11B.1.5330.009615
ORF1ab/nsp124A4VgCagTa11B.1.5610.000397
ORF1ab/nsp124A4VgCagTa11B.1.5800.004065
ORF1ab/nsp124A4delGCA---11B.1.5850.027778
ORF1ab/nsp124A4AgcAgcT11B.1.5960.000087
ORF1ab/nsp124A4VgCagTa11B.1.6050.005952
ORF1ab/nsp124A4VgCagTa11B.1.617.10.000129
ORF1ab/nsp124A4del1gcAgc-11B.1.617.20.000004
ORF1ab/nsp124A4TGcaAca11B.1.6200.000946
ORF1ab/nsp124A4TGcaAca11B.1.6370.000073
ORF1ab/nsp124A4AgcAgcG11B.1.6370.000073
ORF1ab/nsp124A4AgcAgcG11B.400.000364
ORF1ab/nsp124A4VgCagTa11C.37.10.002618
ORF1ab/nsp124A4VgCagTa11D.20.000075
ORF1ab/nsp124A4PGcaCca11D.20.000075
ORF1ab/nsp124A4delGCA---11P.1.120.000484
ORF1ab/nsp124A4AgcAgcC11P.1.140.000048
ORF1ab/nsp124A4VgCagTa11P.1.140.000048
ORF1ab/nsp124A4delGCA---11P.1.150.000232
ORF1ab/nsp124A4VgCagTa11P.1.70.000319
ORF1ab/nsp124A4VgCagTa11P.20.000187
ORF1ab/nsp124A4delGCA---11P.20.000187
ORF1ab/nsp124A4VgCagTa11Q.70.001111
ORF1ab/nsp124A4del1gcAgc-11Q.80.000165
ORF1ab/nsp124A4SGcaTca11R.10.00009