CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 32

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1232Y32YY4424YsyntaCtaT3010830108113534-13536
ORF1ab/nsp1232Y32HY4424HnonsynTacCac322322113534-13536
ORF1ab/nsp1232Y32CY4424CnonsyntActGc8787113534-13536
ORF1ab/nsp1232Y32delY4424deldelTAC---5454113534-13536
ORF1ab/nsp1232Y32FY4424FnonsyntActTc2727113534-13536
ORF1ab/nsp1232Y32NY4424NnonsynTacAac1010113534-13536
ORF1ab/nsp1232Y32del1Y4424del1delTac-ac860.7513534-13536
ORF1ab/nsp1232Y32XY4424XnonsyntaCtaA840.513534-13536
ORF1ab/nsp1232Y32XY4424XnonsyntaCtaG840.513534-13536
ORF1ab/nsp1232Y32del1Y4424del1deltaCta-820.2513534-13536
ORF1ab/nsp1232Y32DY4424DnonsynTacGac22113534-13536
ORF1ab/nsp1232Y32SY4424SnonsyntActCc22113534-13536
ORF1ab/nsp1232Y32del2Y4424del2deltACt--11113534-13536
ORF1ab/nsp1232Y32RY4424RnonsynTACCGG11113534-13536
ORF1ab/nsp1232Y32EY4424EnonsynTaCGaA11113534-13536

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1232Y32YtaCtaT3010830108All0.005759
ORF1ab/nsp1232Y32YtaCtaT84018401C.370.975046
ORF1ab/nsp1232Y32YtaCtaT29162916B.1.1.10.95263
ORF1ab/nsp1232Y32YtaCtaT24622462B.1.1.70.002204
ORF1ab/nsp1232Y32YtaCtaT17281728C.36.30.980147
ORF1ab/nsp1232Y32YtaCtaT14851485AY.40.002311
ORF1ab/nsp1232Y32YtaCtaT12641264C.350.978328
ORF1ab/nsp1232Y32YtaCtaT10701070C.360.974499
ORF1ab/nsp1232Y32YtaCtaT876876C.160.92895
ORF1ab/nsp1232Y32YtaCtaT762762B.1.617.20.002869
ORF1ab/nsp1232Y32YtaCtaT575575AY.440.0035
ORF1ab/nsp1232Y32YtaCtaT573573C.300.989637
ORF1ab/nsp1232Y32YtaCtaT406406C.10.971292
ORF1ab/nsp1232Y32YtaCtaT405405B.10.00371
ORF1ab/nsp1232Y32YtaCtaT371371C.180.96114
ORF1ab/nsp1232Y32YtaCtaT351351C.36.3.10.953804
ORF1ab/nsp1232Y32YtaCtaT338338C.37.10.884817
ORF1ab/nsp1232Y32HTacCac322322All0.000062
ORF1ab/nsp1232Y32YtaCtaT270270AY.30.002686
ORF1ab/nsp1232Y32YtaCtaT236236C.36.10.979253
ORF1ab/nsp1232Y32YtaCtaT231231C.141
ORF1ab/nsp1232Y32YtaCtaT224224C.81
ORF1ab/nsp1232Y32YtaCtaT211211C.1.20.897872
ORF1ab/nsp1232Y32YtaCtaT200200B.1.10.003628
ORF1ab/nsp1232Y32YtaCtaT171171C.230.994186
ORF1ab/nsp1232Y32YtaCtaT161161AY.1030.001
ORF1ab/nsp1232Y32YtaCtaT161161AY.980.012718
ORF1ab/nsp1232Y32YtaCtaT148148C.2.10.986667
ORF1ab/nsp1232Y32YtaCtaT147147C.30.10.986577
ORF1ab/nsp1232Y32YtaCtaT146146B.1.1600.004553
ORF1ab/nsp1232Y32YtaCtaT139139C.121
ORF1ab/nsp1232Y32YtaCtaT134134C.260.985294
ORF1ab/nsp1232Y32YtaCtaT131131C.31
ORF1ab/nsp1232Y32YtaCtaT128128AY.290.002019
ORF1ab/nsp1232Y32YtaCtaT125125B.1.1.2140.006932
ORF1ab/nsp1232Y32YtaCtaT125125P.10.001969
ORF1ab/nsp1232Y32YtaCtaT118118C.380.951613
ORF1ab/nsp1232Y32YtaCtaT105105B.1.2430.007306
ORF1ab/nsp1232Y32YtaCtaT9999B.1.5090.085714
ORF1ab/nsp1232Y32YtaCtaT9898AY.250.000589
ORF1ab/nsp1232Y32YtaCtaT9898C.40.98
ORF1ab/nsp1232Y32YtaCtaT9393C.110.989362
ORF1ab/nsp1232Y32CtActGc8787All0.000017
ORF1ab/nsp1232Y32YtaCtaT8787AY.430.000385
ORF1ab/nsp1232Y32YtaCtaT8080B.1.1.3750.952381
ORF1ab/nsp1232Y32YtaCtaT7373B.1.1770.000961
ORF1ab/nsp1232Y32YtaCtaT7373B.1.20.000643
ORF1ab/nsp1232Y32HTacCac7070B.1.617.20.000264
ORF1ab/nsp1232Y32YtaCtaT5757C.20.919355
ORF1ab/nsp1232Y32YtaCtaT5656B.1.2210.003978
ORF1ab/nsp1232Y32YtaCtaT5555C.310.982143
ORF1ab/nsp1232Y32delTAC---5454All0.00001
ORF1ab/nsp1232Y32YtaCtaT5454C.271
ORF1ab/nsp1232Y32HTacCac5151AY.440.00031
ORF1ab/nsp1232Y32YtaCtaT5151B.1.1.5190.002025
ORF1ab/nsp1232Y32YtaCtaT4949B.1.3510.001457
ORF1ab/nsp1232Y32YtaCtaT4848C.390.90566
ORF1ab/nsp1232Y32HTacCac4747B.1.258.110.018629
ORF1ab/nsp1232Y32YtaCtaT4343AY.260.001217
ORF1ab/nsp1232Y32YtaCtaT4242AY.390.001038
ORF1ab/nsp1232Y32YtaCtaT4242C.320.976744
ORF1ab/nsp1232Y32YtaCtaT3838C.130.974359
ORF1ab/nsp1232Y32YtaCtaT3737P.1.140.001769
ORF1ab/nsp1232Y32YtaCtaT3636C.401
ORF1ab/nsp1232Y32YtaCtaT3535C.190.945946
ORF1ab/nsp1232Y32YtaCtaT3434B.1.4290.0008
ORF1ab/nsp1232Y32YtaCtaT3232C.90.969697
ORF1ab/nsp1232Y32YtaCtaT3232P.1.10.010165
ORF1ab/nsp1232Y32YtaCtaT3131B.1.360.004523
ORF1ab/nsp1232Y32YtaCtaT2929C.36.21
ORF1ab/nsp1232Y32YtaCtaT2929C.71
ORF1ab/nsp1232Y32FtActTc2727All0.000005
ORF1ab/nsp1232Y32YtaCtaT2727B.1.177.860.004953
ORF1ab/nsp1232Y32YtaCtaT2727C.341
ORF1ab/nsp1232Y32YtaCtaT2626B.1.1.3720.017906
ORF1ab/nsp1232Y32YtaCtaT2626B.1.5260.000611
ORF1ab/nsp1232Y32FtActTc2525B.1.1.70.000022
ORF1ab/nsp1232Y32YtaCtaT2525C.281
ORF1ab/nsp1232Y32HTacCac2424B.1.1.70.000021
ORF1ab/nsp1232Y32YtaCtaT2424C.60.888889
ORF1ab/nsp1232Y32HTacCac2323AY.1030.000143
ORF1ab/nsp1232Y32YtaCtaT2323B.1.177.330.037829
ORF1ab/nsp1232Y32YtaCtaT2222B.1.2410.017857
ORF1ab/nsp1232Y32YtaCtaT2121AY.1200.000781
ORF1ab/nsp1232Y32CtActGc2020B.1.1.70.000018
ORF1ab/nsp1232Y32YtaCtaT1919AY.1020.000504
ORF1ab/nsp1232Y32YtaCtaT1818B.1.1.1570.016438
ORF1ab/nsp1232Y32YtaCtaT1717AY.200.000661
ORF1ab/nsp1232Y32YtaCtaT1717B.1.214.20.010192
ORF1ab/nsp1232Y32YtaCtaT1717C.331
ORF1ab/nsp1232Y32YtaCtaT1616AY.450.001947
ORF1ab/nsp1232Y32YtaCtaT1616B.1.2580.001065
ORF1ab/nsp1232Y32YtaCtaT1515AY.270.000971
ORF1ab/nsp1232Y32YtaCtaT1515AY.50.00031
ORF1ab/nsp1232Y32delTAC---1515B.1.1.70.000013
ORF1ab/nsp1232Y32YtaCtaT1515B.1.2340.001979
ORF1ab/nsp1232Y32YtaCtaT1515B.1.3110.004119
ORF1ab/nsp1232Y32YtaCtaT1414AY.1000.000644
ORF1ab/nsp1232Y32HTacCac1414AY.50.000289
ORF1ab/nsp1232Y32YtaCtaT1414AY.540.001335
ORF1ab/nsp1232Y32YtaCtaT1414B.1.1.4811
ORF1ab/nsp1232Y32YtaCtaT1414C.170.777778
ORF1ab/nsp1232Y32YtaCtaT1414C.221
ORF1ab/nsp1232Y32YtaCtaT1414C.290.875
ORF1ab/nsp1232Y32YtaCtaT1313AY.420.000523
ORF1ab/nsp1232Y32YtaCtaT1313B.1.2400.002802
ORF1ab/nsp1232Y32YtaCtaT1313C.1.11
ORF1ab/nsp1232Y32YtaCtaT1313C.201
ORF1ab/nsp1232Y32CtActGc1212AY.30.000119
ORF1ab/nsp1232Y32YtaCtaT1212AY.9.20.000441
ORF1ab/nsp1232Y32YtaCtaT1212B.1.36.290.006208
ORF1ab/nsp1232Y32YtaCtaT1212B.1.5240.016878
ORF1ab/nsp1232Y32HTacCac1111AY.40.000017
ORF1ab/nsp1232Y32HTacCac1111AY.430.000049
ORF1ab/nsp1232Y32YtaCtaT1111C.51
ORF1ab/nsp1232Y32YtaCtaT1111P.1.150.002556
ORF1ab/nsp1232Y32NTacAac1010All0.000002
ORF1ab/nsp1232Y32YtaCtaT1010AY.230.000697
ORF1ab/nsp1232Y32YtaCtaT1010B.1.160.160.009294
ORF1ab/nsp1232Y32YtaCtaT1010B.1.5680.011111
ORF1ab/nsp1232Y32YtaCtaT1010B.1.6370.000731
ORF1ab/nsp1232Y32CtActGc99AY.40.000014
ORF1ab/nsp1232Y32YtaCtaT99B.1.1.280.002801
ORF1ab/nsp1232Y32YtaCtaT99B.1.1.3170.003705
ORF1ab/nsp1232Y32YtaCtaT99B.1.177.170.007389
ORF1ab/nsp1232Y32YtaCtaT99B.1.177.600.001966
ORF1ab/nsp1232Y32YtaCtaT99B.1.5250.001018
ORF1ab/nsp1232Y32del1Tac-ac68All0.000001
ORF1ab/nsp1232Y32XtaCtaA48All0.000001
ORF1ab/nsp1232Y32XtaCtaG48All0.000001
ORF1ab/nsp1232Y32del1taCta-28All0
ORF1ab/nsp1232Y32HTacCac88AY.250.000048
ORF1ab/nsp1232Y32YtaCtaT88AY.4.20.000174
ORF1ab/nsp1232Y32YtaCtaT88AY.740.000925
ORF1ab/nsp1232Y32YtaCtaT88B.1.1.2910.005939
ORF1ab/nsp1232Y32YtaCtaT88B.1.1.4090.022663
ORF1ab/nsp1232Y32YtaCtaT88B.1.3810.0625
ORF1ab/nsp1232Y32YtaCtaT88C.251
ORF1ab/nsp1232Y32YtaCtaT88Q.10.001011
ORF1ab/nsp1232Y32HTacCac77AY.1020.000186
ORF1ab/nsp1232Y32YtaCtaT77AY.340.000679
ORF1ab/nsp1232Y32YtaCtaT77AY.46.40.001152
ORF1ab/nsp1232Y32YtaCtaT77B0.000895
ORF1ab/nsp1232Y32YtaCtaT77B.1.1.2940.008861
ORF1ab/nsp1232Y32YtaCtaT77B.1.177.70.001154
ORF1ab/nsp1232Y32YtaCtaT77B.1.3710.007856
ORF1ab/nsp1232Y32YtaCtaT77B.1.4090.005469
ORF1ab/nsp1232Y32YtaCtaT77B.1.438.10.000751
ORF1ab/nsp1232Y32YtaCtaT77B.1.466.20.002739
ORF1ab/nsp1232Y32YtaCtaT77B.1.6230.003755
ORF1ab/nsp1232Y32YtaCtaT77B.1.6250.016471
ORF1ab/nsp1232Y32YtaCtaT77C.211
ORF1ab/nsp1232Y32YtaCtaT77P.1.40.006836
ORF1ab/nsp1232Y32YtaCtaT77P.1.70.002235
ORF1ab/nsp1232Y32YtaCtaT77Q.30.001015
ORF1ab/nsp1232Y32CtActGc66AY.1030.000037
ORF1ab/nsp1232Y32YtaCtaT66AY.330.000401
ORF1ab/nsp1232Y32YtaCtaT66AY.360.000889
ORF1ab/nsp1232Y32YtaCtaT66AY.39.10.000238
ORF1ab/nsp1232Y32YtaCtaT66AY.750.000336
ORF1ab/nsp1232Y32YtaCtaT66AY.75.10.001082
ORF1ab/nsp1232Y32YtaCtaT66B.1.1.4480.012195
ORF1ab/nsp1232Y32YtaCtaT66B.1.4000.002574
ORF1ab/nsp1232Y32YtaCtaT66B.1.4270.000303
ORF1ab/nsp1232Y32YtaCtaT66B.1.4800.014925
ORF1ab/nsp1232Y32CtActGc66B.1.5260.000141
ORF1ab/nsp1232Y32YtaCtaT66B.1.5960.000523
ORF1ab/nsp1232Y32CtActGc55AY.1160.001434
ORF1ab/nsp1232Y32YtaCtaT55AY.1190.000177
ORF1ab/nsp1232Y32YtaCtaT55AY.39.20.007704
ORF1ab/nsp1232Y32HTacCac55AY.600.00469
ORF1ab/nsp1232Y32YtaCtaT55AY.99.20.000461
ORF1ab/nsp1232Y32YtaCtaT55B.1.1.3020.010373
ORF1ab/nsp1232Y32YtaCtaT55B.1.1.3060.002192
ORF1ab/nsp1232Y32YtaCtaT55B.1.1.5230.007812
ORF1ab/nsp1232Y32YtaCtaT55B.1.160.120.032051
ORF1ab/nsp1232Y32YtaCtaT55B.1.230.030303
ORF1ab/nsp1232Y32YtaCtaT55B.1.258.170.00052
ORF1ab/nsp1232Y32YtaCtaT55B.1.5950.001305
ORF1ab/nsp1232Y32YtaCtaT55B.400.001821
ORF1ab/nsp1232Y32YtaCtaT55P.30.007974
ORF1ab/nsp1232Y32YtaCtaT44A.2.50.001996
ORF1ab/nsp1232Y32YtaCtaT44AY.116.10.001246
ORF1ab/nsp1232Y32YtaCtaT44AY.1170.000338
ORF1ab/nsp1232Y32YtaCtaT44AY.130.000644
ORF1ab/nsp1232Y32YtaCtaT44AY.3.10.000341
ORF1ab/nsp1232Y32YtaCtaT44AY.350.000932
ORF1ab/nsp1232Y32YtaCtaT44AY.4.2.10.000596
ORF1ab/nsp1232Y32YtaCtaT44AY.60.000165
ORF1ab/nsp1232Y32YtaCtaT44AY.98.10.000194
ORF1ab/nsp1232Y32YtaCtaT44B.1.1.3480.003185
ORF1ab/nsp1232Y32YtaCtaT44B.1.177.870.002911
ORF1ab/nsp1232Y32YtaCtaT44B.1.243.20.057971
ORF1ab/nsp1232Y32YtaCtaT44B.1.2670.074074
ORF1ab/nsp1232Y32YtaCtaT44B.1.36.170.001976
ORF1ab/nsp1232Y32HTacCac44B.1.4270.000202
ORF1ab/nsp1232Y32YtaCtaT44B.1.4380.026144
ORF1ab/nsp1232Y32YtaCtaT44B.1.6210.000354
ORF1ab/nsp1232Y32YtaCtaT44B.1.621.10.002023
ORF1ab/nsp1232Y32YtaCtaT44C.101
ORF1ab/nsp1232Y32YtaCtaT33AY.1180.000188
ORF1ab/nsp1232Y32YtaCtaT33AY.160.001139
ORF1ab/nsp1232Y32del1Tac-ac33AY.250.000018
ORF1ab/nsp1232Y32HTacCac33AY.260.000085
ORF1ab/nsp1232Y32YtaCtaT33AY.320.001597
ORF1ab/nsp1232Y32HTacCac33AY.330.0002
ORF1ab/nsp1232Y32delTAC---33AY.430.000013
ORF1ab/nsp1232Y32YtaCtaT33AY.46.60.000217
ORF1ab/nsp1232Y32YtaCtaT33AY.470.000093
ORF1ab/nsp1232Y32YtaCtaT33AY.770.003382
ORF1ab/nsp1232Y32delTAC---33B.1.10.000054
ORF1ab/nsp1232Y32YtaCtaT33B.1.1.2200.005576
ORF1ab/nsp1232Y32YtaCtaT33B.1.1.250.001706
ORF1ab/nsp1232Y32YtaCtaT33B.1.1.2840.000322
ORF1ab/nsp1232Y32YtaCtaT33B.1.1.3740.007126
ORF1ab/nsp1232Y32YtaCtaT33B.1.1.4870.01676
ORF1ab/nsp1232Y32CtActGc33B.1.1.5190.000119
ORF1ab/nsp1232Y32YtaCtaT33B.1.1.700.001023
ORF1ab/nsp1232Y32YtaCtaT33B.1.214.30.021429
ORF1ab/nsp1232Y32YtaCtaT33B.1.258.210.023256
ORF1ab/nsp1232Y32YtaCtaT33B.1.351.50.001799
ORF1ab/nsp1232Y32YtaCtaT33B.1.3990.005803
ORF1ab/nsp1232Y32YtaCtaT33B.1.4200.03125
ORF1ab/nsp1232Y32delTAC---33B.1.4270.000151
ORF1ab/nsp1232Y32YtaCtaT33B.1.6090.001438
ORF1ab/nsp1232Y32CtActGc33P.10.000047
ORF1ab/nsp1232Y32YtaCtaT33P.20.00056
ORF1ab/nsp1232Y32YtaCtaT22A0.000774
ORF1ab/nsp1232Y32YtaCtaT22A.23.10.001408
ORF1ab/nsp1232Y32DTacGac22All0
ORF1ab/nsp1232Y32StActCc22All0
ORF1ab/nsp1232Y32CtActGc22AY.1020.000053
ORF1ab/nsp1232Y32HTacCac22AY.1180.000125
ORF1ab/nsp1232Y32YtaCtaT22AY.120.10.000642
ORF1ab/nsp1232Y32HTacCac22AY.130.000322
ORF1ab/nsp1232Y32YtaCtaT22AY.210.003795
ORF1ab/nsp1232Y32CtActGc22AY.250.000012
ORF1ab/nsp1232Y32HTacCac22AY.30.00002
ORF1ab/nsp1232Y32YtaCtaT22AY.34.10.00102
ORF1ab/nsp1232Y32HTacCac22AY.4.50.000215
ORF1ab/nsp1232Y32CtActGc22AY.440.000012
ORF1ab/nsp1232Y32YtaCtaT22AY.460.000208
ORF1ab/nsp1232Y32YtaCtaT22AY.46.30.001867
ORF1ab/nsp1232Y32YtaCtaT22AY.480.00093
ORF1ab/nsp1232Y32YtaCtaT22AY.5.40.000553
ORF1ab/nsp1232Y32YtaCtaT22AY.610.00021
ORF1ab/nsp1232Y32YtaCtaT22AY.620.000871
ORF1ab/nsp1232Y32YtaCtaT22AY.630.000774
ORF1ab/nsp1232Y32YtaCtaT22AY.810.003984
ORF1ab/nsp1232Y32YtaCtaT22AY.840.000875
ORF1ab/nsp1232Y32YtaCtaT22AY.860.00166
ORF1ab/nsp1232Y32YtaCtaT22AY.920.000575
ORF1ab/nsp1232Y32HTacCac22AY.980.000158
ORF1ab/nsp1232Y32HTacCac22B.1.10.000036
ORF1ab/nsp1232Y32YtaCtaT22B.1.1.1610.007067
ORF1ab/nsp1232Y32YtaCtaT22B.1.1.2220.000408
ORF1ab/nsp1232Y32YtaCtaT22B.1.1.390.001019
ORF1ab/nsp1232Y32YtaCtaT22B.1.1.3970.004505
ORF1ab/nsp1232Y32YtaCtaT22B.1.1.5260.007092
ORF1ab/nsp1232Y32NTacAac22B.1.1.70.000002
ORF1ab/nsp1232Y32del1taCta-12B.1.1.70.000001
ORF1ab/nsp1232Y32del1Tac-ac12B.1.1.70.000001
ORF1ab/nsp1232Y32YtaCtaT22B.1.1.830.00542
ORF1ab/nsp1232Y32YtaCtaT22B.1.1371
ORF1ab/nsp1232Y32NTacAac22B.1.1600.000062
ORF1ab/nsp1232Y32YtaCtaT22B.1.160.200.017857
ORF1ab/nsp1232Y32YtaCtaT22B.1.1700.008621
ORF1ab/nsp1232Y32YtaCtaT22B.1.177.210.000153
ORF1ab/nsp1232Y32YtaCtaT22B.1.177.530.004785
ORF1ab/nsp1232Y32HTacCac22B.1.177.620.002384
ORF1ab/nsp1232Y32HTacCac22B.1.20.000018
ORF1ab/nsp1232Y32delTAC---22B.1.20.000018
ORF1ab/nsp1232Y32YtaCtaT22B.1.221.30.001667
ORF1ab/nsp1232Y32YtaCtaT22B.1.2320.001075
ORF1ab/nsp1232Y32YtaCtaT22B.1.2600.006689
ORF1ab/nsp1232Y32YtaCtaT22B.1.3290.001215
ORF1ab/nsp1232Y32YtaCtaT22B.1.351.20.000605
ORF1ab/nsp1232Y32YtaCtaT22B.1.36.10.002281
ORF1ab/nsp1232Y32CtActGc22B.1.36.290.001035
ORF1ab/nsp1232Y32YtaCtaT22B.1.36.80.002
ORF1ab/nsp1232Y32YtaCtaT22B.1.3910.002255
ORF1ab/nsp1232Y32YtaCtaT22B.1.4160.002538
ORF1ab/nsp1232Y32YtaCtaT22B.1.4740.003802
ORF1ab/nsp1232Y32YtaCtaT22B.1.5450.028986
ORF1ab/nsp1232Y32YtaCtaT22B.1.5750.000607
ORF1ab/nsp1232Y32YtaCtaT22B.1.5760.001813
ORF1ab/nsp1232Y32YtaCtaT22B.1.5770.001375
ORF1ab/nsp1232Y32YtaCtaT22B.1.617.10.000258
ORF1ab/nsp1232Y32HTacCac22B.1.617.10.000258
ORF1ab/nsp1232Y32CtActGc22B.1.617.20.000008
ORF1ab/nsp1232Y32delTAC---22B.1.617.20.000008
ORF1ab/nsp1232Y32YtaCtaT22B.1.6280.000705
ORF1ab/nsp1232Y32CtActGc22B.1.6370.000146
ORF1ab/nsp1232Y32YtaCtaT22B.1.810.042553
ORF1ab/nsp1232Y32YtaCtaT22D.20.00015
ORF1ab/nsp1232Y32YtaCtaT22N.40.008511
ORF1ab/nsp1232Y32delTAC---22P.10.000032
ORF1ab/nsp1232Y32YtaCtaT22P.1.120.000968
ORF1ab/nsp1232Y32delTAC---22P.1.150.000465
ORF1ab/nsp1232Y32YtaCtaT22P.1.170.000324
ORF1ab/nsp1232Y32YtaCtaT22R.10.00018
ORF1ab/nsp1232Y32YtaCtaT11A.10.000282
ORF1ab/nsp1232Y32YtaCtaT11AH.30.003802
ORF1ab/nsp1232Y32HTacCac11AK.10.012658
ORF1ab/nsp1232Y32RTACCGG11All0
ORF1ab/nsp1232Y32del2tACt--11All0
ORF1ab/nsp1232Y32ETaCGaA11All0
ORF1ab/nsp1232Y32YtaCtaT11AM.40.003571
ORF1ab/nsp1232Y32HTacCac11AY.1000.000046
ORF1ab/nsp1232Y32YtaCtaT11AY.1050.000643
ORF1ab/nsp1232Y32YtaCtaT11AY.1080.001103
ORF1ab/nsp1232Y32YtaCtaT11AY.1090.00074
ORF1ab/nsp1232Y32HTacCac11AY.1100.000113
ORF1ab/nsp1232Y32YtaCtaT11AY.1110.000183
ORF1ab/nsp1232Y32YtaCtaT11AY.1140.000231
ORF1ab/nsp1232Y32YtaCtaT11AY.1160.000287
ORF1ab/nsp1232Y32HTacCac11AY.1170.000085
ORF1ab/nsp1232Y32CtActGc11AY.1180.000063
ORF1ab/nsp1232Y32CtActGc11AY.1190.000035
ORF1ab/nsp1232Y32delTAC---11AY.1190.000035
ORF1ab/nsp1232Y32YtaCtaT11AY.120.2.10.000498
ORF1ab/nsp1232Y32YtaCtaT11AY.1210.000135
ORF1ab/nsp1232Y32YtaCtaT11AY.140.000088
ORF1ab/nsp1232Y32HTacCac11AY.200.000039
ORF1ab/nsp1232Y32FtActTc11AY.250.000006
ORF1ab/nsp1232Y32delTAC---11AY.250.000006
ORF1ab/nsp1232Y32NTacAac11AY.250.000006
ORF1ab/nsp1232Y32CtActGc11AY.260.000028
ORF1ab/nsp1232Y32CtActGc11AY.290.000016
ORF1ab/nsp1232Y32YtaCtaT11AY.29.10.000221
ORF1ab/nsp1232Y32CtActGc11AY.320.000532
ORF1ab/nsp1232Y32HTacCac11AY.360.000148
ORF1ab/nsp1232Y32HTacCac11AY.390.000025
ORF1ab/nsp1232Y32delTAC---11AY.40.000002
ORF1ab/nsp1232Y32YtaCtaT11AY.4.50.000107
ORF1ab/nsp1232Y32delTAC---11AY.4.50.000107
ORF1ab/nsp1232Y32del1Tac-ac11AY.430.000004
ORF1ab/nsp1232Y32XtaCtaA11AY.440.000006
ORF1ab/nsp1232Y32CtActGc11AY.460.000104
ORF1ab/nsp1232Y32YtaCtaT11AY.46.20.000635
ORF1ab/nsp1232Y32HTacCac11AY.46.60.000072
ORF1ab/nsp1232Y32HTacCac11AY.470.000031
ORF1ab/nsp1232Y32XtaCtaG11AY.50.000021
ORF1ab/nsp1232Y32YtaCtaT11AY.5.30.000337
ORF1ab/nsp1232Y32HTacCac11AY.5.30.000337
ORF1ab/nsp1232Y32HTacCac11AY.500.000799
ORF1ab/nsp1232Y32YtaCtaT11AY.510.000909
ORF1ab/nsp1232Y32YtaCtaT11AY.520.000814
ORF1ab/nsp1232Y32CtActGc11AY.540.000095
ORF1ab/nsp1232Y32YtaCtaT11AY.570.000656
ORF1ab/nsp1232Y32YtaCtaT11AY.580.000907
ORF1ab/nsp1232Y32CtActGc11AY.590.00053
ORF1ab/nsp1232Y32delTAC---11AY.60.000041
ORF1ab/nsp1232Y32YtaCtaT11AY.600.000938
ORF1ab/nsp1232Y32delTAC---11AY.660.00107
ORF1ab/nsp1232Y32YtaCtaT11AY.680.000274
ORF1ab/nsp1232Y32XtaCtaA11AY.690.000187
ORF1ab/nsp1232Y32YtaCtaT11AY.70.000196
ORF1ab/nsp1232Y32YtaCtaT11AY.7.20.000559
ORF1ab/nsp1232Y32YtaCtaT11AY.700.000209
ORF1ab/nsp1232Y32delTAC---11AY.720.001361
ORF1ab/nsp1232Y32NTacAac11AY.75.10.00018
ORF1ab/nsp1232Y32YtaCtaT11AY.820.001357
ORF1ab/nsp1232Y32YtaCtaT11AY.880.000884
ORF1ab/nsp1232Y32YtaCtaT11AY.90.000068
ORF1ab/nsp1232Y32YtaCtaT11AY.9.10.000084
ORF1ab/nsp1232Y32YtaCtaT11AY.910.00073
ORF1ab/nsp1232Y32delTAC---11AY.990.001049
ORF1ab/nsp1232Y32RTACCGG11AY.990.001049
ORF1ab/nsp1232Y32delTAC---11AY.99.20.000092
ORF1ab/nsp1232Y32HTacCac11AY.99.20.000092
ORF1ab/nsp1232Y32delTAC---11B0.000128
ORF1ab/nsp1232Y32XtaCtaA11B0.000128
ORF1ab/nsp1232Y32NTacAac11B.10.000009
ORF1ab/nsp1232Y32XtaCtaA11B.10.000009
ORF1ab/nsp1232Y32HTacCac11B.10.000009
ORF1ab/nsp1232Y32delTAC---11B.10.000009
ORF1ab/nsp1232Y32NTacAac11B.1.10.000018
ORF1ab/nsp1232Y32CtActGc11B.1.10.000018
ORF1ab/nsp1232Y32delTAC---11B.1.1.10.000327
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.1280.007092
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.1370.0125
ORF1ab/nsp1232Y32ETaCGaA11B.1.1.1390.022727
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.1590.004673
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.1640.005155
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.1940.00495
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.2010.02439
ORF1ab/nsp1232Y32HTacCac11B.1.1.2140.000055
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.2160.00089
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.2690.001353
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.2900.018182
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.30.008696
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.3010.001179
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.3090.005848
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.3180.000302
ORF1ab/nsp1232Y32HTacCac11B.1.1.3180.000302
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.3240.052632
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.3290.003846
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.330.000421
ORF1ab/nsp1232Y32delTAC---11B.1.1.3480.000796
ORF1ab/nsp1232Y32HTacCac11B.1.1.390.00051
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.4020.011111
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.4200.001006
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.4340.000349
ORF1ab/nsp1232Y32HTacCac11B.1.1.4480.002033
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.470.005348
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.520.012195
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.5210.005348
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.5280.004808
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.630.000386
ORF1ab/nsp1232Y32XtaCtaG11B.1.1.70.000001
ORF1ab/nsp1232Y32StActCc11B.1.1.70.000001
ORF1ab/nsp1232Y32del2tACt--11B.1.1.70.000001
ORF1ab/nsp1232Y32delTAC---11B.1.1.700.000341
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.740.00431
ORF1ab/nsp1232Y32YtaCtaT11B.1.1.990.02381
ORF1ab/nsp1232Y32YtaCtaT11B.1.1100.004525
ORF1ab/nsp1232Y32delTAC---11B.1.1770.000013
ORF1ab/nsp1232Y32HTacCac11B.1.1770.000013
ORF1ab/nsp1232Y32YtaCtaT11B.1.177.110.001698
ORF1ab/nsp1232Y32YtaCtaT11B.1.177.120.000152
ORF1ab/nsp1232Y32YtaCtaT11B.1.177.150.000631
ORF1ab/nsp1232Y32HTacCac11B.1.177.320.00135
ORF1ab/nsp1232Y32YtaCtaT11B.1.177.40.000211
ORF1ab/nsp1232Y32YtaCtaT11B.1.177.440.000519
ORF1ab/nsp1232Y32YtaCtaT11B.1.177.60.000977
ORF1ab/nsp1232Y32HTacCac11B.1.177.750.001041
ORF1ab/nsp1232Y32YtaCtaT11B.1.177.80.000752
ORF1ab/nsp1232Y32YtaCtaT11B.1.177.810.000189
ORF1ab/nsp1232Y32YtaCtaT11B.1.177.840.006667
ORF1ab/nsp1232Y32YtaCtaT11B.1.1790.003759
ORF1ab/nsp1232Y32NTacAac11B.1.20.000009
ORF1ab/nsp1232Y32YtaCtaT11B.1.2060.000816
ORF1ab/nsp1232Y32YtaCtaT11B.1.2100.002132
ORF1ab/nsp1232Y32YtaCtaT11B.1.2220.001692
ORF1ab/nsp1232Y32CtActGc11B.1.2320.000537
ORF1ab/nsp1232Y32YtaCtaT11B.1.2360.002053
ORF1ab/nsp1232Y32YtaCtaT11B.1.258.110.000396
ORF1ab/nsp1232Y32YtaCtaT11B.1.258.30.001675
ORF1ab/nsp1232Y32YtaCtaT11B.1.2640.012346
ORF1ab/nsp1232Y32YtaCtaT11B.1.3240.001605
ORF1ab/nsp1232Y32YtaCtaT11B.1.3330.010526
ORF1ab/nsp1232Y32HTacCac11B.1.3560.001727
ORF1ab/nsp1232Y32YtaCtaT11B.1.36.180.00042
ORF1ab/nsp1232Y32del1taCta-11B.1.36.290.000517
ORF1ab/nsp1232Y32YtaCtaT11B.1.36.310.001751
ORF1ab/nsp1232Y32YtaCtaT11B.1.3750.00082
ORF1ab/nsp1232Y32YtaCtaT11B.1.3850.010638
ORF1ab/nsp1232Y32YtaCtaT11B.1.3890.001002
ORF1ab/nsp1232Y32YtaCtaT11B.1.3960.000706
ORF1ab/nsp1232Y32delTAC---11B.1.4150.014286
ORF1ab/nsp1232Y32XtaCtaG11B.1.4170.028571
ORF1ab/nsp1232Y32NTacAac11B.1.4270.00005
ORF1ab/nsp1232Y32DTacGac11B.1.4270.00005
ORF1ab/nsp1232Y32del1Tac-ac11B.1.4270.00005
ORF1ab/nsp1232Y32HTacCac11B.1.4290.000024
ORF1ab/nsp1232Y32YtaCtaT11B.1.4320.011236
ORF1ab/nsp1232Y32YtaCtaT11B.1.440.008333
ORF1ab/nsp1232Y32delTAC---11B.1.4460.02
ORF1ab/nsp1232Y32YtaCtaT11B.1.4700.001404
ORF1ab/nsp1232Y32YtaCtaT11B.1.4870.019608
ORF1ab/nsp1232Y32HTacCac11B.1.4970.000315
ORF1ab/nsp1232Y32XtaCtaG11B.1.5250.000113
ORF1ab/nsp1232Y32CtActGc11B.1.5410.004425
ORF1ab/nsp1232Y32YtaCtaT11B.1.5700.002941
ORF1ab/nsp1232Y32YtaCtaT11B.1.5880.00091
ORF1ab/nsp1232Y32YtaCtaT11B.1.6180.004032
ORF1ab/nsp1232Y32delTAC---11B.1.6210.000089
ORF1ab/nsp1232Y32YtaCtaT11B.1.6270.00202
ORF1ab/nsp1232Y32YtaCtaT11B.1.780.008547
ORF1ab/nsp1232Y32YtaCtaT11B.1.9.50.005682
ORF1ab/nsp1232Y32delTAC---11C.170.055556
ORF1ab/nsp1232Y32delTAC---11C.370.000116
ORF1ab/nsp1232Y32YtaCtaT11N.60.007092
ORF1ab/nsp1232Y32StActCc11P.1.10.000318
ORF1ab/nsp1232Y32FtActTc11P.1.10.000318
ORF1ab/nsp1232Y32delTAC---11P.20.000187
ORF1ab/nsp1232Y32delTAC---11Q.20.000613
ORF1ab/nsp1232Y32DTacGac11Q.40.000455
ORF1ab/nsp1232Y32YtaCtaT11Q.40.000455
ORF1ab/nsp1232Y32YtaCtaT11Q.80.000165