CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 353

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12353V353delV4745deldelGTT---221221114497-14499
ORF1ab/nsp12353V353IV4745InonsynGttAtt1501490.99333314497-14499
ORF1ab/nsp12353V353IV4745InonsynGtTAtC15010.0066666714497-14499
ORF1ab/nsp12353V353VV4745VsyngtTgtC95810.85263214497-14499
ORF1ab/nsp12353V353VV4745VsyngtTgtG9590.094736814497-14499
ORF1ab/nsp12353V353VV4745VsyngtTgtA9550.052631614497-14499
ORF1ab/nsp12353V353AV4745AnonsyngTtgCt23220.95652214497-14499
ORF1ab/nsp12353V353AV4745AnonsyngTTgCC2310.043478314497-14499
ORF1ab/nsp12353V353del1V4745del1delgtTgt-1190.81818214497-14499
ORF1ab/nsp12353V353del1V4745del1delGtt-tt1120.18181814497-14499
ORF1ab/nsp12353V353FV4745FnonsynGttTtt1010114497-14499
ORF1ab/nsp12353V353GV4745GnonsyngTtgGt88114497-14499
ORF1ab/nsp12353V353DV4745DnonsyngTtgAt870.87514497-14499
ORF1ab/nsp12353V353DV4745DnonsyngTTgAC810.12514497-14499
ORF1ab/nsp12353V353LV4745LnonsynGttCtt650.83333314497-14499
ORF1ab/nsp12353V353LV4745LnonsynGtTCtG610.16666714497-14499
ORF1ab/nsp12353V353CV4745CnonsynGTtTGt22114497-14499
ORF1ab/nsp12353V353TV4745TnonsynGTtACt22114497-14499
ORF1ab/nsp12353V353WV4745WnonsynGTTTGG11114497-14499
ORF1ab/nsp12353V353RV4745RnonsynGTTAGG11114497-14499
ORF1ab/nsp12353V353YV4745YnonsynGTtTAt11114497-14499
ORF1ab/nsp12353V353SV4745SnonsynGTTAGC11114497-14499
ORF1ab/nsp12353V353del2V4745del2delgTTg--11114497-14499

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12353V353delGTT---221221All0.000042
ORF1ab/nsp12353V353IGttAtt149150All0.000028
ORF1ab/nsp12353V353IGtTAtC1150All0
ORF1ab/nsp12353V353VgtTgtC8195All0.000015
ORF1ab/nsp12353V353VgtTgtG995All0.000002
ORF1ab/nsp12353V353VgtTgtA595All0.000001
ORF1ab/nsp12353V353delGTT---8585B.1.1.70.000076
ORF1ab/nsp12353V353IGttAtt3131AY.440.000189
ORF1ab/nsp12353V353VgtTgtC2427AY.40.000037
ORF1ab/nsp12353V353VgtTgtG227AY.40.000003
ORF1ab/nsp12353V353VgtTgtA127AY.40.000002
ORF1ab/nsp12353V353AgTtgCt2223All0.000004
ORF1ab/nsp12353V353AgTTgCC123All0
ORF1ab/nsp12353V353IGttAtt1919AY.430.000084
ORF1ab/nsp12353V353IGttAtt1616AY.40.000025
ORF1ab/nsp12353V353delGTT---1515B.1.617.20.000056
ORF1ab/nsp12353V353VgtTgtC1414G.10.583333
ORF1ab/nsp12353V353VgtTgtC1313B.1.1.70.000012
ORF1ab/nsp12353V353IGttAtt1313B.1.617.20.000049
ORF1ab/nsp12353V353del1gtTgt-911All0.000002
ORF1ab/nsp12353V353del1Gtt-tt211All0
ORF1ab/nsp12353V353delGTT---1111B.10.000101
ORF1ab/nsp12353V353AgTtgCt1111B.1.1.4340.003834
ORF1ab/nsp12353V353FGttTtt1010All0.000002
ORF1ab/nsp12353V353delGTT---1010AY.40.000016
ORF1ab/nsp12353V353IGttAtt1010B.1.1.70.000009
ORF1ab/nsp12353V353GgTtgGt88All0.000002
ORF1ab/nsp12353V353DgTtgAt78All0.000001
ORF1ab/nsp12353V353DgTTgAC18All0
ORF1ab/nsp12353V353IGttAtt77B.1.20.000062
ORF1ab/nsp12353V353LGttCtt56All0.000001
ORF1ab/nsp12353V353LGtTCtG16All0
ORF1ab/nsp12353V353IGttAtt66AY.540.000572
ORF1ab/nsp12353V353IGttAtt56P.10.000079
ORF1ab/nsp12353V353IGtTAtC16P.10.000016
ORF1ab/nsp12353V353IGttAtt55AY.470.000156
ORF1ab/nsp12353V353delGTT---44AY.1020.000106
ORF1ab/nsp12353V353delGTT---44AY.1080.00441
ORF1ab/nsp12353V353VgtTgtC44AY.440.000024
ORF1ab/nsp12353V353VgtTgtG24B.10.000018
ORF1ab/nsp12353V353VgtTgtC24B.10.000018
ORF1ab/nsp12353V353delGTT---44B.1.10.000073
ORF1ab/nsp12353V353FGttTtt44B.1.1.70.000004
ORF1ab/nsp12353V353delGTT---44B.1.5250.000453
ORF1ab/nsp12353V353VgtTgtC44B.1.617.20.000015
ORF1ab/nsp12353V353VgtTgtC33AY.30.00003
ORF1ab/nsp12353V353IGttAtt33AY.300.001187
ORF1ab/nsp12353V353delGTT---33AY.4.50.000322
ORF1ab/nsp12353V353delGTT---33AY.430.000013
ORF1ab/nsp12353V353VgtTgtC33AY.430.000013
ORF1ab/nsp12353V353delGTT---33AY.9.20.00011
ORF1ab/nsp12353V353IGttAtt33B.10.000027
ORF1ab/nsp12353V353IGttAtt33B.1.10.000054
ORF1ab/nsp12353V353AgTtgCt33B.1.1.70.000003
ORF1ab/nsp12353V353del1gtTgt-23B.1.1.70.000002
ORF1ab/nsp12353V353del1Gtt-tt13B.1.1.70.000001
ORF1ab/nsp12353V353delGTT---33B.1.20.000026
ORF1ab/nsp12353V353delGTT---33B.1.2580.0002
ORF1ab/nsp12353V353IGttAtt33B.1.3510.000089
ORF1ab/nsp12353V353delGTT---33B.1.3510.000089
ORF1ab/nsp12353V353VgtTgtG33B.1.36.80.003
ORF1ab/nsp12353V353delGTT---33B.1.3670.002377
ORF1ab/nsp12353V353delGTT---220.111111
ORF1ab/nsp12353V353TGTtACt220.111111
ORF1ab/nsp12353V353IGttAtt220.111111
ORF1ab/nsp12353V353TGTtACt22All0
ORF1ab/nsp12353V353CGTtTGt22All0
ORF1ab/nsp12353V353IGttAtt22AY.1030.000012
ORF1ab/nsp12353V353VgtTgtC22AY.1030.000012
ORF1ab/nsp12353V353VgtTgtC22AY.200.000078
ORF1ab/nsp12353V353AgTTgCC12AY.430.000004
ORF1ab/nsp12353V353DgTtgAt12AY.430.000004
ORF1ab/nsp12353V353AgTtgCt12AY.430.000004
ORF1ab/nsp12353V353DgTTgAC12AY.430.000004
ORF1ab/nsp12353V353LGtTCtG12AY.440.000006
ORF1ab/nsp12353V353LGttCtt12AY.440.000006
ORF1ab/nsp12353V353delGTT---22AY.750.000112
ORF1ab/nsp12353V353delGTT---22AY.990.002099
ORF1ab/nsp12353V353IGttAtt22B.1.1.370.000386
ORF1ab/nsp12353V353delGTT---22B.1.177.540.001213
ORF1ab/nsp12353V353IGttAtt22B.1.3670.001585
ORF1ab/nsp12353V353IGttAtt22B.1.4780.023529
ORF1ab/nsp12353V353delGTT---22B.1.617.10.000258
ORF1ab/nsp12353V353FGttTtt22D.20.00015
ORF1ab/nsp12353V353delGTT---11AE.20.058824
ORF1ab/nsp12353V353del2gTTg--11All0
ORF1ab/nsp12353V353WGTTTGG11All0
ORF1ab/nsp12353V353RGTTAGG11All0
ORF1ab/nsp12353V353YGTtTAt11All0
ORF1ab/nsp12353V353SGTTAGC11All0
ORF1ab/nsp12353V353del2gTTg--11AY.1020.000027
ORF1ab/nsp12353V353VgtTgtA11AY.1020.000027
ORF1ab/nsp12353V353DgTtgAt11AY.1030.000006
ORF1ab/nsp12353V353delGTT---11AY.1070.000466
ORF1ab/nsp12353V353delGTT---11AY.1110.000183
ORF1ab/nsp12353V353VgtTgtC11AY.1110.000183
ORF1ab/nsp12353V353AgTtgCt11AY.1170.000085
ORF1ab/nsp12353V353VgtTgtA11AY.1190.000035
ORF1ab/nsp12353V353CGTtTGt11AY.1210.000135
ORF1ab/nsp12353V353delGTT---11AY.190.00114
ORF1ab/nsp12353V353FGttTtt11AY.200.000039
ORF1ab/nsp12353V353IGttAtt11AY.200.000039
ORF1ab/nsp12353V353GgTtgGt11AY.250.000006
ORF1ab/nsp12353V353delGTT---11AY.250.000006
ORF1ab/nsp12353V353VgtTgtC11AY.250.000006
ORF1ab/nsp12353V353IGttAtt11AY.250.000006
ORF1ab/nsp12353V353IGttAtt11AY.260.000028
ORF1ab/nsp12353V353delGTT---11AY.260.000028
ORF1ab/nsp12353V353delGTT---11AY.30.00001
ORF1ab/nsp12353V353IGttAtt11AY.30.00001
ORF1ab/nsp12353V353VgtTgtC11AY.300.000396
ORF1ab/nsp12353V353IGttAtt11AY.320.000532
ORF1ab/nsp12353V353delGTT---11AY.360.000148
ORF1ab/nsp12353V353del1gtTgt-11AY.370.000316
ORF1ab/nsp12353V353IGttAtt11AY.390.000025
ORF1ab/nsp12353V353LGttCtt11AY.40.000002
ORF1ab/nsp12353V353FGttTtt11AY.40.000002
ORF1ab/nsp12353V353AgTtgCt11AY.40.000002
ORF1ab/nsp12353V353IGttAtt11AY.4.20.000022
ORF1ab/nsp12353V353IGttAtt11AY.420.00004
ORF1ab/nsp12353V353delGTT---11AY.420.00004
ORF1ab/nsp12353V353LGttCtt11AY.420.00004
ORF1ab/nsp12353V353GgTtgGt11AY.430.000004
ORF1ab/nsp12353V353del1gtTgt-11AY.430.000004
ORF1ab/nsp12353V353del1gtTgt-11AY.440.000006
ORF1ab/nsp12353V353delGTT---11AY.440.000006
ORF1ab/nsp12353V353delGTT---11AY.46.60.000072
ORF1ab/nsp12353V353del1Gtt-tt11AY.470.000031
ORF1ab/nsp12353V353VgtTgtC11AY.470.000031
ORF1ab/nsp12353V353IGttAtt11AY.50.000021
ORF1ab/nsp12353V353delGTT---11AY.5.40.000277
ORF1ab/nsp12353V353delGTT---11AY.620.000436
ORF1ab/nsp12353V353delGTT---11AY.650.000533
ORF1ab/nsp12353V353delGTT---11AY.670.000464
ORF1ab/nsp12353V353del1gtTgt-11AY.670.000464
ORF1ab/nsp12353V353GgTtgGt11AY.690.000187
ORF1ab/nsp12353V353delGTT---11AY.720.001361
ORF1ab/nsp12353V353DgTtgAt11AY.75.10.00018
ORF1ab/nsp12353V353delGTT---11AY.75.10.00018
ORF1ab/nsp12353V353delGTT---11AY.80.000606
ORF1ab/nsp12353V353delGTT---11AY.90.000068
ORF1ab/nsp12353V353VgtTgtA11AY.9.20.000037
ORF1ab/nsp12353V353IGttAtt11AY.910.00073
ORF1ab/nsp12353V353delGTT---11AZ.50.003509
ORF1ab/nsp12353V353del1gtTgt-11AZ.50.003509
ORF1ab/nsp12353V353DgTtgAt11B.10.000009
ORF1ab/nsp12353V353FGttTtt11B.10.000009
ORF1ab/nsp12353V353LGttCtt11B.10.000009
ORF1ab/nsp12353V353del1gtTgt-11B.10.000009
ORF1ab/nsp12353V353VgtTgtC11B.1.10.000018
ORF1ab/nsp12353V353DgTtgAt11B.1.1.10.000327
ORF1ab/nsp12353V353delGTT---11B.1.1.1390.022727
ORF1ab/nsp12353V353delGTT---11B.1.1.1920.002309
ORF1ab/nsp12353V353IGttAtt11B.1.1.2180.007692
ORF1ab/nsp12353V353delGTT---11B.1.1.2180.007692
ORF1ab/nsp12353V353delGTT---11B.1.1.2210.010101
ORF1ab/nsp12353V353DgTtgAt11B.1.1.280.000311
ORF1ab/nsp12353V353delGTT---11B.1.1.2840.000107
ORF1ab/nsp12353V353delGTT---11B.1.1.2880.001916
ORF1ab/nsp12353V353AgTtgCt11B.1.1.3060.000438
ORF1ab/nsp12353V353delGTT---11B.1.1.370.000193
ORF1ab/nsp12353V353delGTT---11B.1.1.390.00051
ORF1ab/nsp12353V353GgTtgGt11B.1.1.3980.003226
ORF1ab/nsp12353V353delGTT---11B.1.1.5190.00004
ORF1ab/nsp12353V353VgtTgtC11B.1.1.5190.00004
ORF1ab/nsp12353V353YGTtTAt11B.1.1.70.000001
ORF1ab/nsp12353V353RGTTAGG11B.1.1.70.000001
ORF1ab/nsp12353V353CGTtTGt11B.1.1.70.000001
ORF1ab/nsp12353V353VgtTgtG11B.1.1.80.003584
ORF1ab/nsp12353V353VgtTgtC11B.1.1600.000031
ORF1ab/nsp12353V353delGTT---11B.1.1610.017241
ORF1ab/nsp12353V353AgTtgCt11B.1.1770.000013
ORF1ab/nsp12353V353delGTT---11B.1.1770.000013
ORF1ab/nsp12353V353delGTT---11B.1.177.40.000211
ORF1ab/nsp12353V353delGTT---11B.1.177.570.000281
ORF1ab/nsp12353V353delGTT---11B.1.177.620.001192
ORF1ab/nsp12353V353delGTT---11B.1.177.830.001481
ORF1ab/nsp12353V353delGTT---11B.1.177.860.000183
ORF1ab/nsp12353V353delGTT---11B.1.1950.005025
ORF1ab/nsp12353V353LGttCtt11B.1.20.000009
ORF1ab/nsp12353V353WGTTTGG11B.1.20.000009
ORF1ab/nsp12353V353VgtTgtA11B.1.20.000009
ORF1ab/nsp12353V353VgtTgtG11B.1.214.20.0006
ORF1ab/nsp12353V353delGTT---11B.1.2210.000071
ORF1ab/nsp12353V353VgtTgtC11B.1.2340.000132
ORF1ab/nsp12353V353AgTtgCt11B.1.2430.00007
ORF1ab/nsp12353V353FGttTtt11B.1.2430.00007
ORF1ab/nsp12353V353VgtTgtC11B.1.2580.000067
ORF1ab/nsp12353V353DgTtgAt11B.1.3510.00003
ORF1ab/nsp12353V353delGTT---11B.1.351.30.000876
ORF1ab/nsp12353V353delGTT---11B.1.360.000146
ORF1ab/nsp12353V353delGTT---11B.1.36.180.00042
ORF1ab/nsp12353V353delGTT---11B.1.36.310.001751
ORF1ab/nsp12353V353GgTtgGt11B.1.3620.001541
ORF1ab/nsp12353V353delGTT---11B.1.3960.000706
ORF1ab/nsp12353V353IGttAtt11B.1.4290.000024
ORF1ab/nsp12353V353IGttAtt11B.1.438.10.000107
ORF1ab/nsp12353V353delGTT---11B.1.4460.02
ORF1ab/nsp12353V353GgTtgGt11B.1.4590.004082
ORF1ab/nsp12353V353GgTtgGt11B.1.466.20.000391
ORF1ab/nsp12353V353VgtTgtC11B.1.5150.014493
ORF1ab/nsp12353V353delGTT---11B.1.5170.000427
ORF1ab/nsp12353V353AgTtgCt11B.1.5230.002451
ORF1ab/nsp12353V353GgTtgGt11B.1.5250.000113
ORF1ab/nsp12353V353delGTT---11B.1.5800.004065
ORF1ab/nsp12353V353SGTTAGC11B.1.617.10.000129
ORF1ab/nsp12353V353delGTT---11B.1.6210.000089
ORF1ab/nsp12353V353delGTT---11B.1.6300.005236
ORF1ab/nsp12353V353AgTtgCt11B.1.6370.000073
ORF1ab/nsp12353V353delGTT---11B.1.6370.000073
ORF1ab/nsp12353V353delGTT---11C.170.055556
ORF1ab/nsp12353V353delGTT---11C.360.000911
ORF1ab/nsp12353V353IGttAtt11C.370.000116
ORF1ab/nsp12353V353delGTT---11P.10.000016
ORF1ab/nsp12353V353del1gtTgt-11P.1.10.000318
ORF1ab/nsp12353V353delGTT---11P.1.100.000269
ORF1ab/nsp12353V353IGttAtt11Q.40.000455