CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 321

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12321F321FF4713FsynttCttT41474147114401-14403
ORF1ab/nsp12321F321delF4713deldelTTC---141141114401-14403
ORF1ab/nsp12321F321LF4713LnonsynTtcCtc97650.67010314401-14403
ORF1ab/nsp12321F321LF4713LnonsynttCttA97270.27835114401-14403
ORF1ab/nsp12321F321LF4713LnonsynttCttG9730.030927814401-14403
ORF1ab/nsp12321F321LF4713LnonsynTtCCtT9720.020618614401-14403
ORF1ab/nsp12321F321YF4713YnonsyntTctAc1010114401-14403
ORF1ab/nsp12321F321VF4713VnonsynTtcGtc1080.814401-14403
ORF1ab/nsp12321F321VF4713VnonsynTtCGtA1020.214401-14403
ORF1ab/nsp12321F321SF4713SnonsyntTctCc980.88888914401-14403
ORF1ab/nsp12321F321SF4713SnonsyntTCtCT910.11111114401-14403
ORF1ab/nsp12321F321del1F4713del1delttCtt-750.71428614401-14403
ORF1ab/nsp12321F321del1F4713del1delTtc-tc720.28571414401-14403
ORF1ab/nsp12321F321CF4713CnonsyntTctGc540.814401-14403
ORF1ab/nsp12321F321CF4713CnonsyntTCtGT510.214401-14403
ORF1ab/nsp12321F321IF4713InonsynTtCAtA420.514401-14403
ORF1ab/nsp12321F321IF4713InonsynTtcAtc420.514401-14403
ORF1ab/nsp12321F321XF4713XnonsyntTCtAA33114401-14403
ORF1ab/nsp12321F321HF4713HnonsynTTCCAT320.66666714401-14403
ORF1ab/nsp12321F321HF4713HnonsynTTcCAc310.33333314401-14403
ORF1ab/nsp12321F321DF4713DnonsynTTcGAc22114401-14403
ORF1ab/nsp12321F321QF4713QnonsynTTCCAA22114401-14403
ORF1ab/nsp12321F321EF4713EnonsynTTCGAA22114401-14403
ORF1ab/nsp12321F321PF4713PnonsynTTCCCT22114401-14403
ORF1ab/nsp12321F321del2F4713del2delTTc--c210.514401-14403
ORF1ab/nsp12321F321del2F4713del2deltTCt--210.514401-14403

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12321F321FttCttT41474147All0.000793
ORF1ab/nsp12321F321FttCttT15591559B.1.619.11
ORF1ab/nsp12321F321FttCttT11151115B.1.6190.971254
ORF1ab/nsp12321F321FttCttT584584B.1.5260.013727
ORF1ab/nsp12321F321FttCttT341341AY.1030.002117
ORF1ab/nsp12321F321delTTC---141141All0.000027
ORF1ab/nsp12321F321LTtcCtc6597All0.000012
ORF1ab/nsp12321F321LttCttA2797All0.000005
ORF1ab/nsp12321F321LttCttG397All0.000001
ORF1ab/nsp12321F321LTtCCtT297All0
ORF1ab/nsp12321F321FttCttT9797B.1.1.70.000087
ORF1ab/nsp12321F321delTTC---7474B.1.1.70.000066
ORF1ab/nsp12321F321FttCttT4646B.1.617.20.000173
ORF1ab/nsp12321F321FttCttT3737AY.1130.005268
ORF1ab/nsp12321F321FttCttT3636AD.20.007883
ORF1ab/nsp12321F321FttCttT3333AY.1210.004465
ORF1ab/nsp12321F321FttCttT2424B.10.00022
ORF1ab/nsp12321F321FttCttT1919AY.40.00003
ORF1ab/nsp12321F321FttCttT1818B.1.20.000158
ORF1ab/nsp12321F321LTtcCtc1416B.1.1.70.000013
ORF1ab/nsp12321F321LttCttA116B.1.1.70.000001
ORF1ab/nsp12321F321LttCttG116B.1.1.70.000001
ORF1ab/nsp12321F321FttCttT1616B.1.258.70.030593
ORF1ab/nsp12321F321FttCttT1616P.10.000252
ORF1ab/nsp12321F321FttCttT1515B.1.617.10.001934
ORF1ab/nsp12321F321FttCttT1414B.1.1.2140.000776
ORF1ab/nsp12321F321FttCttT1212B.1.3200.014944
ORF1ab/nsp12321F321LTtcCtc1212C.360.010929
ORF1ab/nsp12321F321LTtcCtc811B.10.000073
ORF1ab/nsp12321F321LttCttA311B.10.000027
ORF1ab/nsp12321F321YtTctAc1010All0.000002
ORF1ab/nsp12321F321VTtcGtc810All0.000002
ORF1ab/nsp12321F321VTtCGtA210All0
ORF1ab/nsp12321F321FttCttT1010AY.30.000099
ORF1ab/nsp12321F321delTTC---1010AY.40.000016
ORF1ab/nsp12321F321FttCttT1010B.1.6210.000885
ORF1ab/nsp12321F321StTctCc89All0.000002
ORF1ab/nsp12321F321StTCtCT19All0
ORF1ab/nsp12321F321LttCttA89B.1.20.00007
ORF1ab/nsp12321F321LTtcCtc19B.1.20.000009
ORF1ab/nsp12321F321FttCttT99B.1.2430.000626
ORF1ab/nsp12321F321del1ttCtt-57All0.000001
ORF1ab/nsp12321F321del1Ttc-tc27All0
ORF1ab/nsp12321F321delTTC---77AY.430.000031
ORF1ab/nsp12321F321FttCttT77B.1.10.000127
ORF1ab/nsp12321F321LTtcCtc77B.1.9.40.042945
ORF1ab/nsp12321F321FttCttT66AY.250.000036
ORF1ab/nsp12321F321FttCttT66AY.260.00017
ORF1ab/nsp12321F321FttCttT66AY.430.000027
ORF1ab/nsp12321F321FttCttT66AY.440.000037
ORF1ab/nsp12321F321CtTctGc45All0.000001
ORF1ab/nsp12321F321CtTCtGT15All0
ORF1ab/nsp12321F321delTTC---55AY.4.50.000537
ORF1ab/nsp12321F321FttCttT55AY.470.000156
ORF1ab/nsp12321F321FttCttT55B.1.221.30.004167
ORF1ab/nsp12321F321FttCttT55B.1.5960.000436
ORF1ab/nsp12321F321LTtcCtc55B.1.617.20.000019
ORF1ab/nsp12321F321LTtCCtT240.111111
ORF1ab/nsp12321F321VTtCGtA240.111111
ORF1ab/nsp12321F321LttCttA240.111111
ORF1ab/nsp12321F321VTtcGtc240.111111
ORF1ab/nsp12321F321ITtcAtc24All0
ORF1ab/nsp12321F321ITtCAtA24All0
ORF1ab/nsp12321F321LTtcCtc44AY.40.000006
ORF1ab/nsp12321F321FttCttT44B.1.1.1170.038835
ORF1ab/nsp12321F321delTTC---44B.1.1770.000053
ORF1ab/nsp12321F321XtTCtAA33All0.000001
ORF1ab/nsp12321F321HTTCCAT23All0
ORF1ab/nsp12321F321HTTcCAc13All0
ORF1ab/nsp12321F321YtTctAc33AY.1030.000019
ORF1ab/nsp12321F321FttCttT33AY.290.000047
ORF1ab/nsp12321F321LttCttA33AY.30.00003
ORF1ab/nsp12321F321FttCttT33AY.4.20.000065
ORF1ab/nsp12321F321FttCttT33AY.4.50.000322
ORF1ab/nsp12321F321YtTctAc33B.1.1.70.000003
ORF1ab/nsp12321F321FttCttT33B.1.160.300.008929
ORF1ab/nsp12321F321LttCttA33B.1.3510.000089
ORF1ab/nsp12321F321delTTC---33B.1.3670.002377
ORF1ab/nsp12321F321FttCttT33B.1.5250.000339
ORF1ab/nsp12321F321FttCttT33P.1.140.000143
ORF1ab/nsp12321F321HTTCCAT220.111111
ORF1ab/nsp12321F321QTTCCAA220.111111
ORF1ab/nsp12321F321XtTCtAA220.111111
ORF1ab/nsp12321F321PTTCCCT220.111111
ORF1ab/nsp12321F321YtTctAc220.111111
ORF1ab/nsp12321F321DTTcGAc220.111111
ORF1ab/nsp12321F321ITtCAtA220.111111
ORF1ab/nsp12321F321ETTCGAA220.111111
ORF1ab/nsp12321F321LttCttA22A.23.10.001408
ORF1ab/nsp12321F321PTTCCCT22All0
ORF1ab/nsp12321F321ETTCGAA22All0
ORF1ab/nsp12321F321QTTCCAA22All0
ORF1ab/nsp12321F321DTTcGAc22All0
ORF1ab/nsp12321F321del2tTCt--12All0
ORF1ab/nsp12321F321del2TTc--c12All0
ORF1ab/nsp12321F321FttCttT22AY.1020.000053
ORF1ab/nsp12321F321LTtcCtc22AY.1200.000074
ORF1ab/nsp12321F321FttCttT22AY.29.10.000441
ORF1ab/nsp12321F321FttCttT22AY.330.000134
ORF1ab/nsp12321F321FttCttT22AY.390.000049
ORF1ab/nsp12321F321StTctCc22AY.46.40.000329
ORF1ab/nsp12321F321FttCttT22AY.98.10.000097
ORF1ab/nsp12321F321delTTC---22B.10.000018
ORF1ab/nsp12321F321VTtcGtc22B.1.10.000036
ORF1ab/nsp12321F321FttCttT22B.1.1.2300.018349
ORF1ab/nsp12321F321FttCttT22B.1.1.3060.000877
ORF1ab/nsp12321F321FttCttT22B.1.1.3980.006452
ORF1ab/nsp12321F321VTtcGtc22B.1.1.70.000002
ORF1ab/nsp12321F321del1ttCtt-22B.1.1.70.000002
ORF1ab/nsp12321F321CtTCtGT12B.1.1.70.000001
ORF1ab/nsp12321F321CtTctGc12B.1.1.70.000001
ORF1ab/nsp12321F321del2TTc--c12B.1.1.70.000001
ORF1ab/nsp12321F321del2tTCt--12B.1.1.70.000001
ORF1ab/nsp12321F321FttCttT22B.1.1770.000026
ORF1ab/nsp12321F321delTTC---22B.1.177.180.00232
ORF1ab/nsp12321F321FttCttT22B.1.177.860.000367
ORF1ab/nsp12321F321delTTC---22B.1.20.000018
ORF1ab/nsp12321F321LTtcCtc22B.1.4250.005988
ORF1ab/nsp12321F321CtTctGc22B.1.4290.000047
ORF1ab/nsp12321F321FttCttT22B.1.5170.000854
ORF1ab/nsp12321F321delTTC---22B.1.6210.000177
ORF1ab/nsp12321F321del1Ttc-tc22B.1.6270.00404
ORF1ab/nsp12321F321FttCttT22P.1.120.000968
ORF1ab/nsp12321F321LTtcCtc12P.20.000187
ORF1ab/nsp12321F321LttCttG12P.20.000187
ORF1ab/nsp12321F321FttCttT22U.10.025641
ORF1ab/nsp12321F321LTtcCtc11AY.1030.000006
ORF1ab/nsp12321F321ITtcAtc11AY.1030.000006
ORF1ab/nsp12321F321delTTC---11AY.1110.000183
ORF1ab/nsp12321F321delTTC---11AY.1170.000085
ORF1ab/nsp12321F321FttCttT11AY.1180.000063
ORF1ab/nsp12321F321FttCttT11AY.1190.000035
ORF1ab/nsp12321F321CtTctGc11AY.1190.000035
ORF1ab/nsp12321F321delTTC---11AY.190.00114
ORF1ab/nsp12321F321LTtcCtc11AY.200.000039
ORF1ab/nsp12321F321FttCttT11AY.200.000039
ORF1ab/nsp12321F321VTtcGtc11AY.250.000006
ORF1ab/nsp12321F321delTTC---11AY.250.000006
ORF1ab/nsp12321F321delTTC---11AY.30.00001
ORF1ab/nsp12321F321YtTctAc11AY.30.00001
ORF1ab/nsp12321F321FttCttT11AY.3.10.000085
ORF1ab/nsp12321F321FttCttT11AY.360.000148
ORF1ab/nsp12321F321FttCttT11AY.370.000316
ORF1ab/nsp12321F321StTctCc11AY.40.000002
ORF1ab/nsp12321F321FttCttT11AY.420.00004
ORF1ab/nsp12321F321LTtcCtc11AY.430.000004
ORF1ab/nsp12321F321HTTcCAc11AY.440.000006
ORF1ab/nsp12321F321FttCttT11AY.450.000122
ORF1ab/nsp12321F321FttCttT11AY.46.20.000635
ORF1ab/nsp12321F321delTTC---11AY.46.60.000072
ORF1ab/nsp12321F321FttCttT11AY.50.000021
ORF1ab/nsp12321F321delTTC---11AY.520.000814
ORF1ab/nsp12321F321FttCttT11AY.60.000041
ORF1ab/nsp12321F321FttCttT11AY.600.000938
ORF1ab/nsp12321F321LttCttA11AY.610.000105
ORF1ab/nsp12321F321FttCttT11AY.610.000105
ORF1ab/nsp12321F321delTTC---11AY.670.000464
ORF1ab/nsp12321F321LttCttA11AY.670.000464
ORF1ab/nsp12321F321FttCttT11AY.690.000187
ORF1ab/nsp12321F321delTTC---11AY.70.000196
ORF1ab/nsp12321F321delTTC---11AY.710.000475
ORF1ab/nsp12321F321FttCttT11AY.720.001361
ORF1ab/nsp12321F321delTTC---11AY.720.001361
ORF1ab/nsp12321F321FttCttT11AY.750.000056
ORF1ab/nsp12321F321FttCttT11AY.75.10.00018
ORF1ab/nsp12321F321delTTC---11AY.760.004831
ORF1ab/nsp12321F321delTTC---11AY.840.000437
ORF1ab/nsp12321F321delTTC---11AY.850.000427
ORF1ab/nsp12321F321delTTC---11AY.9.20.000037
ORF1ab/nsp12321F321StTCtCT11AY.990.001049
ORF1ab/nsp12321F321StTctCc11B0.000128
ORF1ab/nsp12321F321FttCttT11B0.000128
ORF1ab/nsp12321F321LttCttA11B0.000128
ORF1ab/nsp12321F321ITtcAtc11B.10.000009
ORF1ab/nsp12321F321XtTCtAA11B.1.10.000018
ORF1ab/nsp12321F321YtTctAc11B.1.10.000018
ORF1ab/nsp12321F321del1ttCtt-11B.1.10.000018
ORF1ab/nsp12321F321FttCttT11B.1.1.10.000327
ORF1ab/nsp12321F321FttCttT11B.1.1.1620.029412
ORF1ab/nsp12321F321delTTC---11B.1.1.2210.010101
ORF1ab/nsp12321F321StTctCc11B.1.1.250.000569
ORF1ab/nsp12321F321FttCttT11B.1.1.250.000569
ORF1ab/nsp12321F321FttCttT11B.1.1.2790.001121
ORF1ab/nsp12321F321LTtcCtc11B.1.1.3110.000358
ORF1ab/nsp12321F321delTTC---11B.1.1.3120.001912
ORF1ab/nsp12321F321LTtcCtc11B.1.1.3220.008772
ORF1ab/nsp12321F321FttCttT11B.1.1.370.000193
ORF1ab/nsp12321F321delTTC---11B.1.1.370.000193
ORF1ab/nsp12321F321FttCttT11B.1.1.500.000679
ORF1ab/nsp12321F321FttCttT11B.1.1.5210.005348
ORF1ab/nsp12321F321StTctCc11B.1.1.70.000001
ORF1ab/nsp12321F321LTtcCtc11B.1.1770.000013
ORF1ab/nsp12321F321delTTC---11B.1.177.160.000664
ORF1ab/nsp12321F321FttCttT11B.1.177.160.000664
ORF1ab/nsp12321F321FttCttT11B.1.177.170.000821
ORF1ab/nsp12321F321LttCttA11B.1.177.40.000211
ORF1ab/nsp12321F321FttCttT11B.1.177.520.001757
ORF1ab/nsp12321F321delTTC---11B.1.177.540.000606
ORF1ab/nsp12321F321delTTC---11B.1.177.690.001484
ORF1ab/nsp12321F321FttCttT11B.1.177.730.000566
ORF1ab/nsp12321F321delTTC---11B.1.177.760.002494
ORF1ab/nsp12321F321FttCttT11B.1.177.820.000477
ORF1ab/nsp12321F321FttCttT11B.1.177.870.000728
ORF1ab/nsp12321F321FttCttT11B.1.2210.000071
ORF1ab/nsp12321F321delTTC---11B.1.230.006061
ORF1ab/nsp12321F321StTctCc11B.1.2430.00007
ORF1ab/nsp12321F321StTctCc11B.1.3380.008621
ORF1ab/nsp12321F321FttCttT11B.1.3490.000715
ORF1ab/nsp12321F321delTTC---11B.1.36.170.000494
ORF1ab/nsp12321F321FttCttT11B.1.36.360.000602
ORF1ab/nsp12321F321FttCttT11B.1.3670.000792
ORF1ab/nsp12321F321del1ttCtt-11B.1.3690.000285
ORF1ab/nsp12321F321LTtcCtc11B.1.3990.001934
ORF1ab/nsp12321F321FttCttT11B.1.4290.000024
ORF1ab/nsp12321F321VTtcGtc11B.1.4290.000024
ORF1ab/nsp12321F321delTTC---11B.1.4530.003236
ORF1ab/nsp12321F321FttCttT11B.1.4970.000315
ORF1ab/nsp12321F321delTTC---11B.1.5250.000113
ORF1ab/nsp12321F321del1ttCtt-11B.1.5960.000087
ORF1ab/nsp12321F321delTTC---11B.1.617.10.000129
ORF1ab/nsp12321F321LttCttG11B.1.6360.006711
ORF1ab/nsp12321F321LTtcCtc11B.1.90.006173
ORF1ab/nsp12321F321FttCttT11B.310.003731
ORF1ab/nsp12321F321LttCttA11B.60.00091
ORF1ab/nsp12321F321FttCttT11D.20.000075
ORF1ab/nsp12321F321LTtcCtc11P.10.000016
ORF1ab/nsp12321F321delTTC---11P.1.10.000318
ORF1ab/nsp12321F321FttCttT11P.1.10.000318
ORF1ab/nsp12321F321delTTC---11P.1.100.000269
ORF1ab/nsp12321F321FttCttT11P.1.110.010204
ORF1ab/nsp12321F321FttCttT11P.1.150.000232
ORF1ab/nsp12321F321delTTC---11Q.20.000613