CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 382 & Codon = Act

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12382A382TA4774TnonsynGctAct174017390.99942514584-14586

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12382A382TGctAct17391740All0.000333
ORF1ab/nsp12382A382TGctAct693693B.1.1.4330.987179
ORF1ab/nsp12382A382TGctAct395395AY.1030.002453
ORF1ab/nsp12382A382TGctAct8585B.1.1.70.000076
ORF1ab/nsp12382A382TGctAct7979AY.46.60.005704
ORF1ab/nsp12382A382TGctAct4949B.1.617.20.000185
ORF1ab/nsp12382A382TGctAct4646B.1.5770.031615
ORF1ab/nsp12382A382TGctAct4444AY.40.000068
ORF1ab/nsp12382A382TGctAct4242P.10.000662
ORF1ab/nsp12382A382TGctAct2121B.1.20.000185
ORF1ab/nsp12382A382TGctAct2020AY.440.000122
ORF1ab/nsp12382A382TGctAct2020B.1.1600.000624
ORF1ab/nsp12382A382TGctAct1717AY.250.000102
ORF1ab/nsp12382A382TGctAct1717B.1.5950.004436
ORF1ab/nsp12382A382TGctAct1616B.1.10.00029
ORF1ab/nsp12382A382TGctAct1515B.10.000137
ORF1ab/nsp12382A382TGctAct1313AY.430.000058
ORF1ab/nsp12382A382TGctAct1010AY.30.000099
ORF1ab/nsp12382A382TGctAct77B.1.466.20.002739
ORF1ab/nsp12382A382TGctAct66AY.4.20.00013
ORF1ab/nsp12382A382TGctAct66B.1.4270.000303
ORF1ab/nsp12382A382TGctAct66Q.40.002729
ORF1ab/nsp12382A382TGctAct55AY.4.50.000537
ORF1ab/nsp12382A382TGctAct55AY.50.000103
ORF1ab/nsp12382A382TGctAct55D.20.000375
ORF1ab/nsp12382A382TGctAct44AY.1000.000184
ORF1ab/nsp12382A382TGctAct44AY.1190.000141
ORF1ab/nsp12382A382TGctAct44AY.460.000416
ORF1ab/nsp12382A382TGctAct44B.1.1.3330.004306
ORF1ab/nsp12382A382TGctAct44B.1.1.4860.006309
ORF1ab/nsp12382A382TGctAct44B.1.258.30.0067
ORF1ab/nsp12382A382TGctAct44P.1.10.001271
ORF1ab/nsp12382A382TGctAct33AY.130.000483
ORF1ab/nsp12382A382TGctAct33AY.230.000209
ORF1ab/nsp12382A382TGctAct33AY.540.000286
ORF1ab/nsp12382A382TGctAct33B.1.110.30.002155
ORF1ab/nsp12382A382TGctAct33B.1.3670.002377
ORF1ab/nsp12382A382TGctAct33B.1.6370.000219
ORF1ab/nsp12382A382TGctAct22AY.1020.000053
ORF1ab/nsp12382A382TGctAct22AY.200.000078
ORF1ab/nsp12382A382TGctAct22AY.260.000057
ORF1ab/nsp12382A382TGctAct22AY.4.2.10.000298
ORF1ab/nsp12382A382TGctAct22AY.420.00008
ORF1ab/nsp12382A382TGctAct22AY.450.000243
ORF1ab/nsp12382A382TGctAct22AY.550.001835
ORF1ab/nsp12382A382TGctAct22AY.840.000875
ORF1ab/nsp12382A382TGctAct22AY.920.000575
ORF1ab/nsp12382A382TGctAct22B0.000256
ORF1ab/nsp12382A382TGctAct22B.1.1.2140.000111
ORF1ab/nsp12382A382TGctAct22B.1.160.320.008584
ORF1ab/nsp12382A382TGctAct22B.1.1770.000026
ORF1ab/nsp12382A382TGctAct22B.1.2340.000264
ORF1ab/nsp12382A382TGctAct22B.1.2360.004107
ORF1ab/nsp12382A382TGctAct22B.1.2580.000133
ORF1ab/nsp12382A382TGctAct12B.1.5250.000113
ORF1ab/nsp12382A382TGctAct22C.370.000232
ORF1ab/nsp12382A382TGctAct11AD.20.000219
ORF1ab/nsp12382A382TGctAct11AE.80.000489
ORF1ab/nsp12382A382TGctAct11AY.1200.000037
ORF1ab/nsp12382A382TGctAct11AY.350.000233
ORF1ab/nsp12382A382TGctAct11AY.360.000148
ORF1ab/nsp12382A382TGctAct11AY.390.000025
ORF1ab/nsp12382A382TGctAct11AY.470.000031
ORF1ab/nsp12382A382TGctAct11AY.590.00053
ORF1ab/nsp12382A382TGctAct11AY.660.00107
ORF1ab/nsp12382A382TGctAct11AY.730.000665
ORF1ab/nsp12382A382TGctAct11AY.740.000116
ORF1ab/nsp12382A382TGctAct11AY.750.000056
ORF1ab/nsp12382A382TGctAct11AY.90.000068
ORF1ab/nsp12382A382TGctAct11AY.980.000079
ORF1ab/nsp12382A382TGctAct11AY.990.001049
ORF1ab/nsp12382A382TGctAct11B.1.1.2170.003636
ORF1ab/nsp12382A382TGctAct11B.1.1.2220.000204
ORF1ab/nsp12382A382TGctAct11B.1.1.250.000569
ORF1ab/nsp12382A382TGctAct11B.1.1.390.00051
ORF1ab/nsp12382A382TGctAct11B.1.1.5140.038462
ORF1ab/nsp12382A382TGctAct11B.1.1390.000733
ORF1ab/nsp12382A382TGctAct11B.1.160.280.002924
ORF1ab/nsp12382A382TGctAct11B.1.177.110.001698
ORF1ab/nsp12382A382TGctAct11B.1.177.120.000152
ORF1ab/nsp12382A382TGctAct11B.1.2210.000071
ORF1ab/nsp12382A382TGctAct11B.1.3510.00003
ORF1ab/nsp12382A382TGctAct11B.1.4020.009804
ORF1ab/nsp12382A382TGctAct11B.1.5170.000427
ORF1ab/nsp12382A382TGctAct11B.1.5260.000024
ORF1ab/nsp12382A382TGctAct11B.1.5890.007576
ORF1ab/nsp12382A382TGctAct11B.1.6090.000479
ORF1ab/nsp12382A382TGctAct11B.1.6210.000089
ORF1ab/nsp12382A382TGctAct11B.1.6280.000352
ORF1ab/nsp12382A382TGctAct11B.1.930.000934
ORF1ab/nsp12382A382TGctAct11B.490.05
ORF1ab/nsp12382A382TGctAct11P.1.150.000232

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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