CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 377 | D377D | D4769D | syn | gaC | gaT | 3745 | 3745 | 1 | 14569-14571 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 3745 | 3745 | All | 0.000716 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 576 | 576 | AY.4 | 0.000896 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 570 | 570 | B.1.1.7 | 0.00051 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 339 | 339 | B.1.526 | 0.007968 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 199 | 199 | B.1.617.2 | 0.000749 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 173 | 173 | AY.42 | 0.00696 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 170 | 170 | P.1.15 | 0.039498 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 91 | 91 | B.1 | 0.000834 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 86 | 86 | B.1.637 | 0.006284 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 75 | 75 | AY.44 | 0.000457 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 74 | 74 | B.1.160 | 0.002308 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 68 | 68 | B.1.2 | 0.000599 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 66 | 66 | AY.102 | 0.00175 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 63 | 63 | B.1.36.19 | 0.583333 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 61 | 61 | P.5 | 0.835616 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 59 | 59 | B.1.235 | 0.148615 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 57 | 57 | B.1.429 | 0.001341 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 56 | 56 | AY.43 | 0.000248 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 49 | 49 | AY.103 | 0.000304 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 44 | 44 | AY.25 | 0.000265 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 40 | 40 | B.1.1.39 | 0.020387 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 40 | 40 | P.1 | 0.00063 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 37 | 37 | AY.39 | 0.000914 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 34 | 34 | B.1.1.28 | 0.010582 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 30 | 30 | AY.6 | 0.001234 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 28 | 28 | AY.3 | 0.000278 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 27 | 27 | B.1.351.3 | 0.023663 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 26 | 26 | AY.5 | 0.000537 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 25 | 25 | B.1.351 | 0.000743 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 24 | 24 | AY.39.1 | 0.000951 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 19 | 19 | AY.120 | 0.000706 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 18 | 18 | AY.79 | 0.021792 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 17 | 17 | AY.16 | 0.006454 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 17 | 17 | AY.26 | 0.000481 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 17 | 17 | B.1.1.214 | 0.000943 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 16 | 16 | B.1.36 | 0.002334 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 14 | 14 | C.36.3 | 0.007941 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 13 | 13 | B.1.1 | 0.000236 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 12 | 12 | AY.106 | 0.004019 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 12 | 12 | AY.121 | 0.001624 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 12 | 12 | P.3 | 0.019139 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 11 | 11 | B.1.177 | 0.000145 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 11 | 11 | B.1.346 | 0.014417 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 10 | 10 | AY.47 | 0.000311 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 9 | 9 | AY.116.1 | 0.002803 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 9 | 9 | AY.20 | 0.00035 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 9 | 9 | B.1.596 | 0.000784 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 8 | 8 | AY.4.2 | 0.000174 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 8 | 8 | B.1.551 | 0.010323 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 7 | 7 | AY.117 | 0.000592 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 7 | 7 | AY.84 | 0.003062 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 7 | 7 | B.1.177.62 | 0.008343 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 7 | 7 | B.1.427 | 0.000353 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 7 | 7 | B.1.621 | 0.00062 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 6 | 6 | AY.33 | 0.000401 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 6 | 6 | AY.9 | 0.000406 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 6 | 6 | B.1.170 | 0.025862 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 6 | 6 | B.1.177.86 | 0.001101 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 5 | 5 | B.1.311 | 0.001373 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 5 | 5 | B.1.509 | 0.004329 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 4 | 4 | AY.97 | 0.006803 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 4 | 4 | B.1.177.41 | 0.01 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 4 | 4 | B.1.577 | 0.002749 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 3 | 3 | AY.85 | 0.001282 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 3 | 3 | AZ.2 | 0.002463 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 3 | 3 | B.1.36.31 | 0.005254 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 3 | 3 | B.1.459 | 0.012245 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 3 | 3 | B.6.6 | 0.002667 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | A.29 | 0.010638 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | AY.63 | 0.000774 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | AY.99.1 | 0.003106 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | B.1.1.485 | 0.033333 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | B.1.1.74 | 0.008621 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | B.1.177.53 | 0.004785 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | B.1.237 | 0.00995 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | B.1.377 | 0.009132 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | B.1.456 | 0.006536 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | B.1.81 | 0.042553 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | AY.15 | 0.002222 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | AZ.6 | 0.008403 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.1.219 | 0.005 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.160.25 | 0.011111 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.442 | 0.035714 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 377 | D377D | gaC | gaT | 1 | 1 | W.1 | 0.008696 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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