CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 345 & Codon = ggG

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12345G345GG4737GsynggAggG16363163030.99633314473-14475

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12345G345GggAggG1630316363All0.003118
ORF1ab/nsp12345G345GggAggG1544015440AY.270.999288
ORF1ab/nsp12345G345GggAggG148163B.1.1.70.000132
ORF1ab/nsp12345G345GggAggG119121B.1.617.20.000448
ORF1ab/nsp12345G345GggAggG113115AY.40.000176
ORF1ab/nsp12345G345GggAggG6767AY.370.021176
ORF1ab/nsp12345G345GggAggG5256AY.430.00023
ORF1ab/nsp12345G345GggAggG4043AY.1030.000248
ORF1ab/nsp12345G345GggAggG4040B.1.4290.000941
ORF1ab/nsp12345G345GggAggG2427AY.750.001345
ORF1ab/nsp12345G345GggAggG1919AY.740.002197
ORF1ab/nsp12345G345GggAggG1617AY.470.000498
ORF1ab/nsp12345G345GggAggG1616AY.160.006074
ORF1ab/nsp12345G345GggAggG1515AY.880.013263
ORF1ab/nsp12345G345GggAggG714AY.440.000043
ORF1ab/nsp12345G345GggAggG1112AY.250.000066
ORF1ab/nsp12345G345GggAggG1212AY.75.10.002164
ORF1ab/nsp12345G345GggAggG910B.10.000082
ORF1ab/nsp12345G345GggAggG99AY.260.000255
ORF1ab/nsp12345G345GggAggG79AY.50.000145
ORF1ab/nsp12345G345GggAggG88AY.390.000198
ORF1ab/nsp12345G345GggAggG67AY.1190.000212
ORF1ab/nsp12345G345GggAggG77AY.280.013233
ORF1ab/nsp12345G345GggAggG66B.1.6370.000438
ORF1ab/nsp12345G345GggAggG46P.10.000063
ORF1ab/nsp12345G345GggAggG55AY.620.002179
ORF1ab/nsp12345G345GggAggG45AY.90.00027
ORF1ab/nsp12345G345GggAggG55B.1.1.5190.000199
ORF1ab/nsp12345G345GggAggG45B.1.20.000035
ORF1ab/nsp12345G345GggAggG34AY.1020.00008
ORF1ab/nsp12345G345GggAggG34AY.200.000117
ORF1ab/nsp12345G345GggAggG44B.1.1.1590.018692
ORF1ab/nsp12345G345GggAggG44B.1.1.5230.00625
ORF1ab/nsp12345G345GggAggG330.166667
ORF1ab/nsp12345G345GggAggG23AY.670.000929
ORF1ab/nsp12345G345GggAggG33B.1.1600.000094
ORF1ab/nsp12345G345GggAggG33B.1.3510.000089
ORF1ab/nsp12345G345GggAggG23B.1.5260.000047
ORF1ab/nsp12345G345GggAggG33Q.10.000379
ORF1ab/nsp12345G345GggAggG22AY.1000.000092
ORF1ab/nsp12345G345GggAggG22AY.1210.000271
ORF1ab/nsp12345G345GggAggG22AY.130.000322
ORF1ab/nsp12345G345GggAggG12AY.39.10.00004
ORF1ab/nsp12345G345GggAggG22AY.70.000392
ORF1ab/nsp12345G345GggAggG22B.1.10.000036
ORF1ab/nsp12345G345GggAggG22B.1.1.2160.001781
ORF1ab/nsp12345G345GggAggG22B.1.1770.000026
ORF1ab/nsp12345G345GggAggG22B.1.177.870.001456
ORF1ab/nsp12345G345GggAggG22B.1.258.170.000208
ORF1ab/nsp12345G345GggAggG22B.1.3110.000549
ORF1ab/nsp12345G345GggAggG22B.1.4130.008511
ORF1ab/nsp12345G345GggAggG22B.1.6040.034483
ORF1ab/nsp12345G345GggAggG22C.360.001821
ORF1ab/nsp12345G345GggAggG11AY.1050.000643
ORF1ab/nsp12345G345GggAggG11AY.1170.000085
ORF1ab/nsp12345G345GggAggG11AY.120.000316
ORF1ab/nsp12345G345GggAggG11AY.330.000067
ORF1ab/nsp12345G345GggAggG11AY.360.000148
ORF1ab/nsp12345G345GggAggG11AY.460.000104
ORF1ab/nsp12345G345GggAggG11AY.46.20.000635
ORF1ab/nsp12345G345GggAggG11AY.520.000814
ORF1ab/nsp12345G345GggAggG11AY.530.000288
ORF1ab/nsp12345G345GggAggG11AY.610.000105
ORF1ab/nsp12345G345GggAggG11AY.930.000273
ORF1ab/nsp12345G345GggAggG11AY.98.10.000048
ORF1ab/nsp12345G345GggAggG11B.1.1.2140.000055
ORF1ab/nsp12345G345GggAggG11B.1.1.4160.000905
ORF1ab/nsp12345G345GggAggG11B.1.1.630.000386
ORF1ab/nsp12345G345GggAggG11B.1.1310.008772
ORF1ab/nsp12345G345GggAggG11B.1.177.210.000076
ORF1ab/nsp12345G345GggAggG11B.1.177.350.000691
ORF1ab/nsp12345G345GggAggG11B.1.2340.000132
ORF1ab/nsp12345G345GggAggG11B.1.3130.006579
ORF1ab/nsp12345G345GggAggG11B.1.360.000146
ORF1ab/nsp12345G345GggAggG11B.1.4260.001009
ORF1ab/nsp12345G345GggAggG11B.1.4830.111111
ORF1ab/nsp12345G345GggAggG11B.1.5410.004425
ORF1ab/nsp12345G345GggAggG11B.1.5880.00091
ORF1ab/nsp12345G345GggAggG11B.1.6190.000871
ORF1ab/nsp12345G345GggAggG11C.350.000774
ORF1ab/nsp12345G345GggAggG11C.370.000116
ORF1ab/nsp12345G345GggAggG11C.390.018868
ORF1ab/nsp12345G345GggAggG11N.50.001767
ORF1ab/nsp12345G345GggAggG11P.1.140.000048
ORF1ab/nsp12345G345GggAggG11P.1.70.000319
ORF1ab/nsp12345G345GggAggG11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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