CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 398

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12398V398VV4790VsyngtAgtG116211500.98967314632-14634
ORF1ab/nsp12398V398VV4790VsyngtAgtT1162120.01032714632-14634
ORF1ab/nsp12398V398IV4790InonsynGtaAta9090114632-14634
ORF1ab/nsp12398V398delV4790deldelGTA---4444114632-14634
ORF1ab/nsp12398V398AV4790AnonsyngTagCa1111114632-14634
ORF1ab/nsp12398V398LV4790LnonsynGtaTta980.88888914632-14634
ORF1ab/nsp12398V398LV4790LnonsynGtaCta910.11111114632-14634
ORF1ab/nsp12398V398EV4790EnonsyngTagAa44114632-14634
ORF1ab/nsp12398V398SV4790SnonsynGTaTCa22114632-14634
ORF1ab/nsp12398V398del2V4790del2delGTa--a22114632-14634
ORF1ab/nsp12398V398GV4790GnonsyngTagGa22114632-14634
ORF1ab/nsp12398V398del1V4790del1delGta-ta11114632-14634

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12398V398VgtAgtG11501162All0.00022
ORF1ab/nsp12398V398VgtAgtT121162All0.000002
ORF1ab/nsp12398V398VgtAgtG709709B.1.3490.506791
ORF1ab/nsp12398V398IGtaAta9090All0.000017
ORF1ab/nsp12398V398VgtAgtG6464B.1.20.000564
ORF1ab/nsp12398V398VgtAgtG5454B.1.1.3170.022231
ORF1ab/nsp12398V398delGTA---4444All0.000008
ORF1ab/nsp12398V398VgtAgtG4040B.10.000366
ORF1ab/nsp12398V398VgtAgtG3838B.1.4270.001919
ORF1ab/nsp12398V398VgtAgtG3434AY.250.000205
ORF1ab/nsp12398V398VgtAgtG3033B.1.1.70.000027
ORF1ab/nsp12398V398VgtAgtT333B.1.1.70.000003
ORF1ab/nsp12398V398VgtAgtG2323AY.40.000036
ORF1ab/nsp12398V398delGTA---1919B.1.1.70.000017
ORF1ab/nsp12398V398IGtaAta1818B.1.1.70.000016
ORF1ab/nsp12398V398VgtAgtG1717AY.390.00042
ORF1ab/nsp12398V398VgtAgtG1515AY.30.000149
ORF1ab/nsp12398V398IGtaAta1313AY.40.00002
ORF1ab/nsp12398V398AgTagCa1111All0.000002
ORF1ab/nsp12398V398VgtAgtG1010B.1.1770.000132
ORF1ab/nsp12398V398LGtaTta89All0.000002
ORF1ab/nsp12398V398LGtaCta19All0
ORF1ab/nsp12398V398VgtAgtG88AY.1030.00005
ORF1ab/nsp12398V398VgtAgtG88AY.1210.001083
ORF1ab/nsp12398V398VgtAgtG88B.1.617.20.00003
ORF1ab/nsp12398V398VgtAgtG77B.1.3250.048276
ORF1ab/nsp12398V398VgtAgtG77B.1.438.10.000751
ORF1ab/nsp12398V398VgtAgtT56AY.430.000022
ORF1ab/nsp12398V398VgtAgtG16AY.430.000004
ORF1ab/nsp12398V398IGtaAta66B.1.1.3010.007075
ORF1ab/nsp12398V398VgtAgtG55AY.440.00003
ORF1ab/nsp12398V398IGtaAta55B.1.258.170.00052
ORF1ab/nsp12398V398EgTagAa44All0.000001
ORF1ab/nsp12398V398VgtAgtG44AY.1000.000184
ORF1ab/nsp12398V398IGtaAta44AY.430.000018
ORF1ab/nsp12398V398IGtaAta44B.1.1.2820.046512
ORF1ab/nsp12398V398IGtaAta33AY.4.20.000065
ORF1ab/nsp12398V398IGtaAta33AY.440.000018
ORF1ab/nsp12398V398IGtaAta33AY.46.40.000494
ORF1ab/nsp12398V398VgtAgtG33AY.46.60.000217
ORF1ab/nsp12398V398VgtAgtG33B.1.10.000054
ORF1ab/nsp12398V398VgtAgtG33B.1.1.630.001157
ORF1ab/nsp12398V398EgTagAa33B.1.1.70.000003
ORF1ab/nsp12398V398VgtAgtG33B.1.1600.000094
ORF1ab/nsp12398V398VgtAgtG33B.1.5260.000071
ORF1ab/nsp12398V398VgtAgtG33B.1.5610.001191
ORF1ab/nsp12398V398VgtAgtG33B.1.5810.028302
ORF1ab/nsp12398V398IGtaAta33B.1.617.20.000011
ORF1ab/nsp12398V398IGtaAta33B.400.001093
ORF1ab/nsp12398V398GgTagGa22All0
ORF1ab/nsp12398V398del2GTa--a22All0
ORF1ab/nsp12398V398SGTaTCa22All0
ORF1ab/nsp12398V398IGtaAta22AY.1030.000012
ORF1ab/nsp12398V398VgtAgtG22AY.1190.000071
ORF1ab/nsp12398V398VgtAgtG22AY.16.10.00094
ORF1ab/nsp12398V398VgtAgtG22AY.200.000078
ORF1ab/nsp12398V398delGTA---22AY.40.000003
ORF1ab/nsp12398V398IGtaAta22AY.4.40.000818
ORF1ab/nsp12398V398VgtAgtG22AY.420.00008
ORF1ab/nsp12398V398LGtaTta22AY.440.000012
ORF1ab/nsp12398V398IGtaAta22AY.50.000041
ORF1ab/nsp12398V398VgtAgtG22AY.590.001059
ORF1ab/nsp12398V398VgtAgtG22AY.610.00021
ORF1ab/nsp12398V398VgtAgtG22AY.790.002421
ORF1ab/nsp12398V398AgTagCa22B0.000256
ORF1ab/nsp12398V398LGtaTta22B.1.10.000036
ORF1ab/nsp12398V398VgtAgtG22B.1.1.3350.025974
ORF1ab/nsp12398V398IGtaAta22B.1.1.3970.004505
ORF1ab/nsp12398V398VgtAgtG22B.1.1.5190.000079
ORF1ab/nsp12398V398LGtaTta12B.1.1.70.000001
ORF1ab/nsp12398V398LGtaCta12B.1.1.70.000001
ORF1ab/nsp12398V398VgtAgtG22B.1.177.210.000153
ORF1ab/nsp12398V398VgtAgtG22B.1.360.000292
ORF1ab/nsp12398V398VgtAgtG22B.1.5960.000174
ORF1ab/nsp12398V398delGTA---22B.1.617.20.000008
ORF1ab/nsp12398V398VgtAgtG22C.370.000232
ORF1ab/nsp12398V398IGtaAta22P.10.000032
ORF1ab/nsp12398V398VgtAgtT11A.20.000662
ORF1ab/nsp12398V398del1Gta-ta11All0
ORF1ab/nsp12398V398delGTA---11AY.1000.000046
ORF1ab/nsp12398V398IGtaAta11AY.1000.000046
ORF1ab/nsp12398V398VgtAgtG11AY.1020.000027
ORF1ab/nsp12398V398delGTA---11AY.1110.000183
ORF1ab/nsp12398V398VgtAgtG11AY.1130.000142
ORF1ab/nsp12398V398VgtAgtG11AY.1180.000063
ORF1ab/nsp12398V398VgtAgtG11AY.170.008197
ORF1ab/nsp12398V398delGTA---11AY.230.00007
ORF1ab/nsp12398V398delGTA---11AY.250.000006
ORF1ab/nsp12398V398IGtaAta11AY.250.000006
ORF1ab/nsp12398V398SGTaTCa11AY.250.000006
ORF1ab/nsp12398V398del1Gta-ta11AY.250.000006
ORF1ab/nsp12398V398LGtaTta11AY.250.000006
ORF1ab/nsp12398V398IGtaAta11AY.260.000028
ORF1ab/nsp12398V398IGtaAta11AY.360.000148
ORF1ab/nsp12398V398AgTagCa11AY.40.000002
ORF1ab/nsp12398V398VgtAgtG11AY.4.20.000022
ORF1ab/nsp12398V398delGTA---11AY.4.50.000107
ORF1ab/nsp12398V398VgtAgtG11AY.410.000294
ORF1ab/nsp12398V398LGtaTta11AY.430.000004
ORF1ab/nsp12398V398AgTagCa11AY.440.000006
ORF1ab/nsp12398V398delGTA---11AY.46.20.000635
ORF1ab/nsp12398V398IGtaAta11AY.570.000656
ORF1ab/nsp12398V398delGTA---11AY.680.000274
ORF1ab/nsp12398V398GgTagGa11AY.720.001361
ORF1ab/nsp12398V398VgtAgtG11AY.75.10.00018
ORF1ab/nsp12398V398delGTA---11AY.75.10.00018
ORF1ab/nsp12398V398delGTA---11AY.90.000068
ORF1ab/nsp12398V398delGTA---11AY.9.20.000037
ORF1ab/nsp12398V398AgTagCa11AY.980.000079
ORF1ab/nsp12398V398delGTA---11AY.99.10.001553
ORF1ab/nsp12398V398IGtaAta11B0.000128
ORF1ab/nsp12398V398AgTagCa11B.10.000009
ORF1ab/nsp12398V398del2GTa--a11B.10.000009
ORF1ab/nsp12398V398delGTA---11B.1.10.000018
ORF1ab/nsp12398V398IGtaAta11B.1.10.000018
ORF1ab/nsp12398V398VgtAgtG11B.1.1.100.001115
ORF1ab/nsp12398V398VgtAgtT11B.1.1.130.035714
ORF1ab/nsp12398V398VgtAgtG11B.1.1.2140.000055
ORF1ab/nsp12398V398LGtaTta11B.1.1.2210.010101
ORF1ab/nsp12398V398IGtaAta11B.1.1.2310.003096
ORF1ab/nsp12398V398IGtaAta11B.1.1.2540.011236
ORF1ab/nsp12398V398delGTA---11B.1.1.3060.000438
ORF1ab/nsp12398V398IGtaAta11B.1.1.370.000193
ORF1ab/nsp12398V398VgtAgtG11B.1.1.4480.002033
ORF1ab/nsp12398V398delGTA---11B.1.1.460.004367
ORF1ab/nsp12398V398VgtAgtG11B.1.1.5250.005464
ORF1ab/nsp12398V398del2GTa--a11B.1.1.70.000001
ORF1ab/nsp12398V398AgTagCa11B.1.1.70.000001
ORF1ab/nsp12398V398delGTA---11B.1.1600.000031
ORF1ab/nsp12398V398VgtAgtG11B.1.1700.00431
ORF1ab/nsp12398V398SGTaTCa11B.1.1770.000013
ORF1ab/nsp12398V398AgTagCa11B.1.1770.000013
ORF1ab/nsp12398V398delGTA---11B.1.177.160.000664
ORF1ab/nsp12398V398delGTA---11B.1.177.540.000606
ORF1ab/nsp12398V398VgtAgtG11B.1.1870.033333
ORF1ab/nsp12398V398AgTagCa11B.1.20.000009
ORF1ab/nsp12398V398delGTA---11B.1.2210.000071
ORF1ab/nsp12398V398VgtAgtG11B.1.2340.000132
ORF1ab/nsp12398V398VgtAgtG11B.1.2370.004975
ORF1ab/nsp12398V398VgtAgtG11B.1.2400.000216
ORF1ab/nsp12398V398delGTA---11B.1.2580.000067
ORF1ab/nsp12398V398AgTagCa11B.1.2680.010417
ORF1ab/nsp12398V398VgtAgtG11B.1.3670.000792
ORF1ab/nsp12398V398VgtAgtG11B.1.3960.000706
ORF1ab/nsp12398V398VgtAgtG11B.1.4160.001269
ORF1ab/nsp12398V398IGtaAta11B.1.4290.000024
ORF1ab/nsp12398V398IGtaAta11B.1.5170.000427
ORF1ab/nsp12398V398VgtAgtT11B.1.5250.000113
ORF1ab/nsp12398V398delGTA---11B.1.5610.000397
ORF1ab/nsp12398V398VgtAgtG11B.1.5720.025
ORF1ab/nsp12398V398AgTagCa11B.1.5960.000087
ORF1ab/nsp12398V398IGtaAta11B.1.617.10.000129
ORF1ab/nsp12398V398GgTagGa11B.1.617.20.000004
ORF1ab/nsp12398V398VgtAgtT11B.1.6370.000073
ORF1ab/nsp12398V398IGtaAta11C.390.018868
ORF1ab/nsp12398V398EgTagAa11D.20.000075
ORF1ab/nsp12398V398delGTA---11P.1.10.000318
ORF1ab/nsp12398V398VgtAgtG11P.1.20.001156
ORF1ab/nsp12398V398IGtaAta11Q.40.000455