CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 394 | T394T | T4786T | syn | acG | acA | 1698 | 997 | 0.587161 | 14620-14622 |
ORF1ab/nsp12 | 394 | T394T | T4786T | syn | acG | acT | 1698 | 700 | 0.41225 | 14620-14622 |
ORF1ab/nsp12 | 394 | T394T | T4786T | syn | acG | acC | 1698 | 1 | 0.000588928 | 14620-14622 |
ORF1ab/nsp12 | 394 | T394M | T4786M | nonsyn | aCg | aTg | 1401 | 1401 | 1 | 14620-14622 |
ORF1ab/nsp12 | 394 | T394A | T4786A | nonsyn | Acg | Gcg | 134 | 134 | 1 | 14620-14622 |
ORF1ab/nsp12 | 394 | T394del | T4786del | del | ACG | --- | 66 | 66 | 1 | 14620-14622 |
ORF1ab/nsp12 | 394 | T394K | T4786K | nonsyn | aCg | aAg | 7 | 7 | 1 | 14620-14622 |
ORF1ab/nsp12 | 394 | T394R | T4786R | nonsyn | aCg | aGg | 4 | 4 | 1 | 14620-14622 |
ORF1ab/nsp12 | 394 | T394S | T4786S | nonsyn | AcG | TcT | 2 | 1 | 0.5 | 14620-14622 |
ORF1ab/nsp12 | 394 | T394S | T4786S | nonsyn | Acg | Tcg | 2 | 1 | 0.5 | 14620-14622 |
ORF1ab/nsp12 | 394 | T394F | T4786F | nonsyn | ACG | TTT | 1 | 1 | 1 | 14620-14622 |
ORF1ab/nsp12 | 394 | T394I | T4786I | nonsyn | aCG | aTT | 1 | 1 | 1 | 14620-14622 |
ORF1ab/nsp12 | 394 | T394N | T4786N | nonsyn | aCG | aAC | 1 | 1 | 1 | 14620-14622 |
ORF1ab/nsp12 | 394 | T394del1 | T4786del1 | del | acG | ac- | 1 | 1 | 1 | 14620-14622 |
ORF1ab/nsp12 | 394 | T394E | T4786E | nonsyn | ACg | GAg | 1 | 1 | 1 | 14620-14622 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 997 | 1698 | All | 0.000191 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 700 | 1698 | All | 0.000134 |
ORF1ab/nsp12 | 394 | T394T | acG | acC | 1 | 1698 | All | 0 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1401 | 1401 | All | 0.000268 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 559 | 559 | B.1.1.7 | 0.0005 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 330 | 330 | B.1.517 | 0.140905 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 233 | 314 | B.1.1.7 | 0.000209 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 81 | 314 | B.1.1.7 | 0.000073 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 120 | 162 | AY.4 | 0.000187 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 42 | 162 | AY.4 | 0.000065 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 150 | 150 | B.1.160 | 0.004678 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 143 | 143 | B.1.1.526 | 0.507092 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 134 | 134 | All | 0.000026 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 113 | 122 | AY.47 | 0.003515 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 9 | 122 | AY.47 | 0.00028 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 66 | 71 | AY.5 | 0.001363 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 5 | 71 | AY.5 | 0.000103 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 66 | 66 | All | 0.000013 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 57 | 58 | AY.98.1 | 0.002761 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 58 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 51 | 51 | B.1.497 | 0.016053 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 47 | 47 | P.1 | 0.00074 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 46 | 46 | B.1.1.519 | 0.001827 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 46 | 46 | B.1.637 | 0.003361 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 45 | 45 | B.1.526 | 0.001058 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 44 | 44 | AY.4 | 0.000068 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 41 | 41 | Y.1 | 0.525641 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 40 | 40 | B.1.1.50 | 0.027155 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 39 | 39 | AY.9.2 | 0.001432 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 38 | 38 | B.1.1 | 0.000689 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 37 | 37 | B.1.177 | 0.000487 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 22 | 30 | P.1 | 0.000347 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 8 | 30 | P.1 | 0.000126 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 22 | 29 | B.1.617.2 | 0.000083 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 7 | 29 | B.1.617.2 | 0.000026 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 26 | 26 | B.1.1.7 | 0.000023 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 21 | 25 | B.1 | 0.000192 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 4 | 25 | B.1 | 0.000037 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 25 | 25 | B.1.617.2 | 0.000094 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 21 | 21 | B.1.2 | 0.000185 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 12 | 20 | AY.43 | 0.000053 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 8 | 20 | AY.43 | 0.000035 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 17 | 20 | AY.44 | 0.000103 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 3 | 20 | AY.44 | 0.000018 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 20 | 20 | B.1.1.7 | 0.000018 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 20 | 20 | B.1.351 | 0.000595 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 19 | 19 | B.1 | 0.000174 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 15 | 15 | AY.103 | 0.000093 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 14 | 14 | AY.3 | 0.000139 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 7 | 13 | AY.103 | 0.000043 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 6 | 13 | AY.103 | 0.000037 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 13 | 13 | B.1.1.397 | 0.029279 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 13 | 13 | B.1.438.1 | 0.001394 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 12 | 12 | AY.23 | 0.000837 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 11 | 12 | AY.33 | 0.000735 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 12 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 12 | 12 | B.1.1.214 | 0.000665 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 12 | 12 | B.1.1.294 | 0.01519 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 12 | 12 | B.1.2 | 0.000106 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 11 | 11 | AY.54 | 0.001049 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 10 | 10 | B.1.36.29 | 0.005173 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 9 | 9 | B.11 | 0.046154 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 8 | 8 | AY.102 | 0.000212 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 7 | 8 | B.1.1 | 0.000127 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 8 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 8 | 8 | B.1.466.2 | 0.00313 |
ORF1ab/nsp12 | 394 | T394K | aCg | aAg | 7 | 7 | All | 0.000001 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 7 | 7 | B.1.1.317 | 0.002882 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 3 | 6 | AY.3 | 0.00003 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 3 | 6 | AY.3 | 0.00003 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 4 | 6 | AY.39 | 0.000099 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 2 | 6 | AY.39 | 0.000049 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 6 | 6 | B.1.1.214 | 0.000333 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 5 | 6 | B.1.2 | 0.000044 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 6 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 6 | 6 | P.1.7 | 0.001916 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 3 | 5 | AY.102 | 0.00008 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 2 | 5 | AY.102 | 0.000053 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 5 | 5 | AY.106 | 0.001674 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 5 | 5 | B.1.1.222 | 0.00102 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 4 | 5 | B.1.177 | 0.000053 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 5 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 5 | 5 | P.1.12 | 0.00242 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp12 | 394 | T394R | aCg | aGg | 4 | 4 | All | 0.000001 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 4 | 4 | AY.90 | 0.002738 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 4 | 4 | B.1.36.1 | 0.004561 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 4 | 4 | B.1.406 | 0.024242 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 2 | 3 | AY.25 | 0.000012 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 3 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 2 | 3 | B.1.160 | 0.000062 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 3 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 3 | 3 | B.1.36.16 | 0.004274 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 3 | 3 | B.1.618 | 0.012097 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 3 | 3 | B.1.8 | 0.005917 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 3 | 3 | C.30 | 0.005181 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 3 | 3 | L.3 | 0.010638 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp12 | 394 | T394S | Acg | Tcg | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 394 | T394S | AcG | TcT | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 2 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 2 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 2 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 2 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 2 | AY.92 | 0.000287 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 2 | AY.92 | 0.000287 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 2 | 2 | B.1.1.170 | 0.002494 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 2 | B.1.1.284 | 0.000107 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 2 | B.1.1.284 | 0.000107 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 2 | 2 | B.1.1.449 | 0.045455 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 2 | B.1.1.519 | 0.00004 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 2 | B.1.1.519 | 0.00004 |
ORF1ab/nsp12 | 394 | T394S | AcG | TcT | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 394 | T394S | Acg | Tcg | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 2 | 2 | B.1.177.6 | 0.001953 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 2 | 2 | B.1.177.65 | 0.001331 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 2 | 2 | B.1.264 | 0.024691 |
ORF1ab/nsp12 | 394 | T394K | aCg | aAg | 2 | 2 | B.1.391 | 0.002255 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 2 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 2 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 2 | 2 | B.1.473 | 0.038462 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 2 | C.37 | 0.000116 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 2 | C.37 | 0.000116 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp12 | 394 | T394R | aCg | aGg | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp12 | 394 | T394del1 | acG | ac- | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 394 | T394F | ACG | TTT | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 394 | T394I | aCG | aTT | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 394 | T394E | ACg | GAg | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 394 | T394N | aCG | aAC | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp12 | 394 | T394R | aCg | aGg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 394 | T394K | aCg | aAg | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp12 | 394 | T394K | aCg | aAg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp12 | 394 | T394R | aCg | aGg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp12 | 394 | T394E | ACg | GAg | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 394 | T394K | aCg | aAg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 394 | T394del1 | acG | ac- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 394 | T394R | aCg | aGg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.1.219 | 0.005 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.1.421 | 0.030303 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | B.1.1.59 | 0.006494 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp12 | 394 | T394K | aCg | aAg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp12 | 394 | T394F | ACG | TTT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 1 | B.1.238 | 0.014925 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.282 | 0.014925 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | B.1.334 | 0.018182 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp12 | 394 | T394I | aCG | aTT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp12 | 394 | T394N | aCG | aAC | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp12 | 394 | T394K | aCg | aAg | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp12 | 394 | T394T | acG | acC | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | C.8 | 0.004464 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp12 | 394 | T394T | acG | acA | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp12 | 394 | T394A | Acg | Gcg | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp12 | 394 | T394del | ACG | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp12 | 394 | T394M | aCg | aTg | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp12 | 394 | T394T | acG | acT | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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