CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 377

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12377D377DD4769DsyngaCgaT37453745114569-14571
ORF1ab/nsp12377D377delD4769deldelGAC---8282114569-14571
ORF1ab/nsp12377D377ED4769EnonsyngaCgaA1190.81818214569-14571
ORF1ab/nsp12377D377ED4769EnonsyngaCgaG1120.18181814569-14571
ORF1ab/nsp12377D377YD4769YnonsynGacTac1010114569-14571
ORF1ab/nsp12377D377GD4769GnonsyngAcgGc850.62514569-14571
ORF1ab/nsp12377D377GD4769GnonsyngACgGT820.2514569-14571
ORF1ab/nsp12377D377GD4769GnonsyngACgGG810.12514569-14571
ORF1ab/nsp12377D377AD4769AnonsyngAcgCc750.71428614569-14571
ORF1ab/nsp12377D377AD4769AnonsyngACgCT720.28571414569-14571
ORF1ab/nsp12377D377del2D4769del2delgACg--66114569-14571
ORF1ab/nsp12377D377VD4769VnonsyngAcgTc650.83333314569-14571
ORF1ab/nsp12377D377ND4769NnonsynGacAac650.83333314569-14571
ORF1ab/nsp12377D377VD4769VnonsyngACgTG610.16666714569-14571
ORF1ab/nsp12377D377ND4769NnonsynGaCAaT610.16666714569-14571
ORF1ab/nsp12377D377del1D4769del1delgaCga-320.66666714569-14571
ORF1ab/nsp12377D377CD4769CnonsynGAcTGc320.66666714569-14571
ORF1ab/nsp12377D377CD4769CnonsynGACTGT310.33333314569-14571
ORF1ab/nsp12377D377del1D4769del1delgAcg-c310.33333314569-14571
ORF1ab/nsp12377D377SD4769SnonsynGAcAGc210.514569-14571
ORF1ab/nsp12377D377SD4769SnonsynGACAGT210.514569-14571
ORF1ab/nsp12377D377RD4769RnonsynGACAGG11114569-14571
ORF1ab/nsp12377D377KD4769KnonsynGaCAaG11114569-14571
ORF1ab/nsp12377D377FD4769FnonsynGAcTTc11114569-14571
ORF1ab/nsp12377D377HD4769HnonsynGacCac11114569-14571

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12377D377DgaCgaT37453745All0.000716
ORF1ab/nsp12377D377DgaCgaT576576AY.40.000896
ORF1ab/nsp12377D377DgaCgaT570570B.1.1.70.00051
ORF1ab/nsp12377D377DgaCgaT339339B.1.5260.007968
ORF1ab/nsp12377D377DgaCgaT199199B.1.617.20.000749
ORF1ab/nsp12377D377DgaCgaT173173AY.420.00696
ORF1ab/nsp12377D377DgaCgaT170170P.1.150.039498
ORF1ab/nsp12377D377DgaCgaT9191B.10.000834
ORF1ab/nsp12377D377DgaCgaT8686B.1.6370.006284
ORF1ab/nsp12377D377delGAC---8282All0.000016
ORF1ab/nsp12377D377DgaCgaT7575AY.440.000457
ORF1ab/nsp12377D377DgaCgaT7474B.1.1600.002308
ORF1ab/nsp12377D377DgaCgaT6868B.1.20.000599
ORF1ab/nsp12377D377DgaCgaT6666AY.1020.00175
ORF1ab/nsp12377D377DgaCgaT6363B.1.36.190.583333
ORF1ab/nsp12377D377DgaCgaT6161P.50.835616
ORF1ab/nsp12377D377DgaCgaT5959B.1.2350.148615
ORF1ab/nsp12377D377DgaCgaT5757B.1.4290.001341
ORF1ab/nsp12377D377DgaCgaT5656AY.430.000248
ORF1ab/nsp12377D377DgaCgaT4949AY.1030.000304
ORF1ab/nsp12377D377DgaCgaT4444AY.250.000265
ORF1ab/nsp12377D377DgaCgaT4040B.1.1.390.020387
ORF1ab/nsp12377D377DgaCgaT4040P.10.00063
ORF1ab/nsp12377D377DgaCgaT3737AY.390.000914
ORF1ab/nsp12377D377delGAC---3535B.1.1.70.000031
ORF1ab/nsp12377D377DgaCgaT3434B.1.1.280.010582
ORF1ab/nsp12377D377DgaCgaT3030AY.60.001234
ORF1ab/nsp12377D377DgaCgaT2828AY.30.000278
ORF1ab/nsp12377D377DgaCgaT2727B.1.351.30.023663
ORF1ab/nsp12377D377DgaCgaT2626AY.50.000537
ORF1ab/nsp12377D377DgaCgaT2525B.1.3510.000743
ORF1ab/nsp12377D377DgaCgaT2424AY.39.10.000951
ORF1ab/nsp12377D377DgaCgaT1919AY.1200.000706
ORF1ab/nsp12377D377DgaCgaT1818AY.790.021792
ORF1ab/nsp12377D377DgaCgaT1717AY.160.006454
ORF1ab/nsp12377D377DgaCgaT1717AY.260.000481
ORF1ab/nsp12377D377DgaCgaT1717B.1.1.2140.000943
ORF1ab/nsp12377D377DgaCgaT1616B.1.360.002334
ORF1ab/nsp12377D377DgaCgaT1414C.36.30.007941
ORF1ab/nsp12377D377DgaCgaT1313B.1.10.000236
ORF1ab/nsp12377D377DgaCgaT1212AY.1060.004019
ORF1ab/nsp12377D377DgaCgaT1212AY.1210.001624
ORF1ab/nsp12377D377DgaCgaT1212P.30.019139
ORF1ab/nsp12377D377EgaCgaA911All0.000002
ORF1ab/nsp12377D377EgaCgaG211All0
ORF1ab/nsp12377D377DgaCgaT1111B.1.1770.000145
ORF1ab/nsp12377D377DgaCgaT1111B.1.3460.014417
ORF1ab/nsp12377D377YGacTac1010All0.000002
ORF1ab/nsp12377D377DgaCgaT1010AY.470.000311
ORF1ab/nsp12377D377DgaCgaT99AY.116.10.002803
ORF1ab/nsp12377D377DgaCgaT99AY.200.00035
ORF1ab/nsp12377D377DgaCgaT99B.1.5960.000784
ORF1ab/nsp12377D377GgAcgGc58All0.000001
ORF1ab/nsp12377D377GgACgGT28All0
ORF1ab/nsp12377D377GgACgGG18All0
ORF1ab/nsp12377D377DgaCgaT88AY.4.20.000174
ORF1ab/nsp12377D377DgaCgaT88B.1.5510.010323
ORF1ab/nsp12377D377DgaCgaT88C.370.000929
ORF1ab/nsp12377D377AgAcgCc57All0.000001
ORF1ab/nsp12377D377AgACgCT27All0
ORF1ab/nsp12377D377DgaCgaT77AY.1170.000592
ORF1ab/nsp12377D377DgaCgaT77AY.840.003062
ORF1ab/nsp12377D377delGAC---77B.10.000064
ORF1ab/nsp12377D377DgaCgaT77B.1.177.620.008343
ORF1ab/nsp12377D377DgaCgaT77B.1.4270.000353
ORF1ab/nsp12377D377DgaCgaT77B.1.6210.00062
ORF1ab/nsp12377D377del2gACg--66All0.000001
ORF1ab/nsp12377D377NGacAac56All0.000001
ORF1ab/nsp12377D377VgAcgTc56All0.000001
ORF1ab/nsp12377D377NGaCAaT16All0
ORF1ab/nsp12377D377VgACgTG16All0
ORF1ab/nsp12377D377DgaCgaT66AY.1180.000376
ORF1ab/nsp12377D377DgaCgaT66AY.330.000401
ORF1ab/nsp12377D377DgaCgaT66AY.90.000406
ORF1ab/nsp12377D377DgaCgaT66AY.9.20.00022
ORF1ab/nsp12377D377DgaCgaT66B.1.1700.025862
ORF1ab/nsp12377D377DgaCgaT66B.1.177.860.001101
ORF1ab/nsp12377D377delGAC---55AY.250.00003
ORF1ab/nsp12377D377EgaCgaA55B.1.1.70.000004
ORF1ab/nsp12377D377DgaCgaT55B.1.2580.000333
ORF1ab/nsp12377D377DgaCgaT55B.1.258.170.00052
ORF1ab/nsp12377D377DgaCgaT55B.1.3110.001373
ORF1ab/nsp12377D377DgaCgaT55B.1.5090.004329
ORF1ab/nsp12377D377GgAcgGc240.111111
ORF1ab/nsp12377D377GgACgGG140.055556
ORF1ab/nsp12377D377GgACgGT140.055556
ORF1ab/nsp12377D377DgaCgaT44AY.1190.000141
ORF1ab/nsp12377D377DgaCgaT44AY.610.000419
ORF1ab/nsp12377D377DgaCgaT44AY.740.000463
ORF1ab/nsp12377D377DgaCgaT44AY.970.006803
ORF1ab/nsp12377D377DgaCgaT44AY.98.10.000194
ORF1ab/nsp12377D377DgaCgaT44AY.99.20.000369
ORF1ab/nsp12377D377DgaCgaT44B.1.1.2220.000816
ORF1ab/nsp12377D377DgaCgaT44B.1.177.410.01
ORF1ab/nsp12377D377DgaCgaT44B.1.5250.000453
ORF1ab/nsp12377D377DgaCgaT44B.1.5770.002749
ORF1ab/nsp12377D377YGacTac330.166667
ORF1ab/nsp12377D377del1gaCga-23All0
ORF1ab/nsp12377D377CGAcTGc23All0
ORF1ab/nsp12377D377CGACTGT13All0
ORF1ab/nsp12377D377del1gAcg-c13All0
ORF1ab/nsp12377D377DgaCgaT33AY.1140.000693
ORF1ab/nsp12377D377DgaCgaT33AY.140.000264
ORF1ab/nsp12377D377DgaCgaT33AY.290.000047
ORF1ab/nsp12377D377DgaCgaT33AY.360.000445
ORF1ab/nsp12377D377delGAC---33AY.430.000013
ORF1ab/nsp12377D377DgaCgaT33AY.460.000312
ORF1ab/nsp12377D377DgaCgaT33AY.750.000168
ORF1ab/nsp12377D377DgaCgaT33AY.850.001282
ORF1ab/nsp12377D377DgaCgaT33AZ.20.002463
ORF1ab/nsp12377D377DgaCgaT33B.1.1.2160.002671
ORF1ab/nsp12377D377DgaCgaT33B.1.1.250.001706
ORF1ab/nsp12377D377DgaCgaT33B.1.1.3180.000905
ORF1ab/nsp12377D377DgaCgaT33B.1.1.330.001263
ORF1ab/nsp12377D377DgaCgaT33B.1.1.5190.000119
ORF1ab/nsp12377D377DgaCgaT33B.1.1.700.001023
ORF1ab/nsp12377D377DgaCgaT33B.1.36.310.005254
ORF1ab/nsp12377D377delGAC---33B.1.3670.002377
ORF1ab/nsp12377D377DgaCgaT33B.1.4590.012245
ORF1ab/nsp12377D377DgaCgaT33B.6.60.002667
ORF1ab/nsp12377D377DgaCgaT33D.20.000225
ORF1ab/nsp12377D377DgaCgaT33P.20.00056
ORF1ab/nsp12377D377SGAcAGc120.055556
ORF1ab/nsp12377D377NGacAac120.055556
ORF1ab/nsp12377D377SGACAGT120.055556
ORF1ab/nsp12377D377NGaCAaT120.055556
ORF1ab/nsp12377D377DgaCgaT22A.290.010638
ORF1ab/nsp12377D377DgaCgaT22AD.20.000438
ORF1ab/nsp12377D377SGAcAGc12All0
ORF1ab/nsp12377D377SGACAGT12All0
ORF1ab/nsp12377D377DgaCgaT22AY.1000.000092
ORF1ab/nsp12377D377DgaCgaT22AY.1130.000285
ORF1ab/nsp12377D377DgaCgaT22AY.230.000139
ORF1ab/nsp12377D377DgaCgaT22AY.370.000632
ORF1ab/nsp12377D377delGAC---22AY.4.50.000215
ORF1ab/nsp12377D377DgaCgaT22AY.46.20.001271
ORF1ab/nsp12377D377DgaCgaT22AY.46.40.000329
ORF1ab/nsp12377D377DgaCgaT22AY.540.000191
ORF1ab/nsp12377D377DgaCgaT22AY.630.000774
ORF1ab/nsp12377D377DgaCgaT22AY.640.00119
ORF1ab/nsp12377D377DgaCgaT22AY.650.001066
ORF1ab/nsp12377D377DgaCgaT22AY.99.10.003106
ORF1ab/nsp12377D377DgaCgaT22B0.000256
ORF1ab/nsp12377D377del2gACg--22B.10.000018
ORF1ab/nsp12377D377EgaCgaA22B.10.000018
ORF1ab/nsp12377D377GgAcgGc22B.10.000018
ORF1ab/nsp12377D377YGacTac22B.10.000018
ORF1ab/nsp12377D377DgaCgaT22B.1.1.1410.004024
ORF1ab/nsp12377D377DgaCgaT22B.1.1.4850.033333
ORF1ab/nsp12377D377AgAcgCc22B.1.1.70.000002
ORF1ab/nsp12377D377NGacAac22B.1.1.70.000002
ORF1ab/nsp12377D377DgaCgaT22B.1.1.740.008621
ORF1ab/nsp12377D377DgaCgaT22B.1.110.30.001437
ORF1ab/nsp12377D377DgaCgaT22B.1.1110.00235
ORF1ab/nsp12377D377delGAC---22B.1.1770.000026
ORF1ab/nsp12377D377DgaCgaT22B.1.177.530.004785
ORF1ab/nsp12377D377DgaCgaT22B.1.2370.00995
ORF1ab/nsp12377D377DgaCgaT22B.1.2430.000139
ORF1ab/nsp12377D377DgaCgaT22B.1.3770.009132
ORF1ab/nsp12377D377DgaCgaT22B.1.4560.006536
ORF1ab/nsp12377D377delGAC---22B.1.617.20.000008
ORF1ab/nsp12377D377DgaCgaT22B.1.810.042553
ORF1ab/nsp12377D377DgaCgaT22P.1.10.000635
ORF1ab/nsp12377D377DgaCgaT22P.1.140.000096
ORF1ab/nsp12377D377DgaCgaT22Q.80.00033
ORF1ab/nsp12377D377FGAcTTc110.055556
ORF1ab/nsp12377D377VgAcgTc110.055556
ORF1ab/nsp12377D377DgaCgaT110.055556
ORF1ab/nsp12377D377EgaCgaG110.055556
ORF1ab/nsp12377D377RGACAGG110.055556
ORF1ab/nsp12377D377KGaCAaG110.055556
ORF1ab/nsp12377D377CGAcTGc110.055556
ORF1ab/nsp12377D377RGACAGG11All0
ORF1ab/nsp12377D377KGaCAaG11All0
ORF1ab/nsp12377D377FGAcTTc11All0
ORF1ab/nsp12377D377HGacCac11All0
ORF1ab/nsp12377D377DgaCgaT11AT.10.005128
ORF1ab/nsp12377D377EgaCgaA11AY.1000.000046
ORF1ab/nsp12377D377delGAC---11AY.1030.000006
ORF1ab/nsp12377D377DgaCgaT11AY.1050.000643
ORF1ab/nsp12377D377DgaCgaT11AY.150.002222
ORF1ab/nsp12377D377DgaCgaT11AY.16.10.00047
ORF1ab/nsp12377D377DgaCgaT11AY.3.10.000085
ORF1ab/nsp12377D377DgaCgaT11AY.340.000097
ORF1ab/nsp12377D377delGAC---11AY.40.000002
ORF1ab/nsp12377D377DgaCgaT11AY.450.000122
ORF1ab/nsp12377D377DgaCgaT11AY.46.10.001027
ORF1ab/nsp12377D377del2gACg--11AY.46.20.000635
ORF1ab/nsp12377D377delGAC---11AY.5.30.000337
ORF1ab/nsp12377D377DgaCgaT11AY.5.40.000277
ORF1ab/nsp12377D377delGAC---11AY.650.000533
ORF1ab/nsp12377D377delGAC---11AY.660.00107
ORF1ab/nsp12377D377DgaCgaT11AY.680.000274
ORF1ab/nsp12377D377delGAC---11AY.720.001361
ORF1ab/nsp12377D377delGAC---11AY.90.000068
ORF1ab/nsp12377D377delGAC---11AY.9.20.000037
ORF1ab/nsp12377D377DgaCgaT11AY.920.000287
ORF1ab/nsp12377D377DgaCgaT11AY.980.000079
ORF1ab/nsp12377D377delGAC---11AY.990.001049
ORF1ab/nsp12377D377delGAC---11AY.99.10.001553
ORF1ab/nsp12377D377DgaCgaT11AZ.10.000867
ORF1ab/nsp12377D377DgaCgaT11AZ.60.008403
ORF1ab/nsp12377D377EgaCgaG11B0.000128
ORF1ab/nsp12377D377YGacTac11B0.000128
ORF1ab/nsp12377D377VgAcgTc11B.10.000009
ORF1ab/nsp12377D377del2gACg--11B.1.10.000018
ORF1ab/nsp12377D377delGAC---11B.1.10.000018
ORF1ab/nsp12377D377AgACgCT11B.1.10.000018
ORF1ab/nsp12377D377NGacAac11B.1.10.000018
ORF1ab/nsp12377D377GgACgGT11B.1.10.000018
ORF1ab/nsp12377D377del1gaCga-11B.1.10.000018
ORF1ab/nsp12377D377VgACgTG11B.1.1.1530.001095
ORF1ab/nsp12377D377DgaCgaT11B.1.1.1890.001513
ORF1ab/nsp12377D377DgaCgaT11B.1.1.2190.005
ORF1ab/nsp12377D377DgaCgaT11B.1.1.2320.001815
ORF1ab/nsp12377D377DgaCgaT11B.1.1.3060.000438
ORF1ab/nsp12377D377AgACgCT11B.1.1.3060.000438
ORF1ab/nsp12377D377delGAC---11B.1.1.3110.000358
ORF1ab/nsp12377D377DgaCgaT11B.1.1.3110.000358
ORF1ab/nsp12377D377DgaCgaT11B.1.1.3690.000446
ORF1ab/nsp12377D377DgaCgaT11B.1.1.370.000193
ORF1ab/nsp12377D377DgaCgaT11B.1.1.3720.000689
ORF1ab/nsp12377D377DgaCgaT11B.1.1.4170.002703
ORF1ab/nsp12377D377DgaCgaT11B.1.1.4320.001266
ORF1ab/nsp12377D377DgaCgaT11B.1.1.4480.002033
ORF1ab/nsp12377D377DgaCgaT11B.1.1.500.000679
ORF1ab/nsp12377D377DgaCgaT11B.1.1.5070.008696
ORF1ab/nsp12377D377DgaCgaT11B.1.1.510.001718
ORF1ab/nsp12377D377del2gACg--11B.1.1.70.000001
ORF1ab/nsp12377D377del1gaCga-11B.1.1.70.000001
ORF1ab/nsp12377D377delGAC---11B.1.1.700.000341
ORF1ab/nsp12377D377DgaCgaT11B.1.1390.000733
ORF1ab/nsp12377D377DgaCgaT11B.1.1460.004237
ORF1ab/nsp12377D377delGAC---11B.1.1600.000031
ORF1ab/nsp12377D377CGACTGT11B.1.1600.000031
ORF1ab/nsp12377D377AgAcgCc11B.1.1600.000031
ORF1ab/nsp12377D377DgaCgaT11B.1.160.250.011111
ORF1ab/nsp12377D377del2gACg--11B.1.1770.000013
ORF1ab/nsp12377D377DgaCgaT11B.1.177.120.000152
ORF1ab/nsp12377D377DgaCgaT11B.1.177.210.000076
ORF1ab/nsp12377D377delGAC---11B.1.177.540.000606
ORF1ab/nsp12377D377DgaCgaT11B.1.177.600.000218
ORF1ab/nsp12377D377DgaCgaT11B.1.177.730.000566
ORF1ab/nsp12377D377DgaCgaT11B.1.177.830.001481
ORF1ab/nsp12377D377del1gAcg-c11B.1.20.000009
ORF1ab/nsp12377D377YGacTac11B.1.20.000009
ORF1ab/nsp12377D377YGacTac11B.1.2210.000071
ORF1ab/nsp12377D377DgaCgaT11B.1.2210.000071
ORF1ab/nsp12377D377CGAcTGc11B.1.2210.000071
ORF1ab/nsp12377D377GgAcgGc11B.1.2210.000071
ORF1ab/nsp12377D377VgAcgTc11B.1.2210.000071
ORF1ab/nsp12377D377DgaCgaT11B.1.2340.000132
ORF1ab/nsp12377D377DgaCgaT11B.1.2400.000216
ORF1ab/nsp12377D377delGAC---11B.1.2580.000067
ORF1ab/nsp12377D377NGacAac11B.1.2580.000067
ORF1ab/nsp12377D377DgaCgaT11B.1.2650.001271
ORF1ab/nsp12377D377AgAcgCc11B.1.3110.000275
ORF1ab/nsp12377D377delGAC---11B.1.3260.007576
ORF1ab/nsp12377D377DgaCgaT11B.1.3400.004292
ORF1ab/nsp12377D377DgaCgaT11B.1.3490.000715
ORF1ab/nsp12377D377YGacTac11B.1.3510.00003
ORF1ab/nsp12377D377DgaCgaT11B.1.351.20.000303
ORF1ab/nsp12377D377DgaCgaT11B.1.3690.000285
ORF1ab/nsp12377D377AgAcgCc11B.1.3990.001934
ORF1ab/nsp12377D377DgaCgaT11B.1.438.10.000107
ORF1ab/nsp12377D377DgaCgaT11B.1.4420.035714
ORF1ab/nsp12377D377DgaCgaT11B.1.4620.007246
ORF1ab/nsp12377D377DgaCgaT11B.1.4650.003802
ORF1ab/nsp12377D377DgaCgaT11B.1.5170.000427
ORF1ab/nsp12377D377delGAC---11B.1.5170.000427
ORF1ab/nsp12377D377delGAC---11B.1.5250.000113
ORF1ab/nsp12377D377VgAcgTc11B.1.5260.000024
ORF1ab/nsp12377D377DgaCgaT11B.1.5580.004566
ORF1ab/nsp12377D377DgaCgaT11B.1.5600.00463
ORF1ab/nsp12377D377delGAC---11B.1.5610.000397
ORF1ab/nsp12377D377DgaCgaT11B.1.5950.000261
ORF1ab/nsp12377D377delGAC---11B.1.617.10.000129
ORF1ab/nsp12377D377HGacCac11B.1.617.20.000004
ORF1ab/nsp12377D377YGacTac11B.1.617.20.000004
ORF1ab/nsp12377D377DgaCgaT11B.1.621.10.000506
ORF1ab/nsp12377D377DgaCgaT11B.1.6250.002353
ORF1ab/nsp12377D377VgAcgTc11B.1.6370.000073
ORF1ab/nsp12377D377DgaCgaT11B.310.003731
ORF1ab/nsp12377D377DgaCgaT11B.400.000364
ORF1ab/nsp12377D377DgaCgaT11C.300.001727
ORF1ab/nsp12377D377EgaCgaA11C.360.000911
ORF1ab/nsp12377D377delGAC---11P.1.10.000318
ORF1ab/nsp12377D377DgaCgaT11P.1.120.000484
ORF1ab/nsp12377D377DgaCgaT11P.1.130.000898
ORF1ab/nsp12377D377DgaCgaT11P.1.20.001156
ORF1ab/nsp12377D377DgaCgaT11P.1.70.000319
ORF1ab/nsp12377D377DgaCgaT11Q.10.000126
ORF1ab/nsp12377D377delGAC---11Q.20.000613
ORF1ab/nsp12377D377DgaCgaT11W.10.008696