CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 382 & Codon = gTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12382A382VA4774VnonsyngCtgTt347334700.99913614584-14586

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12382A382VgCtgTt34703473All0.000664
ORF1ab/nsp12382A382VgCtgTt837837AY.40.001303
ORF1ab/nsp12382A382VgCtgTt317317B.1.617.20.001194
ORF1ab/nsp12382A382VgCtgTt233234B.1.1.70.000209
ORF1ab/nsp12382A382VgCtgTt169169AY.1020.004481
ORF1ab/nsp12382A382VgCtgTt169169AY.250.001017
ORF1ab/nsp12382A382VgCtgTt119119B.1.20.001048
ORF1ab/nsp12382A382VgCtgTt118118AY.30.001174
ORF1ab/nsp12382A382VgCtgTt114114B.1.1.2140.006322
ORF1ab/nsp12382A382VgCtgTt9494B.10.000861
ORF1ab/nsp12382A382VgCtgTt8484AY.1030.000522
ORF1ab/nsp12382A382VgCtgTt7575AY.440.000457
ORF1ab/nsp12382A382VgCtgTt6969AY.430.000306
ORF1ab/nsp12382A382VgCtgTt5656AY.4.20.001215
ORF1ab/nsp12382A382VgCtgTt5050AY.390.001236
ORF1ab/nsp12382A382VgCtgTt5050B.1.1.5190.001986
ORF1ab/nsp12382A382VgCtgTt4747B.1.1770.000619
ORF1ab/nsp12382A382VgCtgTt3939AY.200.001516
ORF1ab/nsp12382A382VgCtgTt3535AY.46.60.002527
ORF1ab/nsp12382A382VgCtgTt3434AY.1200.001264
ORF1ab/nsp12382A382VgCtgTt3333B.1.2210.002344
ORF1ab/nsp12382A382VgCtgTt2929B.1.3340.527273
ORF1ab/nsp12382A382VgCtgTt2929R.10.00261
ORF1ab/nsp12382A382VgCtgTt2525AY.5.30.008435
ORF1ab/nsp12382A382VgCtgTt2424AY.50.000496
ORF1ab/nsp12382A382VgCtgTt2222C.390.415094
ORF1ab/nsp12382A382VgCtgTt2020AY.3.10.001705
ORF1ab/nsp12382A382VgCtgTt2020AY.540.001907
ORF1ab/nsp12382A382VgCtgTt2020B.1.10.000363
ORF1ab/nsp12382A382VgCtgTt1919AY.290.0003
ORF1ab/nsp12382A382VgCtgTt1919AY.750.001064
ORF1ab/nsp12382A382VgCtgTt1616B.1.3510.000476
ORF1ab/nsp12382A382VgCtgTt1515AY.470.000467
ORF1ab/nsp12382A382VgCtgTt1515B.1.1600.000468
ORF1ab/nsp12382A382VgCtgTt1313AY.1000.000598
ORF1ab/nsp12382A382VgCtgTt1313B.1.160.140.027542
ORF1ab/nsp12382A382VgCtgTt1212AY.550.011009
ORF1ab/nsp12382A382VgCtgTt1212B.1.36.360.007225
ORF1ab/nsp12382A382VgCtgTt1212B.1.4290.000282
ORF1ab/nsp12382A382VgCtgTt1212B.1.5820.005888
ORF1ab/nsp12382A382VgCtgTt1111AY.99.20.001014
ORF1ab/nsp12382A382VgCtgTt1010AY.1190.000353
ORF1ab/nsp12382A382VgCtgTt1010AY.230.000697
ORF1ab/nsp12382A382VgCtgTt1010AY.610.001048
ORF1ab/nsp12382A382VgCtgTt99AY.1170.000761
ORF1ab/nsp12382A382VgCtgTt99P.10.000142
ORF1ab/nsp12382A382VgCtgTt88AY.1140.001849
ORF1ab/nsp12382A382VgCtgTt88AY.420.000322
ORF1ab/nsp12382A382VgCtgTt77AY.120.10.002247
ORF1ab/nsp12382A382VgCtgTt77AY.4.50.000752
ORF1ab/nsp12382A382VgCtgTt77AY.980.000553
ORF1ab/nsp12382A382VgCtgTt77AY.98.10.000339
ORF1ab/nsp12382A382VgCtgTt77B.1.3750.005738
ORF1ab/nsp12382A382VgCtgTt77B.1.4350.079545
ORF1ab/nsp12382A382VgCtgTt77B.1.5610.002779
ORF1ab/nsp12382A382VgCtgTt66AY.400.005786
ORF1ab/nsp12382A382VgCtgTt66AY.450.00073
ORF1ab/nsp12382A382VgCtgTt66AY.460.000624
ORF1ab/nsp12382A382VgCtgTt66AY.740.000694
ORF1ab/nsp12382A382VgCtgTt66AY.9.10.000502
ORF1ab/nsp12382A382VgCtgTt55AY.1210.000677
ORF1ab/nsp12382A382VgCtgTt55AY.260.000142
ORF1ab/nsp12382A382VgCtgTt55AY.270.000324
ORF1ab/nsp12382A382VgCtgTt55AY.75.10.000902
ORF1ab/nsp12382A382VgCtgTt55B.1.1.10.001633
ORF1ab/nsp12382A382VgCtgTt55B.1.3490.003574
ORF1ab/nsp12382A382VgCtgTt44A0.001548
ORF1ab/nsp12382A382VgCtgTt44AY.220.008368
ORF1ab/nsp12382A382VgCtgTt44AY.39.10.000158
ORF1ab/nsp12382A382VgCtgTt44AY.46.20.002541
ORF1ab/nsp12382A382VgCtgTt44AY.690.000747
ORF1ab/nsp12382A382VgCtgTt44B.1.438.10.000429
ORF1ab/nsp12382A382VgCtgTt44B.1.5960.000349
ORF1ab/nsp12382A382VgCtgTt33AY.1060.001005
ORF1ab/nsp12382A382VgCtgTt33AY.190.003421
ORF1ab/nsp12382A382VgCtgTt33AY.29.10.000662
ORF1ab/nsp12382A382VgCtgTt33AY.330.0002
ORF1ab/nsp12382A382VgCtgTt33AY.360.000445
ORF1ab/nsp12382A382VgCtgTt33AY.640.001786
ORF1ab/nsp12382A382VgCtgTt33AY.680.000821
ORF1ab/nsp12382A382VgCtgTt33AY.950.002283
ORF1ab/nsp12382A382VgCtgTt33B.1.1.2940.003797
ORF1ab/nsp12382A382VgCtgTt33B.1.2390.003663
ORF1ab/nsp12382A382VgCtgTt33B.1.4280.003061
ORF1ab/nsp12382A382VgCtgTt23B.1.5760.001813
ORF1ab/nsp12382A382VgCtgTt33B.1.6310.010101
ORF1ab/nsp12382A382VgCtgTt33C.36.30.001702
ORF1ab/nsp12382A382VgCtgTt33P.1.140.000143
ORF1ab/nsp12382A382VgCtgTt22A.2.50.000998
ORF1ab/nsp12382A382VgCtgTt22AY.10.000791
ORF1ab/nsp12382A382VgCtgTt22AY.1090.001479
ORF1ab/nsp12382A382VgCtgTt22AY.1110.000366
ORF1ab/nsp12382A382VgCtgTt22AY.1180.000125
ORF1ab/nsp12382A382VgCtgTt22AY.340.000194
ORF1ab/nsp12382A382VgCtgTt22AY.7.10.000225
ORF1ab/nsp12382A382VgCtgTt22AY.850.000854
ORF1ab/nsp12382A382VgCtgTt22AY.9.20.000073
ORF1ab/nsp12382A382VgCtgTt22AY.910.001461
ORF1ab/nsp12382A382VgCtgTt22B0.000256
ORF1ab/nsp12382A382VgCtgTt22B.1.1.2220.000408
ORF1ab/nsp12382A382VgCtgTt22B.1.1.2690.002706
ORF1ab/nsp12382A382VgCtgTt22B.1.1.2840.000215
ORF1ab/nsp12382A382VgCtgTt22B.1.1.330.000842
ORF1ab/nsp12382A382VgCtgTt22B.1.177.40.000422
ORF1ab/nsp12382A382VgCtgTt22B.1.177.860.000367
ORF1ab/nsp12382A382VgCtgTt22B.1.36.290.001035
ORF1ab/nsp12382A382VgCtgTt22B.1.4040.002604
ORF1ab/nsp12382A382VgCtgTt22B.1.4270.000101
ORF1ab/nsp12382A382VgCtgTt22B.1.4990.002101
ORF1ab/nsp12382A382VgCtgTt12B.1.5250.000113
ORF1ab/nsp12382A382VgCtgTt22B.1.5260.000047
ORF1ab/nsp12382A382VgCtgTt22B.1.5700.005882
ORF1ab/nsp12382A382VgCtgTt22C.370.000232
ORF1ab/nsp12382A382VgCtgTt22D.20.00015
ORF1ab/nsp12382A382VgCtgTt22N.30.011628
ORF1ab/nsp12382A382VgCtgTt22Q.80.00033
ORF1ab/nsp12382A382VgCtgTt11A.23.10.000704
ORF1ab/nsp12382A382VgCtgTt11AE.50.018519
ORF1ab/nsp12382A382VgCtgTt11AL.10.012987
ORF1ab/nsp12382A382VgCtgTt11AY.1040.001984
ORF1ab/nsp12382A382VgCtgTt11AY.1130.000142
ORF1ab/nsp12382A382VgCtgTt11AY.1160.000287
ORF1ab/nsp12382A382VgCtgTt11AY.120.000316
ORF1ab/nsp12382A382VgCtgTt11AY.120.20.001285
ORF1ab/nsp12382A382VgCtgTt11AY.130.000161
ORF1ab/nsp12382A382VgCtgTt11AY.160.00038
ORF1ab/nsp12382A382VgCtgTt11AY.16.10.00047
ORF1ab/nsp12382A382VgCtgTt11AY.240.000431
ORF1ab/nsp12382A382VgCtgTt11AY.300.000396
ORF1ab/nsp12382A382VgCtgTt11AY.320.000532
ORF1ab/nsp12382A382VgCtgTt11AY.34.10.00051
ORF1ab/nsp12382A382VgCtgTt11AY.350.000233
ORF1ab/nsp12382A382VgCtgTt11AY.4.30.000842
ORF1ab/nsp12382A382VgCtgTt11AY.4.40.000409
ORF1ab/nsp12382A382VgCtgTt11AY.46.40.000165
ORF1ab/nsp12382A382VgCtgTt11AY.500.000799
ORF1ab/nsp12382A382VgCtgTt11AY.510.000909
ORF1ab/nsp12382A382VgCtgTt11AY.520.000814
ORF1ab/nsp12382A382VgCtgTt11AY.560.001605
ORF1ab/nsp12382A382VgCtgTt11AY.580.000907
ORF1ab/nsp12382A382VgCtgTt11AY.590.00053
ORF1ab/nsp12382A382VgCtgTt11AY.60.000041
ORF1ab/nsp12382A382VgCtgTt11AY.630.000387
ORF1ab/nsp12382A382VgCtgTt11AY.700.000209
ORF1ab/nsp12382A382VgCtgTt11AY.770.001127
ORF1ab/nsp12382A382VgCtgTt11AY.790.001211
ORF1ab/nsp12382A382VgCtgTt11AY.900.000684
ORF1ab/nsp12382A382VgCtgTt11AY.940.000443
ORF1ab/nsp12382A382VgCtgTt11B.1.1.1920.002309
ORF1ab/nsp12382A382VgCtgTt11B.1.1.2410.00207
ORF1ab/nsp12382A382VgCtgTt11B.1.1.250.000569
ORF1ab/nsp12382A382VgCtgTt11B.1.1.3060.000438
ORF1ab/nsp12382A382VgCtgTt11B.1.1.3690.000446
ORF1ab/nsp12382A382VgCtgTt11B.1.1110.001175
ORF1ab/nsp12382A382VgCtgTt11B.1.1470.000756
ORF1ab/nsp12382A382VgCtgTt11B.1.160.230.004831
ORF1ab/nsp12382A382VgCtgTt11B.1.177.420.000894
ORF1ab/nsp12382A382VgCtgTt11B.1.177.50.001242
ORF1ab/nsp12382A382VgCtgTt11B.1.177.60.000977
ORF1ab/nsp12382A382VgCtgTt11B.1.177.600.000218
ORF1ab/nsp12382A382VgCtgTt11B.1.177.70.000165
ORF1ab/nsp12382A382VgCtgTt11B.1.177.730.000566
ORF1ab/nsp12382A382VgCtgTt11B.1.177.830.001481
ORF1ab/nsp12382A382VgCtgTt11B.1.177.870.000728
ORF1ab/nsp12382A382VgCtgTt11B.1.2340.000132
ORF1ab/nsp12382A382VgCtgTt11B.1.2580.000067
ORF1ab/nsp12382A382VgCtgTt11B.1.3110.000275
ORF1ab/nsp12382A382VgCtgTt11B.1.360.000146
ORF1ab/nsp12382A382VgCtgTt11B.1.3630.012987
ORF1ab/nsp12382A382VgCtgTt11B.1.3670.000792
ORF1ab/nsp12382A382VgCtgTt11B.1.3960.000706
ORF1ab/nsp12382A382VgCtgTt11B.1.4360.001029
ORF1ab/nsp12382A382VgCtgTt11B.1.5170.000427
ORF1ab/nsp12382A382VgCtgTt11B.1.5600.00463
ORF1ab/nsp12382A382VgCtgTt11B.1.617.10.000129
ORF1ab/nsp12382A382VgCtgTt11B.1.6200.000946
ORF1ab/nsp12382A382VgCtgTt11B.1.6280.000352
ORF1ab/nsp12382A382VgCtgTt11B.1.6370.000073
ORF1ab/nsp12382A382VgCtgTt11B.110.005128
ORF1ab/nsp12382A382VgCtgTt11B.30.000831
ORF1ab/nsp12382A382VgCtgTt11B.310.003731
ORF1ab/nsp12382A382VgCtgTt11B.6.20.0625
ORF1ab/nsp12382A382VgCtgTt11N.50.001767
ORF1ab/nsp12382A382VgCtgTt11P.1.120.000484
ORF1ab/nsp12382A382VgCtgTt11P.20.000187
ORF1ab/nsp12382A382VgCtgTt11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.