CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 38

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1238Y38YY4430YsyntaCtaT40694069113552-13554
ORF1ab/nsp1238Y38HY4430HnonsynTacCac5858113552-13554
ORF1ab/nsp1238Y38delY4430deldelTAC---4545113552-13554
ORF1ab/nsp1238Y38XY4430XnonsyntaCtaA540.813552-13554
ORF1ab/nsp1238Y38XY4430XnonsyntACtGA510.213552-13554
ORF1ab/nsp1238Y38CY4430CnonsyntActGc44113552-13554
ORF1ab/nsp1238Y38FY4430FnonsyntActTc430.7513552-13554
ORF1ab/nsp1238Y38NY4430NnonsynTacAac430.7513552-13554
ORF1ab/nsp1238Y38del1Y4430del1deltAct-c420.513552-13554
ORF1ab/nsp1238Y38NY4430NnonsynTaCAaT410.2513552-13554
ORF1ab/nsp1238Y38del1Y4430del1delTac-ac410.2513552-13554
ORF1ab/nsp1238Y38del1Y4430del1deltaCta-410.2513552-13554
ORF1ab/nsp1238Y38FY4430FnonsyntACtTT410.2513552-13554
ORF1ab/nsp1238Y38DY4430DnonsynTacGac33113552-13554
ORF1ab/nsp1238Y38VY4430VnonsynTACGTA11113552-13554
ORF1ab/nsp1238Y38KY4430KnonsynTaCAaA11113552-13554

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1238Y38YtaCtaT40694069All0.000778
ORF1ab/nsp1238Y38YtaCtaT11991199B.1.10.021751
ORF1ab/nsp1238Y38YtaCtaT825825B.1.1.70.000739
ORF1ab/nsp1238Y38YtaCtaT462462AY.40.000719
ORF1ab/nsp1238Y38YtaCtaT185185AY.440.001126
ORF1ab/nsp1238Y38YtaCtaT8181AY.50.001673
ORF1ab/nsp1238Y38YtaCtaT6666B.1.617.20.000249
ORF1ab/nsp1238Y38YtaCtaT6666P.10.00104
ORF1ab/nsp1238Y38YtaCtaT6565AY.250.000391
ORF1ab/nsp1238Y38YtaCtaT6060B.1.1.3361
ORF1ab/nsp1238Y38HTacCac5858All0.000011
ORF1ab/nsp1238Y38YtaCtaT5858B.1.1.3381
ORF1ab/nsp1238Y38YtaCtaT5353B.1.1.5220.913793
ORF1ab/nsp1238Y38delTAC---4545All0.000009
ORF1ab/nsp1238Y38YtaCtaT4343P.1.140.002055
ORF1ab/nsp1238Y38YtaCtaT4141B.10.000376
ORF1ab/nsp1238Y38YtaCtaT4040B.1.20.000352
ORF1ab/nsp1238Y38YtaCtaT3939AY.430.000173
ORF1ab/nsp1238Y38HTacCac3939B.1.10.000707
ORF1ab/nsp1238Y38YtaCtaT3939B.1.2210.00277
ORF1ab/nsp1238Y38YtaCtaT3636AY.620.015686
ORF1ab/nsp1238Y38YtaCtaT3535B.1.1770.000461
ORF1ab/nsp1238Y38YtaCtaT3333B.1.36.160.047009
ORF1ab/nsp1238Y38YtaCtaT2929AY.90.00196
ORF1ab/nsp1238Y38YtaCtaT2626AY.750.001457
ORF1ab/nsp1238Y38YtaCtaT2525AY.1030.000155
ORF1ab/nsp1238Y38YtaCtaT2525B.1.1.5190.000993
ORF1ab/nsp1238Y38YtaCtaT2525B.1.4290.000588
ORF1ab/nsp1238Y38YtaCtaT1818B.1.1.10.00588
ORF1ab/nsp1238Y38YtaCtaT1818B.1.2580.001198
ORF1ab/nsp1238Y38YtaCtaT1818B.1.3110.004942
ORF1ab/nsp1238Y38YtaCtaT1717AY.1020.000451
ORF1ab/nsp1238Y38YtaCtaT1717B.1.1.3190.298246
ORF1ab/nsp1238Y38YtaCtaT1616Y.10.205128
ORF1ab/nsp1238Y38YtaCtaT1515B.1.177.860.002752
ORF1ab/nsp1238Y38delTAC---1414B.1.1.70.000013
ORF1ab/nsp1238Y38YtaCtaT1414B.1.110.30.010057
ORF1ab/nsp1238Y38YtaCtaT1313B.1.3510.000386
ORF1ab/nsp1238Y38YtaCtaT1010AY.30.000099
ORF1ab/nsp1238Y38YtaCtaT99B.1.1.2220.001836
ORF1ab/nsp1238Y38YtaCtaT99B.1.1.2690.012179
ORF1ab/nsp1238Y38YtaCtaT88AY.98.10.000387
ORF1ab/nsp1238Y38YtaCtaT88B.1.1.2240.114286
ORF1ab/nsp1238Y38YtaCtaT88B.1.1.4090.022663
ORF1ab/nsp1238Y38YtaCtaT77AY.200.000272
ORF1ab/nsp1238Y38YtaCtaT77AY.4.20.000152
ORF1ab/nsp1238Y38YtaCtaT77B.1.1.4470.25
ORF1ab/nsp1238Y38YtaCtaT77B.1.5260.000165
ORF1ab/nsp1238Y38YtaCtaT66AY.340.000582
ORF1ab/nsp1238Y38YtaCtaT66AY.390.000148
ORF1ab/nsp1238Y38YtaCtaT66B.1.1.3050.023166
ORF1ab/nsp1238Y38YtaCtaT66B.1.177.70.000989
ORF1ab/nsp1238Y38XtaCtaA45All0.000001
ORF1ab/nsp1238Y38XtACtGA15All0
ORF1ab/nsp1238Y38YtaCtaT55AY.20.001781
ORF1ab/nsp1238Y38YtaCtaT55AY.46.60.000361
ORF1ab/nsp1238Y38YtaCtaT55B.1.1.100.005574
ORF1ab/nsp1238Y38YtaCtaT55B.1.1.1940.024752
ORF1ab/nsp1238Y38YtaCtaT55B.1.5960.000436
ORF1ab/nsp1238Y38YtaCtaT55B.1.6210.000443
ORF1ab/nsp1238Y38YtaCtaT55P.1.70.001596
ORF1ab/nsp1238Y38CtActGc44All0.000001
ORF1ab/nsp1238Y38FtActTc34All0.000001
ORF1ab/nsp1238Y38NTacAac34All0.000001
ORF1ab/nsp1238Y38del1tAct-c24All0
ORF1ab/nsp1238Y38FtACtTT14All0
ORF1ab/nsp1238Y38NTaCAaT14All0
ORF1ab/nsp1238Y38del1Tac-ac14All0
ORF1ab/nsp1238Y38del1taCta-14All0
ORF1ab/nsp1238Y38YtaCtaT44AY.1200.000149
ORF1ab/nsp1238Y38YtaCtaT44AY.290.000063
ORF1ab/nsp1238Y38YtaCtaT44AY.3.10.000341
ORF1ab/nsp1238Y38YtaCtaT44AY.610.000419
ORF1ab/nsp1238Y38YtaCtaT44AY.9.20.000147
ORF1ab/nsp1238Y38YtaCtaT44B.1.1.2770.003035
ORF1ab/nsp1238Y38YtaCtaT44B.1.177.770.002905
ORF1ab/nsp1238Y38YtaCtaT44B.1.360.000584
ORF1ab/nsp1238Y38YtaCtaT44B.1.4700.005618
ORF1ab/nsp1238Y38DTacGac33All0.000001
ORF1ab/nsp1238Y38YtaCtaT33AY.1000.000138
ORF1ab/nsp1238Y38YtaCtaT33AY.230.000209
ORF1ab/nsp1238Y38YtaCtaT33AY.330.0002
ORF1ab/nsp1238Y38YtaCtaT33AY.39.10.000119
ORF1ab/nsp1238Y38delTAC---33AY.430.000013
ORF1ab/nsp1238Y38YtaCtaT33AY.540.000286
ORF1ab/nsp1238Y38YtaCtaT33AY.710.001425
ORF1ab/nsp1238Y38YtaCtaT33AY.980.000237
ORF1ab/nsp1238Y38YtaCtaT33B.1.1.4160.002715
ORF1ab/nsp1238Y38YtaCtaT33B.1.1.4300.125
ORF1ab/nsp1238Y38HTacCac33B.1.1.70.000003
ORF1ab/nsp1238Y38YtaCtaT33B.1.2430.000209
ORF1ab/nsp1238Y38YtaCtaT33B.1.2790.001541
ORF1ab/nsp1238Y38HTacCac33B.1.3510.000089
ORF1ab/nsp1238Y38YtaCtaT33B.1.5820.001472
ORF1ab/nsp1238Y38YtaCtaT33B.1.621.10.001517
ORF1ab/nsp1238Y38YtaCtaT33Q.30.000435
ORF1ab/nsp1238Y38YtaCtaT22A.280.005291
ORF1ab/nsp1238Y38YtaCtaT22AD.20.000438
ORF1ab/nsp1238Y38YtaCtaT22AE.80.000978
ORF1ab/nsp1238Y38YtaCtaT22AY.1050.001286
ORF1ab/nsp1238Y38YtaCtaT22AY.1190.000071
ORF1ab/nsp1238Y38YtaCtaT22AY.130.000322
ORF1ab/nsp1238Y38YtaCtaT22AY.260.000057
ORF1ab/nsp1238Y38delTAC---22AY.40.000003
ORF1ab/nsp1238Y38delTAC---22AY.4.50.000215
ORF1ab/nsp1238Y38YtaCtaT22AY.420.00008
ORF1ab/nsp1238Y38YtaCtaT22AY.460.000208
ORF1ab/nsp1238Y38YtaCtaT22AY.60.000082
ORF1ab/nsp1238Y38CtActGc22AY.610.00021
ORF1ab/nsp1238Y38YtaCtaT22AY.630.000774
ORF1ab/nsp1238Y38YtaCtaT22AY.7.20.001119
ORF1ab/nsp1238Y38YtaCtaT22AY.870.001665
ORF1ab/nsp1238Y38delTAC---22AY.990.002099
ORF1ab/nsp1238Y38YtaCtaT22AY.99.20.000184
ORF1ab/nsp1238Y38delTAC---22B.1.10.000036
ORF1ab/nsp1238Y38YtaCtaT22B.1.1.1980.002937
ORF1ab/nsp1238Y38YtaCtaT22B.1.1.2140.000111
ORF1ab/nsp1238Y38YtaCtaT22B.1.1.2160.001781
ORF1ab/nsp1238Y38YtaCtaT22B.1.1.2540.022472
ORF1ab/nsp1238Y38YtaCtaT22B.1.1.2980.001724
ORF1ab/nsp1238Y38YtaCtaT22B.1.1.3060.000877
ORF1ab/nsp1238Y38YtaCtaT22B.1.1.3700.025316
ORF1ab/nsp1238Y38YtaCtaT22B.1.1.3850.008929
ORF1ab/nsp1238Y38YtaCtaT22B.1.1.4190.014815
ORF1ab/nsp1238Y38YtaCtaT22B.1.1.80.007168
ORF1ab/nsp1238Y38YtaCtaT22B.1.1600.000062
ORF1ab/nsp1238Y38YtaCtaT22B.1.160.140.004237
ORF1ab/nsp1238Y38del1tAct-c22B.1.1770.000026
ORF1ab/nsp1238Y38YtaCtaT22B.1.177.440.001038
ORF1ab/nsp1238Y38YtaCtaT22B.1.177.600.000437
ORF1ab/nsp1238Y38YtaCtaT22B.1.177.730.001133
ORF1ab/nsp1238Y38YtaCtaT22B.1.177.810.000379
ORF1ab/nsp1238Y38HTacCac22B.1.20.000018
ORF1ab/nsp1238Y38YtaCtaT22B.1.4990.002101
ORF1ab/nsp1238Y38YtaCtaT22B.1.5170.000854
ORF1ab/nsp1238Y38YtaCtaT22B.1.5240.002813
ORF1ab/nsp1238Y38YtaCtaT22B.1.5610.000794
ORF1ab/nsp1238Y38YtaCtaT22B.1.6250.004706
ORF1ab/nsp1238Y38YtaCtaT22C.370.000232
ORF1ab/nsp1238Y38delTAC---22P.10.000032
ORF1ab/nsp1238Y38delTAC---22P.1.150.000465
ORF1ab/nsp1238Y38YtaCtaT22R.10.00018
ORF1ab/nsp1238Y38NTacAac11A.2.20.001689
ORF1ab/nsp1238Y38HTacCac11A.23.10.000704
ORF1ab/nsp1238Y38KTaCAaA11All0
ORF1ab/nsp1238Y38VTACGTA11All0
ORF1ab/nsp1238Y38YtaCtaT11AU.20.002421
ORF1ab/nsp1238Y38delTAC---11AY.1000.000046
ORF1ab/nsp1238Y38YtaCtaT11AY.1070.000466
ORF1ab/nsp1238Y38YtaCtaT11AY.1080.001103
ORF1ab/nsp1238Y38YtaCtaT11AY.1100.000113
ORF1ab/nsp1238Y38YtaCtaT11AY.116.10.000311
ORF1ab/nsp1238Y38delTAC---11AY.1190.000035
ORF1ab/nsp1238Y38YtaCtaT11AY.120.000316
ORF1ab/nsp1238Y38delTAC---11AY.1200.000037
ORF1ab/nsp1238Y38YtaCtaT11AY.140.000088
ORF1ab/nsp1238Y38HTacCac11AY.140.000088
ORF1ab/nsp1238Y38YtaCtaT11AY.16.10.00047
ORF1ab/nsp1238Y38YtaCtaT11AY.240.000431
ORF1ab/nsp1238Y38HTacCac11AY.240.000431
ORF1ab/nsp1238Y38delTAC---11AY.250.000006
ORF1ab/nsp1238Y38HTacCac11AY.250.000006
ORF1ab/nsp1238Y38HTacCac11AY.30.00001
ORF1ab/nsp1238Y38CtActGc11AY.30.00001
ORF1ab/nsp1238Y38FtActTc11AY.330.000067
ORF1ab/nsp1238Y38NTacAac11AY.40.000002
ORF1ab/nsp1238Y38HTacCac11AY.40.000002
ORF1ab/nsp1238Y38YtaCtaT11AY.4.2.10.000149
ORF1ab/nsp1238Y38YtaCtaT11AY.450.000122
ORF1ab/nsp1238Y38YtaCtaT11AY.46.20.000635
ORF1ab/nsp1238Y38YtaCtaT11AY.46.50.000198
ORF1ab/nsp1238Y38YtaCtaT11AY.470.000031
ORF1ab/nsp1238Y38YtaCtaT11AY.510.000909
ORF1ab/nsp1238Y38YtaCtaT11AY.590.00053
ORF1ab/nsp1238Y38delTAC---11AY.60.000041
ORF1ab/nsp1238Y38delTAC---11AY.660.00107
ORF1ab/nsp1238Y38YtaCtaT11AY.670.000464
ORF1ab/nsp1238Y38YtaCtaT11AY.680.000274
ORF1ab/nsp1238Y38YtaCtaT11AY.7.10.000113
ORF1ab/nsp1238Y38YtaCtaT11AY.840.000437
ORF1ab/nsp1238Y38FtACtTT11AY.9.20.000037
ORF1ab/nsp1238Y38HTacCac11AY.9.20.000037
ORF1ab/nsp1238Y38YtaCtaT11AY.960.002075
ORF1ab/nsp1238Y38XtACtGA11AY.98.10.000048
ORF1ab/nsp1238Y38YtaCtaT11AZ.20.000821
ORF1ab/nsp1238Y38YtaCtaT11B0.000128
ORF1ab/nsp1238Y38HTacCac11B0.000128
ORF1ab/nsp1238Y38del1taCta-11B.10.000009
ORF1ab/nsp1238Y38FtActTc11B.10.000009
ORF1ab/nsp1238Y38DTacGac11B.1.10.000018
ORF1ab/nsp1238Y38XtaCtaA11B.1.1.10.000327
ORF1ab/nsp1238Y38delTAC---11B.1.1.10.000327
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.1220.045455
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.1340.011364
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.1370.0125
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.1450.037037
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.1480.008772
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.1610.003534
ORF1ab/nsp1238Y38HTacCac11B.1.1.1740.003378
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.1860.003436
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.2070.001182
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.2440.015385
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.2790.001121
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.2990.012195
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.3150.008475
ORF1ab/nsp1238Y38delTAC---11B.1.1.3480.000796
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.3480.000796
ORF1ab/nsp1238Y38delTAC---11B.1.1.370.000193
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.3880.045455
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.390.00051
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.3970.002252
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.3980.003226
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.4070.041667
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.4100.037037
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.4170.002703
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.4220.045455
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.4620.008621
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.500.000679
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.540.003021
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.560.017857
ORF1ab/nsp1238Y38XtaCtaA11B.1.1.70.000001
ORF1ab/nsp1238Y38delTAC---11B.1.1.700.000341
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.700.000341
ORF1ab/nsp1238Y38YtaCtaT11B.1.1.890.006061
ORF1ab/nsp1238Y38YtaCtaT11B.1.1390.000733
ORF1ab/nsp1238Y38YtaCtaT11B.1.160.180.007299
ORF1ab/nsp1238Y38HTacCac11B.1.1770.000013
ORF1ab/nsp1238Y38YtaCtaT11B.1.177.210.000076
ORF1ab/nsp1238Y38HTacCac11B.1.177.210.000076
ORF1ab/nsp1238Y38YtaCtaT11B.1.177.350.000691
ORF1ab/nsp1238Y38YtaCtaT11B.1.177.520.001757
ORF1ab/nsp1238Y38DTacGac11B.1.177.70.000165
ORF1ab/nsp1238Y38YtaCtaT11B.1.1820.007246
ORF1ab/nsp1238Y38YtaCtaT11B.1.1890.004292
ORF1ab/nsp1238Y38NTaCAaT11B.1.20.000009
ORF1ab/nsp1238Y38delTAC---11B.1.20.000009
ORF1ab/nsp1238Y38KTaCAaA11B.1.20.000009
ORF1ab/nsp1238Y38YtaCtaT11B.1.2030.0625
ORF1ab/nsp1238Y38YtaCtaT11B.1.2340.000132
ORF1ab/nsp1238Y38YtaCtaT11B.1.2400.000216
ORF1ab/nsp1238Y38YtaCtaT11B.1.3440.008197
ORF1ab/nsp1238Y38YtaCtaT11B.1.3560.001727
ORF1ab/nsp1238Y38XtaCtaA11B.1.360.000146
ORF1ab/nsp1238Y38XtaCtaA11B.1.36.290.000517
ORF1ab/nsp1238Y38YtaCtaT11B.1.3960.000706
ORF1ab/nsp1238Y38DTacGac11B.1.4150.014286
ORF1ab/nsp1238Y38CtActGc11B.1.4290.000024
ORF1ab/nsp1238Y38YtaCtaT11B.1.4560.003268
ORF1ab/nsp1238Y38NTacAac11B.1.4620.007246
ORF1ab/nsp1238Y38delTAC---11B.1.5250.000113
ORF1ab/nsp1238Y38VTACGTA11B.1.5250.000113
ORF1ab/nsp1238Y38YtaCtaT11B.1.5510.00129
ORF1ab/nsp1238Y38YtaCtaT11B.1.5870.001898
ORF1ab/nsp1238Y38YtaCtaT11B.1.617.10.000129
ORF1ab/nsp1238Y38del1Tac-ac11B.1.617.20.000004
ORF1ab/nsp1238Y38delTAC---11B.1.617.20.000004
ORF1ab/nsp1238Y38YtaCtaT11B.1.6370.000073
ORF1ab/nsp1238Y38delTAC---11C.170.055556
ORF1ab/nsp1238Y38delTAC---11C.370.000116
ORF1ab/nsp1238Y38FtActTc11D.20.000075
ORF1ab/nsp1238Y38YtaCtaT11P.1.10.000318
ORF1ab/nsp1238Y38YtaCtaT11P.1.100.000269
ORF1ab/nsp1238Y38YtaCtaT11P.1.120.000484
ORF1ab/nsp1238Y38YtaCtaT11P.1.130.000898
ORF1ab/nsp1238Y38YtaCtaT11P.1.60.001946
ORF1ab/nsp1238Y38delTAC---11P.20.000187
ORF1ab/nsp1238Y38YtaCtaT11P.20.000187
ORF1ab/nsp1238Y38YtaCtaT11Q.10.000126
ORF1ab/nsp1238Y38YtaCtaT11Q.70.001111