CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 380

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12380M380IM4772InonsynatGatT320127230.85067214578-14580
ORF1ab/nsp12380M380IM4772InonsynatGatA32014640.14495514578-14580
ORF1ab/nsp12380M380IM4772InonsynatGatC3201140.0043736314578-14580
ORF1ab/nsp12380M380VM4772VnonsynAtgGtg1861850.99462414578-14580
ORF1ab/nsp12380M380VM4772VnonsynAtGGtT18610.0053763414578-14580
ORF1ab/nsp12380M380delM4772deldelATG---8787114578-14580
ORF1ab/nsp12380M380LM4772LnonsynAtgTtg25240.9614578-14580
ORF1ab/nsp12380M380LM4772LnonsynAtgCtg2510.0414578-14580
ORF1ab/nsp12380M380TM4772TnonsynaTgaCg21200.95238114578-14580
ORF1ab/nsp12380M380TM4772TnonsynaTGaCA2110.04761914578-14580
ORF1ab/nsp12380M380del1M4772del1delAtg-tg750.71428614578-14580
ORF1ab/nsp12380M380del1M4772del1delatGat-720.28571414578-14580
ORF1ab/nsp12380M380SM4772SnonsynATGTCT650.83333314578-14580
ORF1ab/nsp12380M380SM4772SnonsynATGTCA610.16666714578-14580
ORF1ab/nsp12380M380del2M4772del2delaTGa--540.814578-14580
ORF1ab/nsp12380M380del2M4772del2delATg--g510.214578-14580
ORF1ab/nsp12380M380KM4772KnonsynaTgaAg22114578-14580

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12380M380IatGatT27233201All0.000521
ORF1ab/nsp12380M380IatGatA4643201All0.000089
ORF1ab/nsp12380M380IatGatC143201All0.000003
ORF1ab/nsp12380M380IatGatT726965AY.40.00113
ORF1ab/nsp12380M380IatGatA236965AY.40.000367
ORF1ab/nsp12380M380IatGatC3965AY.40.000005
ORF1ab/nsp12380M380IatGatT613622B.1.617.20.002308
ORF1ab/nsp12380M380IatGatA9622B.1.617.20.000034
ORF1ab/nsp12380M380VAtgGtg185186All0.000035
ORF1ab/nsp12380M380VAtGGtT1186All0
ORF1ab/nsp12380M380IatGatT132139AY.430.000585
ORF1ab/nsp12380M380IatGatA7139AY.430.000031
ORF1ab/nsp12380M380IatGatT119123AY.260.003369
ORF1ab/nsp12380M380IatGatA4123AY.260.000113
ORF1ab/nsp12380M380IatGatT94106B.10.000861
ORF1ab/nsp12380M380IatGatC9106B.10.000082
ORF1ab/nsp12380M380IatGatA3106B.10.000027
ORF1ab/nsp12380M380IatGatT105105AY.1020.002784
ORF1ab/nsp12380M380IatGatA9696B.1.564.10.15142
ORF1ab/nsp12380M380delATG---8787All0.000017
ORF1ab/nsp12380M380IatGatT7784AY.440.000469
ORF1ab/nsp12380M380IatGatA784AY.440.000043
ORF1ab/nsp12380M380IatGatA4377B.1.1.70.000038
ORF1ab/nsp12380M380IatGatT3477B.1.1.70.00003
ORF1ab/nsp12380M380VAtgGtg7676B.1.1770.001001
ORF1ab/nsp12380M380IatGatT7272AY.420.002897
ORF1ab/nsp12380M380IatGatT5859AY.1030.00036
ORF1ab/nsp12380M380IatGatC159AY.1030.000006
ORF1ab/nsp12380M380IatGatT5252B.1.1530.981132
ORF1ab/nsp12380M380IatGatT4646AY.1080.050717
ORF1ab/nsp12380M380IatGatT2638AY.390.000642
ORF1ab/nsp12380M380IatGatA1238AY.390.000297
ORF1ab/nsp12380M380delATG---3232B.1.1.70.000029
ORF1ab/nsp12380M380IatGatT2630AY.98.10.001259
ORF1ab/nsp12380M380IatGatA430AY.98.10.000194
ORF1ab/nsp12380M380LAtgTtg2425All0.000005
ORF1ab/nsp12380M380LAtgCtg125All0
ORF1ab/nsp12380M380VAtgGtg2424AY.40.000037
ORF1ab/nsp12380M380IatGatT2424B.1.177.90.031957
ORF1ab/nsp12380M380IatGatT2323AY.460.002394
ORF1ab/nsp12380M380IatGatT1722AY.30.000169
ORF1ab/nsp12380M380IatGatA522AY.30.00005
ORF1ab/nsp12380M380TaTgaCg2021All0.000004
ORF1ab/nsp12380M380TaTGaCA121All0
ORF1ab/nsp12380M380IatGatT1919AY.1110.00348
ORF1ab/nsp12380M380IatGatT1819AY.250.000108
ORF1ab/nsp12380M380IatGatA119AY.250.000006
ORF1ab/nsp12380M380IatGatT1919AY.5.20.046798
ORF1ab/nsp12380M380IatGatT1919B.1.4000.008151
ORF1ab/nsp12380M380IatGatT1617B.1.10.00029
ORF1ab/nsp12380M380IatGatA117B.1.10.000018
ORF1ab/nsp12380M380IatGatT1316B.1.20.000114
ORF1ab/nsp12380M380IatGatA316B.1.20.000026
ORF1ab/nsp12380M380IatGatT1415AY.200.000544
ORF1ab/nsp12380M380IatGatA115AY.200.000039
ORF1ab/nsp12380M380IatGatT1313AY.46.50.002579
ORF1ab/nsp12380M380VAtgGtg1111AY.30.000109
ORF1ab/nsp12380M380IatGatT1111AY.9.20.000404
ORF1ab/nsp12380M380VAtgGtg1010AY.250.00006
ORF1ab/nsp12380M380IatGatT910AY.330.000601
ORF1ab/nsp12380M380IatGatA110AY.330.000067
ORF1ab/nsp12380M380VAtgGtg1010AY.430.000044
ORF1ab/nsp12380M380LAtgTtg1010B.10.000092
ORF1ab/nsp12380M380VAtgGtg99AY.390.000222
ORF1ab/nsp12380M380delATG---99B.10.000082
ORF1ab/nsp12380M380IatGatT88AY.1200.000297
ORF1ab/nsp12380M380IatGatT78AY.230.000488
ORF1ab/nsp12380M380IatGatA18AY.230.00007
ORF1ab/nsp12380M380IatGatT88AY.46.10.008214
ORF1ab/nsp12380M380IatGatT88AY.50.000165
ORF1ab/nsp12380M380del1Atg-tg57All0.000001
ORF1ab/nsp12380M380del1atGat-27All0
ORF1ab/nsp12380M380IatGatT77AY.140.000616
ORF1ab/nsp12380M380IatGatT47AY.290.000063
ORF1ab/nsp12380M380IatGatA37AY.290.000047
ORF1ab/nsp12380M380IatGatT77AY.29.10.001544
ORF1ab/nsp12380M380IatGatT77AY.930.001912
ORF1ab/nsp12380M380IatGatT77AY.980.000553
ORF1ab/nsp12380M380IatGatT77B.1.1.3010.008255
ORF1ab/nsp12380M380IatGatT77B.1.466.20.002739
ORF1ab/nsp12380M380SATGTCT56All0.000001
ORF1ab/nsp12380M380SATGTCA16All0
ORF1ab/nsp12380M380IatGatT66AY.340.000582
ORF1ab/nsp12380M380IatGatA66AY.4.10.004425
ORF1ab/nsp12380M380IatGatT56AY.470.000156
ORF1ab/nsp12380M380IatGatA16AY.470.000031
ORF1ab/nsp12380M380IatGatT66AY.70.001176
ORF1ab/nsp12380M380IatGatT56B.1.2580.000333
ORF1ab/nsp12380M380IatGatC16B.1.2580.000067
ORF1ab/nsp12380M380VAtgGtg66B.1.3510.000178
ORF1ab/nsp12380M380del2aTGa--45All0.000001
ORF1ab/nsp12380M380del2ATg--g15All0
ORF1ab/nsp12380M380IatGatT55AY.1190.000177
ORF1ab/nsp12380M380IatGatT55AY.120.10.001605
ORF1ab/nsp12380M380delATG---55AY.250.00003
ORF1ab/nsp12380M380IatGatT55AY.34.10.00255
ORF1ab/nsp12380M380IatGatT55AY.4.20.000108
ORF1ab/nsp12380M380IatGatT55AY.46.60.000361
ORF1ab/nsp12380M380IatGatT55AY.810.00996
ORF1ab/nsp12380M380IatGatT55B.1.1.2390.16129
ORF1ab/nsp12380M380IatGatT45B.1.1.5190.000159
ORF1ab/nsp12380M380IatGatA15B.1.1.5190.00004
ORF1ab/nsp12380M380IatGatA35B.1.1770.00004
ORF1ab/nsp12380M380IatGatT25B.1.1770.000026
ORF1ab/nsp12380M380IatGatT55B.1.177.360.080645
ORF1ab/nsp12380M380VAtgGtg55B.1.177.70.000824
ORF1ab/nsp12380M380IatGatT55B.1.5820.002453
ORF1ab/nsp12380M380IatGatT44AY.1170.000338
ORF1ab/nsp12380M380IatGatT44AY.120.001264
ORF1ab/nsp12380M380TaTgaCg44AY.40.000006
ORF1ab/nsp12380M380IatGatT44AY.450.000487
ORF1ab/nsp12380M380VAtgGtg44AY.920.001149
ORF1ab/nsp12380M380IatGatT44AY.950.003044
ORF1ab/nsp12380M380VAtgGtg34B.1.1.70.000003
ORF1ab/nsp12380M380del1Atg-tg24B.1.1.70.000002
ORF1ab/nsp12380M380del1atGat-24B.1.1.70.000002
ORF1ab/nsp12380M380VAtGGtT14B.1.1.70.000001
ORF1ab/nsp12380M380IatGatT44B.1.177.120.000607
ORF1ab/nsp12380M380IatGatT34B.1.2430.000209
ORF1ab/nsp12380M380IatGatA14B.1.2430.00007
ORF1ab/nsp12380M380IatGatT44B.1.595.20.16
ORF1ab/nsp12380M380IatGatT44B.1.5960.000349
ORF1ab/nsp12380M380IatGatT33AY.1000.000138
ORF1ab/nsp12380M380TaTgaCg33AY.1030.000019
ORF1ab/nsp12380M380IatGatT33AY.1100.000338
ORF1ab/nsp12380M380IatGatT33AY.130.000483
ORF1ab/nsp12380M380VAtgGtg33AY.3.10.000256
ORF1ab/nsp12380M380VAtgGtg33AY.39.10.000119
ORF1ab/nsp12380M380delATG---33AY.4.50.000322
ORF1ab/nsp12380M380IatGatT33AY.4.50.000322
ORF1ab/nsp12380M380delATG---33AY.430.000013
ORF1ab/nsp12380M380LAtgTtg33AY.440.000018
ORF1ab/nsp12380M380IatGatT33AY.590.001589
ORF1ab/nsp12380M380IatGatT33AY.610.000314
ORF1ab/nsp12380M380IatGatT33AY.620.001307
ORF1ab/nsp12380M380VAtgGtg33AY.98.10.000145
ORF1ab/nsp12380M380VAtgGtg33B.10.000027
ORF1ab/nsp12380M380SATGTCT23B.10.000018
ORF1ab/nsp12380M380SATGTCA13B.10.000009
ORF1ab/nsp12380M380LAtgTtg33B.1.10.000054
ORF1ab/nsp12380M380delATG---33B.1.10.000054
ORF1ab/nsp12380M380IatGatT33B.1.1.2160.002671
ORF1ab/nsp12380M380IatGatT33B.1.1.4340.001046
ORF1ab/nsp12380M380IatGatT33B.1.1600.000094
ORF1ab/nsp12380M380delATG---33B.1.1770.00004
ORF1ab/nsp12380M380delATG---33B.1.3670.002377
ORF1ab/nsp12380M380IatGatT33B.1.4020.029412
ORF1ab/nsp12380M380VAtgGtg33B.1.617.20.000011
ORF1ab/nsp12380M380IatGatT33D.20.000225
ORF1ab/nsp12380M380KaTgaAg22All0
ORF1ab/nsp12380M380delATG---22AY.1030.000012
ORF1ab/nsp12380M380IatGatT22AY.1050.001286
ORF1ab/nsp12380M380IatGatT22AY.1060.00067
ORF1ab/nsp12380M380IatGatT22AY.1210.000271
ORF1ab/nsp12380M380IatGatT22AY.160.000759
ORF1ab/nsp12380M380TaTgaCg22AY.290.000032
ORF1ab/nsp12380M380IatGatT22AY.350.000466
ORF1ab/nsp12380M380IatGatA12AY.370.000316
ORF1ab/nsp12380M380IatGatT12AY.370.000316
ORF1ab/nsp12380M380IatGatT22AY.380.000999
ORF1ab/nsp12380M380IatGatT22AY.39.10.000079
ORF1ab/nsp12380M380VAtgGtg22AY.440.000012
ORF1ab/nsp12380M380VAtgGtg22AY.50.000041
ORF1ab/nsp12380M380IatGatT22AY.550.001835
ORF1ab/nsp12380M380IatGatT22AY.570.001312
ORF1ab/nsp12380M380IatGatA12AY.60.000041
ORF1ab/nsp12380M380IatGatT12AY.60.000041
ORF1ab/nsp12380M380IatGatT22AY.740.000231
ORF1ab/nsp12380M380IatGatT22AY.80.001212
ORF1ab/nsp12380M380IatGatA12AY.990.001049
ORF1ab/nsp12380M380IatGatT12AY.990.001049
ORF1ab/nsp12380M380IatGatA22B0.000256
ORF1ab/nsp12380M380SATGTCT22B.1.10.000036
ORF1ab/nsp12380M380IatGatT22B.1.1.2340.024096
ORF1ab/nsp12380M380del2aTGa--22B.1.1.70.000002
ORF1ab/nsp12380M380LAtgTtg22B.1.1.70.000002
ORF1ab/nsp12380M380IatGatT22B.1.177.530.004785
ORF1ab/nsp12380M380IatGatT22B.1.177.600.000437
ORF1ab/nsp12380M380IatGatT22B.1.177.810.000379
ORF1ab/nsp12380M380IatGatT22B.1.2210.000142
ORF1ab/nsp12380M380IatGatT22B.1.2400.000431
ORF1ab/nsp12380M380IatGatT22B.1.3110.000549
ORF1ab/nsp12380M380IatGatT22B.1.3510.000059
ORF1ab/nsp12380M380IatGatT22B.1.3750.001639
ORF1ab/nsp12380M380IatGatT22B.1.3960.001411
ORF1ab/nsp12380M380IatGatA22B.1.4290.000047
ORF1ab/nsp12380M380IatGatT12B.1.5250.000113
ORF1ab/nsp12380M380IatGatA12B.1.5250.000113
ORF1ab/nsp12380M380delATG---22B.1.617.20.000008
ORF1ab/nsp12380M380TaTgaCg22B.1.617.20.000008
ORF1ab/nsp12380M380IatGatT22B.1.6370.000146
ORF1ab/nsp12380M380IatGatT22B.400.000729
ORF1ab/nsp12380M380IatGatT22B.450.007663
ORF1ab/nsp12380M380IatGatT22N.50.003534
ORF1ab/nsp12380M380IatGatT22P.10.000032
ORF1ab/nsp12380M380IatGatT22R.10.00018
ORF1ab/nsp12380M380IatGatT110.055556
ORF1ab/nsp12380M380del2aTGa--11A0.000387
ORF1ab/nsp12380M380IatGatT11A.10.000282
ORF1ab/nsp12380M380IatGatT11A.2.50.000499
ORF1ab/nsp12380M380IatGatT11AY.10.000396
ORF1ab/nsp12380M380IatGatT11AY.1010.00049
ORF1ab/nsp12380M380IatGatA11AY.1040.001984
ORF1ab/nsp12380M380IatGatT11AY.110.001339
ORF1ab/nsp12380M380delATG---11AY.1110.000183
ORF1ab/nsp12380M380VAtgGtg11AY.1180.000063
ORF1ab/nsp12380M380IatGatT11AY.16.10.00047
ORF1ab/nsp12380M380IatGatT11AY.190.00114
ORF1ab/nsp12380M380IatGatT11AY.20.000356
ORF1ab/nsp12380M380KaTgaAg11AY.230.00007
ORF1ab/nsp12380M380VAtgGtg11AY.260.000028
ORF1ab/nsp12380M380IatGatT11AY.280.00189
ORF1ab/nsp12380M380VAtgGtg11AY.290.000016
ORF1ab/nsp12380M380TaTgaCg11AY.30.00001
ORF1ab/nsp12380M380IatGatT11AY.3.10.000085
ORF1ab/nsp12380M380TaTgaCg11AY.3.10.000085
ORF1ab/nsp12380M380VAtgGtg11AY.340.000097
ORF1ab/nsp12380M380TaTgaCg11AY.360.000148
ORF1ab/nsp12380M380delATG---11AY.40.000002
ORF1ab/nsp12380M380IatGatT11AY.4.2.10.000149
ORF1ab/nsp12380M380IatGatT11AY.4.40.000409
ORF1ab/nsp12380M380TaTgaCg11AY.430.000004
ORF1ab/nsp12380M380delATG---11AY.450.000122
ORF1ab/nsp12380M380TaTgaCg11AY.450.000122
ORF1ab/nsp12380M380VAtgGtg11AY.460.000104
ORF1ab/nsp12380M380IatGatT11AY.46.20.000635
ORF1ab/nsp12380M380delATG---11AY.46.20.000635
ORF1ab/nsp12380M380del2aTGa--11AY.470.000031
ORF1ab/nsp12380M380TaTgaCg11AY.50.000021
ORF1ab/nsp12380M380delATG---11AY.5.30.000337
ORF1ab/nsp12380M380IatGatT11AY.5.40.000277
ORF1ab/nsp12380M380IatGatT11AY.540.000095
ORF1ab/nsp12380M380delATG---11AY.650.000533
ORF1ab/nsp12380M380delATG---11AY.660.00107
ORF1ab/nsp12380M380IatGatT11AY.700.000209
ORF1ab/nsp12380M380VAtgGtg11AY.720.001361
ORF1ab/nsp12380M380IatGatA11AY.75.10.00018
ORF1ab/nsp12380M380delATG---11AY.770.001127
ORF1ab/nsp12380M380VAtgGtg11AY.810.001992
ORF1ab/nsp12380M380IatGatT11AY.820.001357
ORF1ab/nsp12380M380IatGatT11AY.850.000427
ORF1ab/nsp12380M380IatGatT11AY.880.000884
ORF1ab/nsp12380M380delATG---11AY.90.000068
ORF1ab/nsp12380M380IatGatT11AY.9.10.000084
ORF1ab/nsp12380M380delATG---11AY.9.20.000037
ORF1ab/nsp12380M380IatGatT11AY.910.00073
ORF1ab/nsp12380M380IatGatT11AY.920.000287
ORF1ab/nsp12380M380IatGatT11AY.960.002075
ORF1ab/nsp12380M380delATG---11AY.990.001049
ORF1ab/nsp12380M380delATG---11AY.99.10.001553
ORF1ab/nsp12380M380IatGatT11AY.99.20.000092
ORF1ab/nsp12380M380IatGatT11AZ.10.000867
ORF1ab/nsp12380M380del1Atg-tg11B.10.000009
ORF1ab/nsp12380M380TaTgaCg11B.10.000009
ORF1ab/nsp12380M380del1Atg-tg11B.1.10.000018
ORF1ab/nsp12380M380TaTgaCg11B.1.10.000018
ORF1ab/nsp12380M380IatGatT11B.1.1.2140.000055
ORF1ab/nsp12380M380IatGatT11B.1.1.2220.000204
ORF1ab/nsp12380M380IatGatT11B.1.1.2690.001353
ORF1ab/nsp12380M380IatGatT11B.1.1.3060.000438
ORF1ab/nsp12380M380LAtgTtg11B.1.1.3060.000438
ORF1ab/nsp12380M380IatGatT11B.1.1.3110.000358
ORF1ab/nsp12380M380IatGatT11B.1.1.330.000421
ORF1ab/nsp12380M380IatGatT11B.1.1.3480.000796
ORF1ab/nsp12380M380IatGatT11B.1.1.4110.014706
ORF1ab/nsp12380M380TaTgaCg11B.1.1.70.000001
ORF1ab/nsp12380M380delATG---11B.1.1.700.000341
ORF1ab/nsp12380M380IatGatT11B.1.1110.001175
ORF1ab/nsp12380M380IatGatT11B.1.130.002375
ORF1ab/nsp12380M380TaTGaCA11B.1.1600.000031
ORF1ab/nsp12380M380delATG---11B.1.1600.000031
ORF1ab/nsp12380M380LAtgTtg11B.1.1770.000013
ORF1ab/nsp12380M380del2ATg--g11B.1.1770.000013
ORF1ab/nsp12380M380delATG---11B.1.177.540.000606
ORF1ab/nsp12380M380IatGatT11B.1.177.570.000281
ORF1ab/nsp12380M380delATG---11B.1.177.830.001481
ORF1ab/nsp12380M380IatGatA11B.1.177.860.000183
ORF1ab/nsp12380M380IatGatT11B.1.1920.009259
ORF1ab/nsp12380M380SATGTCT11B.1.1950.005025
ORF1ab/nsp12380M380LAtgCtg11B.1.20.000009
ORF1ab/nsp12380M380IatGatT11B.1.2100.002132
ORF1ab/nsp12380M380delATG---11B.1.2210.000071
ORF1ab/nsp12380M380IatGatT11B.1.2410.000812
ORF1ab/nsp12380M380delATG---11B.1.2580.000067
ORF1ab/nsp12380M380IatGatT11B.1.2650.001271
ORF1ab/nsp12380M380IatGatT11B.1.2890.00266
ORF1ab/nsp12380M380LAtgTtg11B.1.3260.007576
ORF1ab/nsp12380M380IatGatT11B.1.3350.010309
ORF1ab/nsp12380M380IatGatT11B.1.3490.000715
ORF1ab/nsp12380M380IatGatT11B.1.36.170.000494
ORF1ab/nsp12380M380IatGatA11B.1.3670.000792
ORF1ab/nsp12380M380IatGatT11B.1.4160.001269
ORF1ab/nsp12380M380IatGatA11B.1.4270.00005
ORF1ab/nsp12380M380IatGatT11B.1.4370.020833
ORF1ab/nsp12380M380KaTgaAg11B.1.4620.007246
ORF1ab/nsp12380M380LAtgTtg11B.1.5170.000427
ORF1ab/nsp12380M380delATG---11B.1.5250.000113
ORF1ab/nsp12380M380IatGatT11B.1.5510.00129
ORF1ab/nsp12380M380delATG---11B.1.5610.000397
ORF1ab/nsp12380M380IatGatA11B.1.5640.000426
ORF1ab/nsp12380M380IatGatT11B.1.5760.000907
ORF1ab/nsp12380M380IatGatT11B.1.5800.004065
ORF1ab/nsp12380M380IatGatT11B.1.6210.000089
ORF1ab/nsp12380M380IatGatT11B.1.6270.00202
ORF1ab/nsp12380M380IatGatA11B.4.50.011905
ORF1ab/nsp12380M380IatGatT11B.610.005747
ORF1ab/nsp12380M380del1Atg-tg11C.360.000911
ORF1ab/nsp12380M380VAtgGtg11D.20.000075
ORF1ab/nsp12380M380delATG---11P.1.10.000318
ORF1ab/nsp12380M380LAtgTtg11P.20.000187
ORF1ab/nsp12380M380delATG---11Q.20.000613
ORF1ab/nsp12380M380LAtgTtg11S.10.00495