CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 345

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12345G345GG4737GsynggAggG16363163030.99633314473-14475
ORF1ab/nsp12345G345GG4737GsynggAggC16363460.0028112214473-14475
ORF1ab/nsp12345G345GG4737GsynggAggT16363140.00085558914473-14475
ORF1ab/nsp12345G345delG4737deldelGGA---120120114473-14475
ORF1ab/nsp12345G345RG4737RnonsynGgaAga18140.77777814473-14475
ORF1ab/nsp12345G345RG4737RnonsynGgAAgG1830.16666714473-14475
ORF1ab/nsp12345G345RG4737RnonsynGgACgG1810.055555614473-14475
ORF1ab/nsp12345G345VG4737VnonsyngGagTa17140.82352914473-14475
ORF1ab/nsp12345G345VG4737VnonsyngGAgTG1720.11764714473-14475
ORF1ab/nsp12345G345VG4737VnonsyngGAgTT1710.058823514473-14475
ORF1ab/nsp12345G345XG4737XnonsynGgaTga1212114473-14475
ORF1ab/nsp12345G345EG4737EnonsyngGagAa12110.91666714473-14475
ORF1ab/nsp12345G345EG4737EnonsyngGAgAG1210.083333314473-14475
ORF1ab/nsp12345G345del2G4737del2delGGa--a1160.54545514473-14475
ORF1ab/nsp12345G345del2G4737del2delgGAg--1150.45454514473-14475
ORF1ab/nsp12345G345del1G4737del1delGGA-AG1040.414473-14475
ORF1ab/nsp12345G345del1G4737del1delggAgg-1040.414473-14475
ORF1ab/nsp12345G345del1G4737del1delGga-ga1020.214473-14475
ORF1ab/nsp12345G345KG4737KnonsynGGaAAa44114473-14475
ORF1ab/nsp12345G345WG4737WnonsynGgATgG44114473-14475
ORF1ab/nsp12345G345SG4737SnonsynGgAAgT420.514473-14475
ORF1ab/nsp12345G345SG4737SnonsynGGATCG410.2514473-14475
ORF1ab/nsp12345G345SG4737SnonsynGGaTCa410.2514473-14475
ORF1ab/nsp12345G345TG4737TnonsynGGaACa33114473-14475
ORF1ab/nsp12345G345CG4737CnonsynGgATgC33114473-14475
ORF1ab/nsp12345G345LG4737LnonsynGGaTTa22114473-14475
ORF1ab/nsp12345G345AG4737AnonsyngGagCa11114473-14475
ORF1ab/nsp12345G345YG4737YnonsynGGATAC11114473-14475
ORF1ab/nsp12345G345DG4737DnonsyngGAgAT11114473-14475
ORF1ab/nsp12345G345IG4737InonsynGGaATa11114473-14475

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12345G345GggAggG1630316363All0.003118
ORF1ab/nsp12345G345GggAggC4616363All0.000009
ORF1ab/nsp12345G345GggAggT1416363All0.000003
ORF1ab/nsp12345G345GggAggG1544015440AY.270.999288
ORF1ab/nsp12345G345GggAggG148163B.1.1.70.000132
ORF1ab/nsp12345G345GggAggC12163B.1.1.70.000011
ORF1ab/nsp12345G345GggAggT3163B.1.1.70.000003
ORF1ab/nsp12345G345GggAggG119121B.1.617.20.000448
ORF1ab/nsp12345G345GggAggC2121B.1.617.20.000008
ORF1ab/nsp12345G345delGGA---120120All0.000023
ORF1ab/nsp12345G345GggAggG113115AY.40.000176
ORF1ab/nsp12345G345GggAggC2115AY.40.000003
ORF1ab/nsp12345G345GggAggG6767AY.370.021176
ORF1ab/nsp12345G345GggAggG5256AY.430.00023
ORF1ab/nsp12345G345GggAggC356AY.430.000013
ORF1ab/nsp12345G345GggAggT156AY.430.000004
ORF1ab/nsp12345G345delGGA---5353B.1.1.70.000047
ORF1ab/nsp12345G345GggAggG4043AY.1030.000248
ORF1ab/nsp12345G345GggAggC243AY.1030.000012
ORF1ab/nsp12345G345GggAggT143AY.1030.000006
ORF1ab/nsp12345G345GggAggG4040B.1.4290.000941
ORF1ab/nsp12345G345GggAggG2427AY.750.001345
ORF1ab/nsp12345G345GggAggC227AY.750.000112
ORF1ab/nsp12345G345GggAggT127AY.750.000056
ORF1ab/nsp12345G345GggAggG1919AY.740.002197
ORF1ab/nsp12345G345RGgaAga1418All0.000003
ORF1ab/nsp12345G345RGgAAgG318All0.000001
ORF1ab/nsp12345G345RGgACgG118All0
ORF1ab/nsp12345G345VgGagTa1417All0.000003
ORF1ab/nsp12345G345VgGAgTG217All0
ORF1ab/nsp12345G345VgGAgTT117All0
ORF1ab/nsp12345G345GggAggG1617AY.470.000498
ORF1ab/nsp12345G345GggAggC117AY.470.000031
ORF1ab/nsp12345G345GggAggG1616AY.160.006074
ORF1ab/nsp12345G345GggAggG1515AY.880.013263
ORF1ab/nsp12345G345GggAggG714AY.440.000043
ORF1ab/nsp12345G345GggAggC614AY.440.000037
ORF1ab/nsp12345G345GggAggT114AY.440.000006
ORF1ab/nsp12345G345XGgaTga1212All0.000002
ORF1ab/nsp12345G345EgGagAa1112All0.000002
ORF1ab/nsp12345G345EgGAgAG112All0
ORF1ab/nsp12345G345GggAggG1112AY.250.000066
ORF1ab/nsp12345G345GggAggC112AY.250.000006
ORF1ab/nsp12345G345GggAggG1212AY.75.10.002164
ORF1ab/nsp12345G345del2GGa--a611All0.000001
ORF1ab/nsp12345G345del2gGAg--511All0.000001
ORF1ab/nsp12345G345del1GGA-AG410All0.000001
ORF1ab/nsp12345G345del1ggAgg-410All0.000001
ORF1ab/nsp12345G345del1Gga-ga210All0
ORF1ab/nsp12345G345GggAggG910B.10.000082
ORF1ab/nsp12345G345GggAggT110B.10.000009
ORF1ab/nsp12345G345GggAggG99AY.260.000255
ORF1ab/nsp12345G345GggAggG79AY.50.000145
ORF1ab/nsp12345G345GggAggC29AY.50.000041
ORF1ab/nsp12345G345GggAggG88AY.390.000198
ORF1ab/nsp12345G345GggAggG67AY.1190.000212
ORF1ab/nsp12345G345GggAggT17AY.1190.000035
ORF1ab/nsp12345G345GggAggG77AY.280.013233
ORF1ab/nsp12345G345delGGA---66B.10.000055
ORF1ab/nsp12345G345GggAggG66B.1.6370.000438
ORF1ab/nsp12345G345GggAggG46P.10.000063
ORF1ab/nsp12345G345GggAggC26P.10.000032
ORF1ab/nsp12345G345GggAggG55AY.620.002179
ORF1ab/nsp12345G345GggAggG45AY.90.00027
ORF1ab/nsp12345G345GggAggT15AY.90.000068
ORF1ab/nsp12345G345RGgaAga45B.1.10.000073
ORF1ab/nsp12345G345RGgAAgG15B.1.10.000018
ORF1ab/nsp12345G345GggAggG55B.1.1.5190.000199
ORF1ab/nsp12345G345delGGA---55B.1.1770.000066
ORF1ab/nsp12345G345GggAggG45B.1.20.000035
ORF1ab/nsp12345G345GggAggT15B.1.20.000009
ORF1ab/nsp12345G345KGGaAAa44All0.000001
ORF1ab/nsp12345G345WGgATgG44All0.000001
ORF1ab/nsp12345G345SGgAAgT24All0
ORF1ab/nsp12345G345SGGaTCa14All0
ORF1ab/nsp12345G345SGGATCG14All0
ORF1ab/nsp12345G345GggAggG34AY.1020.00008
ORF1ab/nsp12345G345GggAggC14AY.1020.000027
ORF1ab/nsp12345G345GggAggG34AY.200.000117
ORF1ab/nsp12345G345GggAggT14AY.200.000039
ORF1ab/nsp12345G345delGGA---44AY.40.000006
ORF1ab/nsp12345G345GggAggG44B.1.1.1590.018692
ORF1ab/nsp12345G345GggAggG44B.1.1.5230.00625
ORF1ab/nsp12345G345GggAggG330.166667
ORF1ab/nsp12345G345WGgATgG330.166667
ORF1ab/nsp12345G345TGGaACa33All0.000001
ORF1ab/nsp12345G345CGgATgC33All0.000001
ORF1ab/nsp12345G345GggAggG23AY.670.000929
ORF1ab/nsp12345G345GggAggT13AY.670.000464
ORF1ab/nsp12345G345del2GGa--a23B.10.000018
ORF1ab/nsp12345G345del2gGAg--13B.10.000009
ORF1ab/nsp12345G345delGGA---33B.1.10.000054
ORF1ab/nsp12345G345VgGagTa33B.1.1.70.000003
ORF1ab/nsp12345G345GggAggG33B.1.1600.000094
ORF1ab/nsp12345G345delGGA---33B.1.177.830.004444
ORF1ab/nsp12345G345delGGA---33B.1.20.000026
ORF1ab/nsp12345G345GggAggG33B.1.3510.000089
ORF1ab/nsp12345G345delGGA---33B.1.3670.002377
ORF1ab/nsp12345G345GggAggG23B.1.5260.000047
ORF1ab/nsp12345G345GggAggC13B.1.5260.000024
ORF1ab/nsp12345G345EgGagAa33B.1.5820.001472
ORF1ab/nsp12345G345VgGagTa33P.10.000047
ORF1ab/nsp12345G345EgGagAa33P.10.000047
ORF1ab/nsp12345G345GggAggG33Q.10.000379
ORF1ab/nsp12345G345CGgATgC220.111111
ORF1ab/nsp12345G345del1ggAgg-220.111111
ORF1ab/nsp12345G345GggAggC22A.290.010638
ORF1ab/nsp12345G345LGGaTTa22All0
ORF1ab/nsp12345G345GggAggG22AY.1000.000092
ORF1ab/nsp12345G345GggAggG22AY.1210.000271
ORF1ab/nsp12345G345GggAggG22AY.130.000322
ORF1ab/nsp12345G345GggAggG12AY.39.10.00004
ORF1ab/nsp12345G345GggAggC12AY.39.10.00004
ORF1ab/nsp12345G345delGGA---22AY.4.50.000215
ORF1ab/nsp12345G345delGGA---22AY.430.000009
ORF1ab/nsp12345G345delGGA---22AY.440.000012
ORF1ab/nsp12345G345GggAggG22AY.70.000392
ORF1ab/nsp12345G345delGGA---22AY.9.20.000073
ORF1ab/nsp12345G345del1GGA-AG22B.10.000018
ORF1ab/nsp12345G345RGgACgG12B.10.000009
ORF1ab/nsp12345G345RGgaAga12B.10.000009
ORF1ab/nsp12345G345GggAggG22B.1.10.000036
ORF1ab/nsp12345G345GggAggG22B.1.1.2160.001781
ORF1ab/nsp12345G345KGGaAAa22B.1.1.280.000622
ORF1ab/nsp12345G345RGgaAga22B.1.1.70.000002
ORF1ab/nsp12345G345XGgaTga22B.1.1.70.000002
ORF1ab/nsp12345G345del2gGAg--22B.1.1.70.000002
ORF1ab/nsp12345G345GggAggG22B.1.1770.000026
ORF1ab/nsp12345G345del2GGa--a22B.1.1770.000026
ORF1ab/nsp12345G345RGgAAgG12B.1.1770.000013
ORF1ab/nsp12345G345RGgaAga12B.1.1770.000013
ORF1ab/nsp12345G345delGGA---22B.1.177.40.000422
ORF1ab/nsp12345G345GggAggG22B.1.177.870.001456
ORF1ab/nsp12345G345XGgaTga22B.1.20.000018
ORF1ab/nsp12345G345GggAggG22B.1.258.170.000208
ORF1ab/nsp12345G345GggAggG22B.1.3110.000549
ORF1ab/nsp12345G345GggAggG22B.1.4130.008511
ORF1ab/nsp12345G345GggAggG22B.1.6040.034483
ORF1ab/nsp12345G345GggAggG22C.360.001821
ORF1ab/nsp12345G345RGgaAga22P.10.000032
ORF1ab/nsp12345G345RGgaAga12P.20.000187
ORF1ab/nsp12345G345RGgAAgG12P.20.000187
ORF1ab/nsp12345G345XGgaTga110.055556
ORF1ab/nsp12345G345delGGA---11AE.20.058824
ORF1ab/nsp12345G345EgGagAa11AE.30.032258
ORF1ab/nsp12345G345AgGagCa11All0
ORF1ab/nsp12345G345YGGATAC11All0
ORF1ab/nsp12345G345IGGaATa11All0
ORF1ab/nsp12345G345DgGAgAT11All0
ORF1ab/nsp12345G345delGGA---11AY.1020.000027
ORF1ab/nsp12345G345TGGaACa11AY.1030.000006
ORF1ab/nsp12345G345GggAggG11AY.1050.000643
ORF1ab/nsp12345G345delGGA---11AY.1070.000466
ORF1ab/nsp12345G345delGGA---11AY.1110.000183
ORF1ab/nsp12345G345GggAggC11AY.1110.000183
ORF1ab/nsp12345G345del2GGa--a11AY.1170.000085
ORF1ab/nsp12345G345GggAggG11AY.1170.000085
ORF1ab/nsp12345G345GggAggG11AY.120.000316
ORF1ab/nsp12345G345VgGagTa11AY.240.000431
ORF1ab/nsp12345G345delGGA---11AY.260.000028
ORF1ab/nsp12345G345delGGA---11AY.30.00001
ORF1ab/nsp12345G345GggAggG11AY.330.000067
ORF1ab/nsp12345G345GggAggG11AY.360.000148
ORF1ab/nsp12345G345RGgaAga11AY.40.000002
ORF1ab/nsp12345G345del2GGa--a11AY.430.000004
ORF1ab/nsp12345G345LGGaTTa11AY.430.000004
ORF1ab/nsp12345G345AgGagCa11AY.440.000006
ORF1ab/nsp12345G345IGGaATa11AY.440.000006
ORF1ab/nsp12345G345GggAggC11AY.450.000122
ORF1ab/nsp12345G345GggAggG11AY.460.000104
ORF1ab/nsp12345G345GggAggG11AY.46.20.000635
ORF1ab/nsp12345G345del1Gga-ga11AY.46.60.000072
ORF1ab/nsp12345G345GggAggC11AY.46.60.000072
ORF1ab/nsp12345G345delGGA---11AY.46.60.000072
ORF1ab/nsp12345G345GggAggG11AY.520.000814
ORF1ab/nsp12345G345GggAggG11AY.530.000288
ORF1ab/nsp12345G345TGGaACa11AY.550.000917
ORF1ab/nsp12345G345GggAggG11AY.610.000105
ORF1ab/nsp12345G345del2gGAg--11AY.650.000533
ORF1ab/nsp12345G345delGGA---11AY.710.000475
ORF1ab/nsp12345G345delGGA---11AY.720.001361
ORF1ab/nsp12345G345SGgAAgT11AY.750.000056
ORF1ab/nsp12345G345LGGaTTa11AY.760.004831
ORF1ab/nsp12345G345GggAggT11AY.840.000437
ORF1ab/nsp12345G345GggAggC11AY.9.20.000037
ORF1ab/nsp12345G345GggAggG11AY.930.000273
ORF1ab/nsp12345G345del1Gga-ga11AY.950.000761
ORF1ab/nsp12345G345GggAggG11AY.98.10.000048
ORF1ab/nsp12345G345VgGAgTG11AY.990.001049
ORF1ab/nsp12345G345EgGagAa11AY.990.001049
ORF1ab/nsp12345G345RGgaAga11AY.99.20.000092
ORF1ab/nsp12345G345VgGagTa11B.10.000009
ORF1ab/nsp12345G345KGGaAAa11B.10.000009
ORF1ab/nsp12345G345DgGAgAT11B.10.000009
ORF1ab/nsp12345G345EgGagAa11B.10.000009
ORF1ab/nsp12345G345YGGATAC11B.10.000009
ORF1ab/nsp12345G345VgGagTa11B.1.10.000018
ORF1ab/nsp12345G345EgGAgAG11B.1.10.000018
ORF1ab/nsp12345G345del2gGAg--11B.1.10.000018
ORF1ab/nsp12345G345RGgaAga11B.1.1.10.000327
ORF1ab/nsp12345G345del1ggAgg-11B.1.1.1390.022727
ORF1ab/nsp12345G345XGgaTga11B.1.1.1700.001247
ORF1ab/nsp12345G345GggAggG11B.1.1.2140.000055
ORF1ab/nsp12345G345delGGA---11B.1.1.2210.010101
ORF1ab/nsp12345G345delGGA---11B.1.1.2840.000107
ORF1ab/nsp12345G345delGGA---11B.1.1.2880.001916
ORF1ab/nsp12345G345VgGAgTG11B.1.1.3060.000438
ORF1ab/nsp12345G345delGGA---11B.1.1.3120.001912
ORF1ab/nsp12345G345delGGA---11B.1.1.370.000193
ORF1ab/nsp12345G345GggAggG11B.1.1.4160.000905
ORF1ab/nsp12345G345GggAggG11B.1.1.630.000386
ORF1ab/nsp12345G345CGgATgC11B.1.1.70.000001
ORF1ab/nsp12345G345del1ggAgg-11B.1.1.70.000001
ORF1ab/nsp12345G345GggAggG11B.1.1310.008772
ORF1ab/nsp12345G345delGGA---11B.1.1600.000031
ORF1ab/nsp12345G345WGgATgG11B.1.1600.000031
ORF1ab/nsp12345G345XGgaTga11B.1.160.290.004219
ORF1ab/nsp12345G345SGGATCG11B.1.1770.000013
ORF1ab/nsp12345G345VgGagTa11B.1.1770.000013
ORF1ab/nsp12345G345GggAggG11B.1.177.210.000076
ORF1ab/nsp12345G345GggAggG11B.1.177.350.000691
ORF1ab/nsp12345G345delGGA---11B.1.177.530.002392
ORF1ab/nsp12345G345del1GGA-AG11B.1.177.530.002392
ORF1ab/nsp12345G345delGGA---11B.1.177.540.000606
ORF1ab/nsp12345G345delGGA---11B.1.177.570.000281
ORF1ab/nsp12345G345delGGA---11B.1.177.760.002494
ORF1ab/nsp12345G345delGGA---11B.1.1950.005025
ORF1ab/nsp12345G345XGgaTga11B.1.2060.000816
ORF1ab/nsp12345G345GggAggG11B.1.2340.000132
ORF1ab/nsp12345G345GggAggC11B.1.2430.00007
ORF1ab/nsp12345G345GggAggG11B.1.3130.006579
ORF1ab/nsp12345G345delGGA---11B.1.351.30.000876
ORF1ab/nsp12345G345GggAggG11B.1.360.000146
ORF1ab/nsp12345G345TGGaACa11B.1.3620.001541
ORF1ab/nsp12345G345XGgaTga11B.1.3690.000285
ORF1ab/nsp12345G345del1GGA-AG11B.1.4160.001269
ORF1ab/nsp12345G345GggAggG11B.1.4260.001009
ORF1ab/nsp12345G345delGGA---11B.1.4530.003236
ORF1ab/nsp12345G345GggAggG11B.1.4830.111111
ORF1ab/nsp12345G345VgGAgTT11B.1.5150.014493
ORF1ab/nsp12345G345delGGA---11B.1.5170.000427
ORF1ab/nsp12345G345SGgAAgT11B.1.5250.000113
ORF1ab/nsp12345G345GggAggG11B.1.5410.004425
ORF1ab/nsp12345G345delGGA---11B.1.5800.004065
ORF1ab/nsp12345G345GggAggG11B.1.5880.00091
ORF1ab/nsp12345G345VgGagTa11B.1.5950.000261
ORF1ab/nsp12345G345delGGA---11B.1.5960.000087
ORF1ab/nsp12345G345GggAggC11B.1.5960.000087
ORF1ab/nsp12345G345SGGaTCa11B.1.617.10.000129
ORF1ab/nsp12345G345delGGA---11B.1.617.10.000129
ORF1ab/nsp12345G345XGgaTga11B.1.617.20.000004
ORF1ab/nsp12345G345GggAggG11B.1.6190.000871
ORF1ab/nsp12345G345delGGA---11B.1.6210.000089
ORF1ab/nsp12345G345delGGA---11B.1.6370.000073
ORF1ab/nsp12345G345VgGagTa11B.60.00091
ORF1ab/nsp12345G345GggAggG11C.350.000774
ORF1ab/nsp12345G345delGGA---11C.360.000911
ORF1ab/nsp12345G345GggAggG11C.370.000116
ORF1ab/nsp12345G345GggAggG11C.390.018868
ORF1ab/nsp12345G345XGgaTga11D.20.000075
ORF1ab/nsp12345G345VgGagTa11D.20.000075
ORF1ab/nsp12345G345GggAggG11N.50.001767
ORF1ab/nsp12345G345XGgaTga11P.10.000016
ORF1ab/nsp12345G345delGGA---11P.1.100.000269
ORF1ab/nsp12345G345EgGagAa11P.1.140.000048
ORF1ab/nsp12345G345GggAggG11P.1.140.000048
ORF1ab/nsp12345G345GggAggG11P.1.70.000319
ORF1ab/nsp12345G345KGGaAAa11P.20.000187
ORF1ab/nsp12345G345VgGagTa11P.20.000187
ORF1ab/nsp12345G345EgGagAa11P.20.000187
ORF1ab/nsp12345G345GggAggG11R.10.00009