CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 345 | G345G | G4737G | syn | ggA | ggG | 16363 | 16303 | 0.996333 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345G | G4737G | syn | ggA | ggC | 16363 | 46 | 0.00281122 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345G | G4737G | syn | ggA | ggT | 16363 | 14 | 0.000855589 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345del | G4737del | del | GGA | --- | 120 | 120 | 1 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345R | G4737R | nonsyn | Gga | Aga | 18 | 14 | 0.777778 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345R | G4737R | nonsyn | GgA | AgG | 18 | 3 | 0.166667 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345R | G4737R | nonsyn | GgA | CgG | 18 | 1 | 0.0555556 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345V | G4737V | nonsyn | gGa | gTa | 17 | 14 | 0.823529 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345V | G4737V | nonsyn | gGA | gTG | 17 | 2 | 0.117647 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345V | G4737V | nonsyn | gGA | gTT | 17 | 1 | 0.0588235 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345X | G4737X | nonsyn | Gga | Tga | 12 | 12 | 1 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345E | G4737E | nonsyn | gGa | gAa | 12 | 11 | 0.916667 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345E | G4737E | nonsyn | gGA | gAG | 12 | 1 | 0.0833333 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345del2 | G4737del2 | del | GGa | --a | 11 | 6 | 0.545455 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345del2 | G4737del2 | del | gGA | g-- | 11 | 5 | 0.454545 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345del1 | G4737del1 | del | GGA | -AG | 10 | 4 | 0.4 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345del1 | G4737del1 | del | ggA | gg- | 10 | 4 | 0.4 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345del1 | G4737del1 | del | Gga | -ga | 10 | 2 | 0.2 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345K | G4737K | nonsyn | GGa | AAa | 4 | 4 | 1 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345W | G4737W | nonsyn | GgA | TgG | 4 | 4 | 1 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345S | G4737S | nonsyn | GgA | AgT | 4 | 2 | 0.5 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345S | G4737S | nonsyn | GGA | TCG | 4 | 1 | 0.25 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345S | G4737S | nonsyn | GGa | TCa | 4 | 1 | 0.25 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345T | G4737T | nonsyn | GGa | ACa | 3 | 3 | 1 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345C | G4737C | nonsyn | GgA | TgC | 3 | 3 | 1 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345L | G4737L | nonsyn | GGa | TTa | 2 | 2 | 1 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345A | G4737A | nonsyn | gGa | gCa | 1 | 1 | 1 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345Y | G4737Y | nonsyn | GGA | TAC | 1 | 1 | 1 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345D | G4737D | nonsyn | gGA | gAT | 1 | 1 | 1 | 14473-14475 |
ORF1ab/nsp12 | 345 | G345I | G4737I | nonsyn | GGa | ATa | 1 | 1 | 1 | 14473-14475 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 16303 | 16363 | All | 0.003118 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggC | 46 | 16363 | All | 0.000009 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggT | 14 | 16363 | All | 0.000003 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 15440 | 15440 | AY.27 | 0.999288 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 148 | 163 | B.1.1.7 | 0.000132 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggC | 12 | 163 | B.1.1.7 | 0.000011 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggT | 3 | 163 | B.1.1.7 | 0.000003 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 119 | 121 | B.1.617.2 | 0.000448 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggC | 2 | 121 | B.1.617.2 | 0.000008 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 120 | 120 | All | 0.000023 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 113 | 115 | AY.4 | 0.000176 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggC | 2 | 115 | AY.4 | 0.000003 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 67 | 67 | AY.37 | 0.021176 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 52 | 56 | AY.43 | 0.00023 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggC | 3 | 56 | AY.43 | 0.000013 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggT | 1 | 56 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 53 | 53 | B.1.1.7 | 0.000047 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 40 | 43 | AY.103 | 0.000248 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggC | 2 | 43 | AY.103 | 0.000012 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggT | 1 | 43 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 40 | 40 | B.1.429 | 0.000941 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 24 | 27 | AY.75 | 0.001345 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggC | 2 | 27 | AY.75 | 0.000112 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggT | 1 | 27 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 19 | 19 | AY.74 | 0.002197 |
ORF1ab/nsp12 | 345 | G345R | Gga | Aga | 14 | 18 | All | 0.000003 |
ORF1ab/nsp12 | 345 | G345R | GgA | AgG | 3 | 18 | All | 0.000001 |
ORF1ab/nsp12 | 345 | G345R | GgA | CgG | 1 | 18 | All | 0 |
ORF1ab/nsp12 | 345 | G345V | gGa | gTa | 14 | 17 | All | 0.000003 |
ORF1ab/nsp12 | 345 | G345V | gGA | gTG | 2 | 17 | All | 0 |
ORF1ab/nsp12 | 345 | G345V | gGA | gTT | 1 | 17 | All | 0 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 16 | 17 | AY.47 | 0.000498 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggC | 1 | 17 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 16 | 16 | AY.16 | 0.006074 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 15 | 15 | AY.88 | 0.013263 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 7 | 14 | AY.44 | 0.000043 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggC | 6 | 14 | AY.44 | 0.000037 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggT | 1 | 14 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 345 | G345X | Gga | Tga | 12 | 12 | All | 0.000002 |
ORF1ab/nsp12 | 345 | G345E | gGa | gAa | 11 | 12 | All | 0.000002 |
ORF1ab/nsp12 | 345 | G345E | gGA | gAG | 1 | 12 | All | 0 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 11 | 12 | AY.25 | 0.000066 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggC | 1 | 12 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 12 | 12 | AY.75.1 | 0.002164 |
ORF1ab/nsp12 | 345 | G345del2 | GGa | --a | 6 | 11 | All | 0.000001 |
ORF1ab/nsp12 | 345 | G345del2 | gGA | g-- | 5 | 11 | All | 0.000001 |
ORF1ab/nsp12 | 345 | G345del1 | GGA | -AG | 4 | 10 | All | 0.000001 |
ORF1ab/nsp12 | 345 | G345del1 | ggA | gg- | 4 | 10 | All | 0.000001 |
ORF1ab/nsp12 | 345 | G345del1 | Gga | -ga | 2 | 10 | All | 0 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 9 | 10 | B.1 | 0.000082 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggT | 1 | 10 | B.1 | 0.000009 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 9 | 9 | AY.26 | 0.000255 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 7 | 9 | AY.5 | 0.000145 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggC | 2 | 9 | AY.5 | 0.000041 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 8 | 8 | AY.39 | 0.000198 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 6 | 7 | AY.119 | 0.000212 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggT | 1 | 7 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 7 | 7 | AY.28 | 0.013233 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 6 | 6 | B.1.637 | 0.000438 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 4 | 6 | P.1 | 0.000063 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggC | 2 | 6 | P.1 | 0.000032 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 5 | 5 | AY.62 | 0.002179 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 4 | 5 | AY.9 | 0.00027 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggT | 1 | 5 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 345 | G345R | Gga | Aga | 4 | 5 | B.1.1 | 0.000073 |
ORF1ab/nsp12 | 345 | G345R | GgA | AgG | 1 | 5 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 4 | 5 | B.1.2 | 0.000035 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggT | 1 | 5 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 345 | G345K | GGa | AAa | 4 | 4 | All | 0.000001 |
ORF1ab/nsp12 | 345 | G345W | GgA | TgG | 4 | 4 | All | 0.000001 |
ORF1ab/nsp12 | 345 | G345S | GgA | AgT | 2 | 4 | All | 0 |
ORF1ab/nsp12 | 345 | G345S | GGa | TCa | 1 | 4 | All | 0 |
ORF1ab/nsp12 | 345 | G345S | GGA | TCG | 1 | 4 | All | 0 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 3 | 4 | AY.102 | 0.00008 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggC | 1 | 4 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 3 | 4 | AY.20 | 0.000117 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggT | 1 | 4 | AY.20 | 0.000039 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 4 | 4 | B.1.1.159 | 0.018692 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 4 | 4 | B.1.1.523 | 0.00625 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 3 | 3 | 0.166667 | |
ORF1ab/nsp12 | 345 | G345W | GgA | TgG | 3 | 3 | 0.166667 | |
ORF1ab/nsp12 | 345 | G345T | GGa | ACa | 3 | 3 | All | 0.000001 |
ORF1ab/nsp12 | 345 | G345C | GgA | TgC | 3 | 3 | All | 0.000001 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 2 | 3 | AY.67 | 0.000929 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggT | 1 | 3 | AY.67 | 0.000464 |
ORF1ab/nsp12 | 345 | G345del2 | GGa | --a | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp12 | 345 | G345del2 | gGA | g-- | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp12 | 345 | G345V | gGa | gTa | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 3 | 3 | B.1.177.83 | 0.004444 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 3 | 3 | B.1.367 | 0.002377 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 2 | 3 | B.1.526 | 0.000047 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggC | 1 | 3 | B.1.526 | 0.000024 |
ORF1ab/nsp12 | 345 | G345E | gGa | gAa | 3 | 3 | B.1.582 | 0.001472 |
ORF1ab/nsp12 | 345 | G345V | gGa | gTa | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp12 | 345 | G345E | gGa | gAa | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp12 | 345 | G345C | GgA | TgC | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 345 | G345del1 | ggA | gg- | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 345 | G345G | ggA | ggC | 2 | 2 | A.29 | 0.010638 |
ORF1ab/nsp12 | 345 | G345L | GGa | TTa | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 2 | AY.39.1 | 0.00004 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggC | 1 | 2 | AY.39.1 | 0.00004 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp12 | 345 | G345del1 | GGA | -AG | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 345 | G345R | GgA | CgG | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp12 | 345 | G345R | Gga | Aga | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp12 | 345 | G345K | GGa | AAa | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp12 | 345 | G345R | Gga | Aga | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 345 | G345X | Gga | Tga | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 345 | G345del2 | gGA | g-- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 345 | G345del2 | GGa | --a | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 345 | G345R | GgA | AgG | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 345 | G345R | Gga | Aga | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp12 | 345 | G345X | Gga | Tga | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 2 | 2 | B.1.413 | 0.008511 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 2 | 2 | B.1.604 | 0.034483 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp12 | 345 | G345R | Gga | Aga | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp12 | 345 | G345R | Gga | Aga | 1 | 2 | P.2 | 0.000187 |
ORF1ab/nsp12 | 345 | G345R | GgA | AgG | 1 | 2 | P.2 | 0.000187 |
ORF1ab/nsp12 | 345 | G345X | Gga | Tga | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | AE.2 | 0.058824 |
ORF1ab/nsp12 | 345 | G345E | gGa | gAa | 1 | 1 | AE.3 | 0.032258 |
ORF1ab/nsp12 | 345 | G345A | gGa | gCa | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 345 | G345Y | GGA | TAC | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 345 | G345I | GGa | ATa | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 345 | G345D | gGA | gAT | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 345 | G345T | GGa | ACa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggC | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 345 | G345del2 | GGa | --a | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp12 | 345 | G345V | gGa | gTa | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp12 | 345 | G345R | Gga | Aga | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 345 | G345del2 | GGa | --a | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 345 | G345L | GGa | TTa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 345 | G345A | gGa | gCa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 345 | G345I | GGa | ATa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp12 | 345 | G345del1 | Gga | -ga | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggC | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 345 | G345T | GGa | ACa | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 345 | G345del2 | gGA | g-- | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp12 | 345 | G345S | GgA | AgT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 345 | G345L | GGa | TTa | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp12 | 345 | G345del1 | Gga | -ga | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 345 | G345V | gGA | gTG | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 345 | G345E | gGa | gAa | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 345 | G345R | Gga | Aga | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 345 | G345V | gGa | gTa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 345 | G345K | GGa | AAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 345 | G345D | gGA | gAT | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 345 | G345E | gGa | gAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 345 | G345Y | GGA | TAC | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 345 | G345V | gGa | gTa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 345 | G345E | gGA | gAG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 345 | G345del2 | gGA | g-- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 345 | G345R | Gga | Aga | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 345 | G345del1 | ggA | gg- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp12 | 345 | G345X | Gga | Tga | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | B.1.1.288 | 0.001916 |
ORF1ab/nsp12 | 345 | G345V | gGA | gTG | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp12 | 345 | G345C | GgA | TgC | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 345 | G345del1 | ggA | gg- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 345 | G345W | GgA | TgG | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 345 | G345X | Gga | Tga | 1 | 1 | B.1.160.29 | 0.004219 |
ORF1ab/nsp12 | 345 | G345S | GGA | TCG | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 345 | G345V | gGa | gTa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp12 | 345 | G345del1 | GGA | -AG | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | B.1.195 | 0.005025 |
ORF1ab/nsp12 | 345 | G345X | Gga | Tga | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | B.1.313 | 0.006579 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 345 | G345T | GGa | ACa | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp12 | 345 | G345X | Gga | Tga | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp12 | 345 | G345del1 | GGA | -AG | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | B.1.483 | 0.111111 |
ORF1ab/nsp12 | 345 | G345V | gGA | gTT | 1 | 1 | B.1.515 | 0.014493 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp12 | 345 | G345S | GgA | AgT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp12 | 345 | G345V | gGa | gTa | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 345 | G345S | GGa | TCa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 345 | G345X | Gga | Tga | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp12 | 345 | G345V | gGa | gTa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp12 | 345 | G345X | Gga | Tga | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 345 | G345V | gGa | gTa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp12 | 345 | G345X | Gga | Tga | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp12 | 345 | G345del | GGA | --- | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp12 | 345 | G345E | gGa | gAa | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp12 | 345 | G345K | GGa | AAa | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp12 | 345 | G345V | gGa | gTa | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp12 | 345 | G345E | gGa | gAa | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp12 | 345 | G345G | ggA | ggG | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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