CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 380 | M380I | M4772I | nonsyn | atG | atT | 3201 | 2723 | 0.850672 | 14578-14580 |
ORF1ab/nsp12 | 380 | M380I | M4772I | nonsyn | atG | atA | 3201 | 464 | 0.144955 | 14578-14580 |
ORF1ab/nsp12 | 380 | M380I | M4772I | nonsyn | atG | atC | 3201 | 14 | 0.00437363 | 14578-14580 |
ORF1ab/nsp12 | 380 | M380V | M4772V | nonsyn | Atg | Gtg | 186 | 185 | 0.994624 | 14578-14580 |
ORF1ab/nsp12 | 380 | M380V | M4772V | nonsyn | AtG | GtT | 186 | 1 | 0.00537634 | 14578-14580 |
ORF1ab/nsp12 | 380 | M380del | M4772del | del | ATG | --- | 87 | 87 | 1 | 14578-14580 |
ORF1ab/nsp12 | 380 | M380L | M4772L | nonsyn | Atg | Ttg | 25 | 24 | 0.96 | 14578-14580 |
ORF1ab/nsp12 | 380 | M380L | M4772L | nonsyn | Atg | Ctg | 25 | 1 | 0.04 | 14578-14580 |
ORF1ab/nsp12 | 380 | M380T | M4772T | nonsyn | aTg | aCg | 21 | 20 | 0.952381 | 14578-14580 |
ORF1ab/nsp12 | 380 | M380T | M4772T | nonsyn | aTG | aCA | 21 | 1 | 0.047619 | 14578-14580 |
ORF1ab/nsp12 | 380 | M380del1 | M4772del1 | del | Atg | -tg | 7 | 5 | 0.714286 | 14578-14580 |
ORF1ab/nsp12 | 380 | M380del1 | M4772del1 | del | atG | at- | 7 | 2 | 0.285714 | 14578-14580 |
ORF1ab/nsp12 | 380 | M380S | M4772S | nonsyn | ATG | TCT | 6 | 5 | 0.833333 | 14578-14580 |
ORF1ab/nsp12 | 380 | M380S | M4772S | nonsyn | ATG | TCA | 6 | 1 | 0.166667 | 14578-14580 |
ORF1ab/nsp12 | 380 | M380del2 | M4772del2 | del | aTG | a-- | 5 | 4 | 0.8 | 14578-14580 |
ORF1ab/nsp12 | 380 | M380del2 | M4772del2 | del | ATg | --g | 5 | 1 | 0.2 | 14578-14580 |
ORF1ab/nsp12 | 380 | M380K | M4772K | nonsyn | aTg | aAg | 2 | 2 | 1 | 14578-14580 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2723 | 3201 | All | 0.000521 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 464 | 3201 | All | 0.000089 |
ORF1ab/nsp12 | 380 | M380I | atG | atC | 14 | 3201 | All | 0.000003 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 726 | 965 | AY.4 | 0.00113 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 236 | 965 | AY.4 | 0.000367 |
ORF1ab/nsp12 | 380 | M380I | atG | atC | 3 | 965 | AY.4 | 0.000005 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 613 | 622 | B.1.617.2 | 0.002308 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 9 | 622 | B.1.617.2 | 0.000034 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 185 | 186 | All | 0.000035 |
ORF1ab/nsp12 | 380 | M380V | AtG | GtT | 1 | 186 | All | 0 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 132 | 139 | AY.43 | 0.000585 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 7 | 139 | AY.43 | 0.000031 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 119 | 123 | AY.26 | 0.003369 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 4 | 123 | AY.26 | 0.000113 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 94 | 106 | B.1 | 0.000861 |
ORF1ab/nsp12 | 380 | M380I | atG | atC | 9 | 106 | B.1 | 0.000082 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 3 | 106 | B.1 | 0.000027 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 105 | 105 | AY.102 | 0.002784 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 96 | 96 | B.1.564.1 | 0.15142 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 87 | 87 | All | 0.000017 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 77 | 84 | AY.44 | 0.000469 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 7 | 84 | AY.44 | 0.000043 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 43 | 77 | B.1.1.7 | 0.000038 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 34 | 77 | B.1.1.7 | 0.00003 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 76 | 76 | B.1.177 | 0.001001 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 72 | 72 | AY.42 | 0.002897 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 58 | 59 | AY.103 | 0.00036 |
ORF1ab/nsp12 | 380 | M380I | atG | atC | 1 | 59 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 52 | 52 | B.1.153 | 0.981132 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 46 | 46 | AY.108 | 0.050717 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 26 | 38 | AY.39 | 0.000642 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 12 | 38 | AY.39 | 0.000297 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 32 | 32 | B.1.1.7 | 0.000029 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 26 | 30 | AY.98.1 | 0.001259 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 4 | 30 | AY.98.1 | 0.000194 |
ORF1ab/nsp12 | 380 | M380L | Atg | Ttg | 24 | 25 | All | 0.000005 |
ORF1ab/nsp12 | 380 | M380L | Atg | Ctg | 1 | 25 | All | 0 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 24 | 24 | AY.4 | 0.000037 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 24 | 24 | B.1.177.9 | 0.031957 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 23 | 23 | AY.46 | 0.002394 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 17 | 22 | AY.3 | 0.000169 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 5 | 22 | AY.3 | 0.00005 |
ORF1ab/nsp12 | 380 | M380T | aTg | aCg | 20 | 21 | All | 0.000004 |
ORF1ab/nsp12 | 380 | M380T | aTG | aCA | 1 | 21 | All | 0 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 19 | 19 | AY.111 | 0.00348 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 18 | 19 | AY.25 | 0.000108 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 1 | 19 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 19 | 19 | AY.5.2 | 0.046798 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 19 | 19 | B.1.400 | 0.008151 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 16 | 17 | B.1.1 | 0.00029 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 1 | 17 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 13 | 16 | B.1.2 | 0.000114 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 3 | 16 | B.1.2 | 0.000026 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 14 | 15 | AY.20 | 0.000544 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 1 | 15 | AY.20 | 0.000039 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 13 | 13 | AY.46.5 | 0.002579 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 11 | 11 | AY.3 | 0.000109 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 11 | 11 | AY.9.2 | 0.000404 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 9 | 10 | AY.33 | 0.000601 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 1 | 10 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 10 | 10 | AY.43 | 0.000044 |
ORF1ab/nsp12 | 380 | M380L | Atg | Ttg | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 9 | 9 | AY.39 | 0.000222 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 8 | 8 | AY.120 | 0.000297 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 7 | 8 | AY.23 | 0.000488 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 1 | 8 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 8 | 8 | AY.46.1 | 0.008214 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 8 | 8 | AY.5 | 0.000165 |
ORF1ab/nsp12 | 380 | M380del1 | Atg | -tg | 5 | 7 | All | 0.000001 |
ORF1ab/nsp12 | 380 | M380del1 | atG | at- | 2 | 7 | All | 0 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 7 | 7 | AY.14 | 0.000616 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 4 | 7 | AY.29 | 0.000063 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 3 | 7 | AY.29 | 0.000047 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 7 | 7 | AY.29.1 | 0.001544 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 7 | 7 | AY.93 | 0.001912 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 7 | 7 | AY.98 | 0.000553 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 7 | 7 | B.1.1.301 | 0.008255 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 7 | 7 | B.1.466.2 | 0.002739 |
ORF1ab/nsp12 | 380 | M380S | ATG | TCT | 5 | 6 | All | 0.000001 |
ORF1ab/nsp12 | 380 | M380S | ATG | TCA | 1 | 6 | All | 0 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 6 | 6 | AY.34 | 0.000582 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 6 | 6 | AY.4.1 | 0.004425 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 5 | 6 | AY.47 | 0.000156 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 1 | 6 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 6 | 6 | AY.7 | 0.001176 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 5 | 6 | B.1.258 | 0.000333 |
ORF1ab/nsp12 | 380 | M380I | atG | atC | 1 | 6 | B.1.258 | 0.000067 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp12 | 380 | M380del2 | aTG | a-- | 4 | 5 | All | 0.000001 |
ORF1ab/nsp12 | 380 | M380del2 | ATg | --g | 1 | 5 | All | 0 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 5 | 5 | AY.120.1 | 0.001605 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 5 | 5 | AY.34.1 | 0.00255 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 5 | 5 | AY.46.6 | 0.000361 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 5 | 5 | AY.81 | 0.00996 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 5 | 5 | B.1.1.239 | 0.16129 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 4 | 5 | B.1.1.519 | 0.000159 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 1 | 5 | B.1.1.519 | 0.00004 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 3 | 5 | B.1.177 | 0.00004 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 5 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 5 | 5 | B.1.177.36 | 0.080645 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 5 | 5 | B.1.177.7 | 0.000824 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 5 | 5 | B.1.582 | 0.002453 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 4 | 4 | AY.12 | 0.001264 |
ORF1ab/nsp12 | 380 | M380T | aTg | aCg | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 4 | 4 | AY.92 | 0.001149 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 4 | 4 | AY.95 | 0.003044 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 3 | 4 | B.1.1.7 | 0.000003 |
ORF1ab/nsp12 | 380 | M380del1 | Atg | -tg | 2 | 4 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 380 | M380del1 | atG | at- | 2 | 4 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 380 | M380V | AtG | GtT | 1 | 4 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 4 | 4 | B.1.177.12 | 0.000607 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 3 | 4 | B.1.243 | 0.000209 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 1 | 4 | B.1.243 | 0.00007 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 4 | 4 | B.1.595.2 | 0.16 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp12 | 380 | M380T | aTg | aCg | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp12 | 380 | M380L | Atg | Ttg | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 3 | 3 | AY.62 | 0.001307 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp12 | 380 | M380S | ATG | TCT | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp12 | 380 | M380S | ATG | TCA | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp12 | 380 | M380L | Atg | Ttg | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 3 | 3 | B.1.367 | 0.002377 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 3 | 3 | B.1.402 | 0.029412 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp12 | 380 | M380K | aTg | aAg | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp12 | 380 | M380T | aTg | aCg | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 1 | 2 | AY.37 | 0.000316 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 2 | AY.37 | 0.000316 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | AY.57 | 0.001312 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 1 | 2 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 2 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | AY.8 | 0.001212 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 1 | 2 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 2 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 2 | 2 | B | 0.000256 |
ORF1ab/nsp12 | 380 | M380S | ATG | TCT | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | B.1.1.234 | 0.024096 |
ORF1ab/nsp12 | 380 | M380del2 | aTG | a-- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 380 | M380L | Atg | Ttg | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | B.1.177.53 | 0.004785 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 2 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 1 | 2 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp12 | 380 | M380T | aTg | aCg | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | B.45 | 0.007663 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 380 | M380del2 | aTG | a-- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp12 | 380 | M380K | aTg | aAg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 380 | M380T | aTg | aCg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp12 | 380 | M380T | aTg | aCg | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp12 | 380 | M380T | aTg | aCg | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp12 | 380 | M380T | aTg | aCg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 380 | M380T | aTg | aCg | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp12 | 380 | M380del2 | aTG | a-- | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 380 | M380T | aTg | aCg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp12 | 380 | M380del1 | Atg | -tg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 380 | M380T | aTg | aCg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 380 | M380del1 | Atg | -tg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 380 | M380T | aTg | aCg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 380 | M380L | Atg | Ttg | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp12 | 380 | M380T | aTg | aCg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp12 | 380 | M380T | aTG | aCA | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 380 | M380L | Atg | Ttg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 380 | M380del2 | ATg | --g | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.192 | 0.009259 |
ORF1ab/nsp12 | 380 | M380S | ATG | TCT | 1 | 1 | B.1.195 | 0.005025 |
ORF1ab/nsp12 | 380 | M380L | Atg | Ctg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.289 | 0.00266 |
ORF1ab/nsp12 | 380 | M380L | Atg | Ttg | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.335 | 0.010309 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.437 | 0.020833 |
ORF1ab/nsp12 | 380 | M380K | aTg | aAg | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp12 | 380 | M380L | Atg | Ttg | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp12 | 380 | M380I | atG | atA | 1 | 1 | B.4.5 | 0.011905 |
ORF1ab/nsp12 | 380 | M380I | atG | atT | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp12 | 380 | M380del1 | Atg | -tg | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp12 | 380 | M380V | Atg | Gtg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp12 | 380 | M380L | Atg | Ttg | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp12 | 380 | M380del | ATG | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp12 | 380 | M380L | Atg | Ttg | 1 | 1 | S.1 | 0.00495 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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