CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 319

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12319T319IT4711InonsynaCaaTa28872887114395-14397
ORF1ab/nsp12319T319TT4711TsynacAacG4953120.63030314395-14397
ORF1ab/nsp12319T319TT4711TsynacAacT4951770.35757614395-14397
ORF1ab/nsp12319T319TT4711TsynacAacC49560.012121214395-14397
ORF1ab/nsp12319T319AT4711AnonsynAcaGca4694660.99360314395-14397
ORF1ab/nsp12319T319AT4711AnonsynAcAGcT46920.0042643914395-14397
ORF1ab/nsp12319T319AT4711AnonsynAcAGcG46910.002132214395-14397
ORF1ab/nsp12319T319delT4711deldelACA---140140114395-14397
ORF1ab/nsp12319T319KT4711KnonsynaCaaAa2828114395-14397
ORF1ab/nsp12319T319RT4711RnonsynaCaaGa77114395-14397
ORF1ab/nsp12319T319ST4711SnonsynAcaTca66114395-14397
ORF1ab/nsp12319T319ET4711EnonsynACaGAa44114395-14397
ORF1ab/nsp12319T319LT4711LnonsynACaTTa430.7514395-14397
ORF1ab/nsp12319T319LT4711LnonsynACaCTa410.2514395-14397
ORF1ab/nsp12319T319VT4711VnonsynACaGTa320.66666714395-14397
ORF1ab/nsp12319T319VT4711VnonsynACAGTG310.33333314395-14397
ORF1ab/nsp12319T319del1T4711del1delAca-ca22114395-14397
ORF1ab/nsp12319T319NT4711NnonsynaCAaAC22114395-14397
ORF1ab/nsp12319T319MT4711MnonsynaCAaTG22114395-14397
ORF1ab/nsp12319T319PT4711PnonsynAcaCca22114395-14397
ORF1ab/nsp12319T319del2T4711del2delACa--a210.514395-14397
ORF1ab/nsp12319T319del2T4711del2delaCAa--210.514395-14397

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12319T319IaCaaTa28872887All0.000552
ORF1ab/nsp12319T319IaCaaTa551551B.1.1.70.000493
ORF1ab/nsp12319T319TacAacG312495All0.00006
ORF1ab/nsp12319T319TacAacT177495All0.000034
ORF1ab/nsp12319T319TacAacC6495All0.000001
ORF1ab/nsp12319T319AAcaGca466469All0.000089
ORF1ab/nsp12319T319AAcAGcT2469All0
ORF1ab/nsp12319T319AAcAGcG1469All0
ORF1ab/nsp12319T319IaCaaTa315315B.1.617.20.001186
ORF1ab/nsp12319T319AAcaGca295295AY.30.002934
ORF1ab/nsp12319T319TacAacT163287B.1.1.70.000146
ORF1ab/nsp12319T319TacAacG124287B.1.1.70.000111
ORF1ab/nsp12319T319IaCaaTa217217AY.40.000338
ORF1ab/nsp12319T319IaCaaTa182182AY.340.017648
ORF1ab/nsp12319T319IaCaaTa177177AY.260.005011
ORF1ab/nsp12319T319IaCaaTa177177B.1.6370.012934
ORF1ab/nsp12319T319delACA---140140All0.000027
ORF1ab/nsp12319T319IaCaaTa9696AY.440.000584
ORF1ab/nsp12319T319IaCaaTa8686AY.250.000517
ORF1ab/nsp12319T319delACA---7676B.1.1.70.000068
ORF1ab/nsp12319T319IaCaaTa7272AY.1030.000447
ORF1ab/nsp12319T319IaCaaTa6565AY.30.000647
ORF1ab/nsp12319T319IaCaaTa6161AY.430.00027
ORF1ab/nsp12319T319IaCaaTa5959AY.4.20.00128
ORF1ab/nsp12319T319IaCaaTa5757C.370.006616
ORF1ab/nsp12319T319IaCaaTa5151B.1.20.000449
ORF1ab/nsp12319T319AAcaGca4646AY.5.30.01552
ORF1ab/nsp12319T319TacAacG4445AY.40.000068
ORF1ab/nsp12319T319TacAacC145AY.40.000002
ORF1ab/nsp12319T319IaCaaTa4444B.10.000403
ORF1ab/nsp12319T319AAcaGca4040B.1.1770.000527
ORF1ab/nsp12319T319TacAacG3939AY.1200.00145
ORF1ab/nsp12319T319TacAacG3838AY.120.01201
ORF1ab/nsp12319T319IaCaaTa3232P.10.000504
ORF1ab/nsp12319T319IaCaaTa3030AY.230.002092
ORF1ab/nsp12319T319IaCaaTa2929B.1.1.401
ORF1ab/nsp12319T319KaCaaAa2828All0.000005
ORF1ab/nsp12319T319IaCaaTa2020B.1.1.3060.008768
ORF1ab/nsp12319T319IaCaaTa1919AY.750.001064
ORF1ab/nsp12319T319IaCaaTa1919B.1.5960.001656
ORF1ab/nsp12319T319IaCaaTa1818B.1.4290.000424
ORF1ab/nsp12319T319IaCaaTa1717B.1.10.000308
ORF1ab/nsp12319T319KaCaaAa1717B.1.617.30.050746
ORF1ab/nsp12319T319IaCaaTa1616B.1.177.860.002935
ORF1ab/nsp12319T319IaCaaTa1616B.1.5750.004854
ORF1ab/nsp12319T319IaCaaTa1414B.1.5260.000329
ORF1ab/nsp12319T319AAcaGca1414P.1.140.000669
ORF1ab/nsp12319T319IaCaaTa1212AY.1020.000318
ORF1ab/nsp12319T319IaCaaTa1212AY.270.000777
ORF1ab/nsp12319T319IaCaaTa1212AY.400.011572
ORF1ab/nsp12319T319IaCaaTa1212B.1.1.5190.000477
ORF1ab/nsp12319T319IaCaaTa1212B.1.1770.000158
ORF1ab/nsp12319T319IaCaaTa1212B.1.5170.005124
ORF1ab/nsp12319T319IaCaaTa1111AY.290.000174
ORF1ab/nsp12319T319delACA---1111AY.40.000017
ORF1ab/nsp12319T319IaCaaTa1111AY.50.000227
ORF1ab/nsp12319T319TacAacG1011AY.99.20.000922
ORF1ab/nsp12319T319TacAacT111AY.99.20.000092
ORF1ab/nsp12319T319AAcaGca1111B.1.1.70.00001
ORF1ab/nsp12319T319IaCaaTa1111B.1.2400.002371
ORF1ab/nsp12319T319IaCaaTa1010AY.1190.000353
ORF1ab/nsp12319T319AAcaGca1010AY.40.000016
ORF1ab/nsp12319T319IaCaaTa1010B.1.2510.217391
ORF1ab/nsp12319T319AAcaGca99AY.1020.000239
ORF1ab/nsp12319T319IaCaaTa99AY.470.00028
ORF1ab/nsp12319T319IaCaaTa99B.1.1.3180.002716
ORF1ab/nsp12319T319IaCaaTa99B.1.1600.000281
ORF1ab/nsp12319T319IaCaaTa99B.1.3510.000268
ORF1ab/nsp12319T319IaCaaTa99D.20.000675
ORF1ab/nsp12319T319IaCaaTa88AY.850.003417
ORF1ab/nsp12319T319IaCaaTa88B.1.1.330.003367
ORF1ab/nsp12319T319RaCaaGa77All0.000001
ORF1ab/nsp12319T319IaCaaTa77AY.1130.000997
ORF1ab/nsp12319T319TacAacG77B.1.617.20.000026
ORF1ab/nsp12319T319SAcaTca66All0.000001
ORF1ab/nsp12319T319IaCaaTa66AY.200.000233
ORF1ab/nsp12319T319delACA---66AY.430.000027
ORF1ab/nsp12319T319IaCaaTa66AY.75.10.001082
ORF1ab/nsp12319T319TacAacG66AY.910.004383
ORF1ab/nsp12319T319IaCaaTa66B.1.177.730.003398
ORF1ab/nsp12319T319AAcaGca66B.1.617.20.000023
ORF1ab/nsp12319T319IaCaaTa55AY.39.10.000198
ORF1ab/nsp12319T319delACA---55AY.4.50.000537
ORF1ab/nsp12319T319IaCaaTa55AY.460.00052
ORF1ab/nsp12319T319IaCaaTa55AY.46.40.000823
ORF1ab/nsp12319T319IaCaaTa55AY.980.000395
ORF1ab/nsp12319T319TacAacG35B.10.000027
ORF1ab/nsp12319T319TacAacC25B.10.000018
ORF1ab/nsp12319T319TacAacG55B.1.1770.000066
ORF1ab/nsp12319T319TacAacT45B.1.20.000035
ORF1ab/nsp12319T319TacAacG15B.1.20.000009
ORF1ab/nsp12319T319TacAacG55B.1.3750.004098
ORF1ab/nsp12319T319RaCaaGa55P.10.000079
ORF1ab/nsp12319T319IaCaaTa55P.1.130.004492
ORF1ab/nsp12319T319IaCaaTa55P.1.150.001162
ORF1ab/nsp12319T319EACaGAa440.222222
ORF1ab/nsp12319T319EACaGAa44All0.000001
ORF1ab/nsp12319T319LACaTTa34All0.000001
ORF1ab/nsp12319T319LACaCTa14All0
ORF1ab/nsp12319T319IaCaaTa44AY.1070.001864
ORF1ab/nsp12319T319AAcaGca44AY.1110.000733
ORF1ab/nsp12319T319IaCaaTa44AY.1200.000149
ORF1ab/nsp12319T319AAcaGca34AY.440.000018
ORF1ab/nsp12319T319AAcAGcT14AY.440.000006
ORF1ab/nsp12319T319IaCaaTa44AY.640.002381
ORF1ab/nsp12319T319TacAacG44B.1.10.000073
ORF1ab/nsp12319T319IaCaaTa44B.1.1.2140.000222
ORF1ab/nsp12319T319IaCaaTa44B.1.1.2630.006231
ORF1ab/nsp12319T319IaCaaTa44B.1.2210.000284
ORF1ab/nsp12319T319IaCaaTa44B.1.2580.000266
ORF1ab/nsp12319T319IaCaaTa44P.1.100.001078
ORF1ab/nsp12319T319IaCaaTa33A.23.10.002113
ORF1ab/nsp12319T319VACaGTa23All0
ORF1ab/nsp12319T319VACAGTG13All0
ORF1ab/nsp12319T319IaCaaTa33AY.1040.005952
ORF1ab/nsp12319T319IaCaaTa33AY.1170.000254
ORF1ab/nsp12319T319AAcaGca33AY.1170.000254
ORF1ab/nsp12319T319IaCaaTa33AY.1210.000406
ORF1ab/nsp12319T319IaCaaTa33AY.390.000074
ORF1ab/nsp12319T319TacAacT23AY.4.20.000043
ORF1ab/nsp12319T319TacAacG13AY.4.20.000022
ORF1ab/nsp12319T319IaCaaTa33AY.420.000121
ORF1ab/nsp12319T319IaCaaTa33AY.46.20.001906
ORF1ab/nsp12319T319IaCaaTa33AY.540.000286
ORF1ab/nsp12319T319IaCaaTa33AY.60.000123
ORF1ab/nsp12319T319IaCaaTa33AY.610.000314
ORF1ab/nsp12319T319IaCaaTa33AY.670.001393
ORF1ab/nsp12319T319IaCaaTa33AY.99.20.000276
ORF1ab/nsp12319T319AAcaGca33B.10.000027
ORF1ab/nsp12319T319IaCaaTa33B.1.1.250.001706
ORF1ab/nsp12319T319IaCaaTa33B.1.1.2840.000322
ORF1ab/nsp12319T319delACA---33B.1.1770.00004
ORF1ab/nsp12319T319AAcaGca33B.1.177.460.002755
ORF1ab/nsp12319T319delACA---33B.1.3670.002377
ORF1ab/nsp12319T319IaCaaTa33B.1.4270.000151
ORF1ab/nsp12319T319TacAacC23B.1.4270.000101
ORF1ab/nsp12319T319TacAacG13B.1.4270.00005
ORF1ab/nsp12319T319KaCaaAa33P.1.130.002695
ORF1ab/nsp12319T319TacAacT33Q.80.000495
ORF1ab/nsp12319T319NaCAaAC220.111111
ORF1ab/nsp12319T319IaCaaTa220.111111
ORF1ab/nsp12319T319LACaTTa220.111111
ORF1ab/nsp12319T319VACaGTa220.111111
ORF1ab/nsp12319T319IaCaaTa22A0.000774
ORF1ab/nsp12319T319NaCAaAC22All0
ORF1ab/nsp12319T319del1Aca-ca22All0
ORF1ab/nsp12319T319MaCAaTG22All0
ORF1ab/nsp12319T319PAcaCca22All0
ORF1ab/nsp12319T319del2ACa--a12All0
ORF1ab/nsp12319T319del2aCAa--12All0
ORF1ab/nsp12319T319IaCaaTa22AY.1000.000092
ORF1ab/nsp12319T319IaCaaTa22AY.1050.001286
ORF1ab/nsp12319T319IaCaaTa22AY.1140.000462
ORF1ab/nsp12319T319IaCaaTa22AY.1180.000125
ORF1ab/nsp12319T319AAcaGca22AY.1190.000071
ORF1ab/nsp12319T319IaCaaTa22AY.120.10.000642
ORF1ab/nsp12319T319TacAacG22AY.120.10.000642
ORF1ab/nsp12319T319TacAacG22AY.390.000049
ORF1ab/nsp12319T319AAcaGca22AY.390.000049
ORF1ab/nsp12319T319IaCaaTa22AY.46.60.000144
ORF1ab/nsp12319T319TacAacG22AY.470.000062
ORF1ab/nsp12319T319IaCaaTa22AY.490.00639
ORF1ab/nsp12319T319TacAacG22AY.5.40.000553
ORF1ab/nsp12319T319IaCaaTa22AY.560.00321
ORF1ab/nsp12319T319IaCaaTa22AY.590.001059
ORF1ab/nsp12319T319IaCaaTa22AY.650.001066
ORF1ab/nsp12319T319IaCaaTa22AY.7.10.000225
ORF1ab/nsp12319T319IaCaaTa22AY.9.20.000073
ORF1ab/nsp12319T319IaCaaTa22AY.930.000546
ORF1ab/nsp12319T319delACA---22B.10.000018
ORF1ab/nsp12319T319AAcaGca22B.1.1.10.000653
ORF1ab/nsp12319T319IaCaaTa22B.1.1.4340.000697
ORF1ab/nsp12319T319IaCaaTa22B.1.1.520.02439
ORF1ab/nsp12319T319IaCaaTa22B.1.1.630.000772
ORF1ab/nsp12319T319IaCaaTa22B.1.110.30.001437
ORF1ab/nsp12319T319TacAacG22B.1.177.160.001329
ORF1ab/nsp12319T319delACA---22B.1.177.180.00232
ORF1ab/nsp12319T319IaCaaTa22B.1.177.70.00033
ORF1ab/nsp12319T319delACA---22B.1.20.000018
ORF1ab/nsp12319T319IaCaaTa22B.1.2340.000264
ORF1ab/nsp12319T319IaCaaTa22B.1.360.000292
ORF1ab/nsp12319T319IaCaaTa22B.1.36.220.002415
ORF1ab/nsp12319T319IaCaaTa22B.1.4280.002041
ORF1ab/nsp12319T319TacAacG12B.1.5260.000024
ORF1ab/nsp12319T319TacAacT12B.1.5260.000024
ORF1ab/nsp12319T319IaCaaTa22B.1.5380.016129
ORF1ab/nsp12319T319IaCaaTa22B.1.5890.015152
ORF1ab/nsp12319T319PAcaCca22B.1.617.20.000008
ORF1ab/nsp12319T319delACA---22B.1.6210.000177
ORF1ab/nsp12319T319IaCaaTa22U.20.017544
ORF1ab/nsp12319T319SAcaTca110.055556
ORF1ab/nsp12319T319AAcAGcG11A0.000387
ORF1ab/nsp12319T319IaCaaTa11AY.10.000396
ORF1ab/nsp12319T319AAcaGca11AY.100.00053
ORF1ab/nsp12319T319IaCaaTa11AY.1010.00049
ORF1ab/nsp12319T319AAcaGca11AY.1030.000006
ORF1ab/nsp12319T319IaCaaTa11AY.1060.000335
ORF1ab/nsp12319T319IaCaaTa11AY.1100.000113
ORF1ab/nsp12319T319delACA---11AY.1110.000183
ORF1ab/nsp12319T319IaCaaTa11AY.1110.000183
ORF1ab/nsp12319T319TacAacG11AY.1140.000231
ORF1ab/nsp12319T319IaCaaTa11AY.1160.000287
ORF1ab/nsp12319T319AAcaGca11AY.116.10.000311
ORF1ab/nsp12319T319delACA---11AY.1170.000085
ORF1ab/nsp12319T319TacAacG11AY.1210.000135
ORF1ab/nsp12319T319IaCaaTa11AY.160.00038
ORF1ab/nsp12319T319IaCaaTa11AY.16.10.00047
ORF1ab/nsp12319T319IaCaaTa11AY.190.00114
ORF1ab/nsp12319T319delACA---11AY.190.00114
ORF1ab/nsp12319T319del1Aca-ca11AY.230.00007
ORF1ab/nsp12319T319AAcaGca11AY.250.000006
ORF1ab/nsp12319T319delACA---11AY.250.000006
ORF1ab/nsp12319T319AAcaGca11AY.290.000016
ORF1ab/nsp12319T319delACA---11AY.30.00001
ORF1ab/nsp12319T319AAcaGca11AY.3.10.000085
ORF1ab/nsp12319T319IaCaaTa11AY.300.000396
ORF1ab/nsp12319T319IaCaaTa11AY.330.000067
ORF1ab/nsp12319T319IaCaaTa11AY.34.10.00051
ORF1ab/nsp12319T319IaCaaTa11AY.380.000499
ORF1ab/nsp12319T319AAcaGca11AY.39.10.00004
ORF1ab/nsp12319T319del2ACa--a11AY.40.000002
ORF1ab/nsp12319T319SAcaTca11AY.40.000002
ORF1ab/nsp12319T319IaCaaTa11AY.4.30.000842
ORF1ab/nsp12319T319MaCAaTG11AY.430.000004
ORF1ab/nsp12319T319SAcaTca11AY.430.000004
ORF1ab/nsp12319T319TacAacG11AY.440.000006
ORF1ab/nsp12319T319delACA---11AY.46.60.000072
ORF1ab/nsp12319T319AAcaGca11AY.50.000021
ORF1ab/nsp12319T319IaCaaTa11AY.5.30.000337
ORF1ab/nsp12319T319delACA---11AY.520.000814
ORF1ab/nsp12319T319IaCaaTa11AY.530.000288
ORF1ab/nsp12319T319KaCaaAa11AY.610.000105
ORF1ab/nsp12319T319TacAacT11AY.610.000105
ORF1ab/nsp12319T319IaCaaTa11AY.620.000436
ORF1ab/nsp12319T319AAcAGcT11AY.670.000464
ORF1ab/nsp12319T319TacAacG11AY.680.000274
ORF1ab/nsp12319T319IaCaaTa11AY.70.000196
ORF1ab/nsp12319T319delACA---11AY.70.000196
ORF1ab/nsp12319T319delACA---11AY.710.000475
ORF1ab/nsp12319T319IaCaaTa11AY.710.000475
ORF1ab/nsp12319T319delACA---11AY.720.001361
ORF1ab/nsp12319T319AAcaGca11AY.730.000665
ORF1ab/nsp12319T319TacAacG11AY.740.000116
ORF1ab/nsp12319T319IaCaaTa11AY.740.000116
ORF1ab/nsp12319T319TacAacG11AY.75.10.00018
ORF1ab/nsp12319T319delACA---11AY.760.004831
ORF1ab/nsp12319T319IaCaaTa11AY.80.000606
ORF1ab/nsp12319T319KaCaaAa11AY.840.000437
ORF1ab/nsp12319T319delACA---11AY.850.000427
ORF1ab/nsp12319T319IaCaaTa11AY.90.000068
ORF1ab/nsp12319T319TacAacG11AY.9.20.000037
ORF1ab/nsp12319T319delACA---11AY.9.20.000037
ORF1ab/nsp12319T319IaCaaTa11AY.950.000761
ORF1ab/nsp12319T319MaCAaTG11AY.990.001049
ORF1ab/nsp12319T319TacAacG11AY.990.001049
ORF1ab/nsp12319T319KaCaaAa11B.10.000009
ORF1ab/nsp12319T319KaCaaAa11B.1.10.000018
ORF1ab/nsp12319T319IaCaaTa11B.1.1.10.000327
ORF1ab/nsp12319T319IaCaaTa11B.1.1.1010.01
ORF1ab/nsp12319T319IaCaaTa11B.1.1.1450.037037
ORF1ab/nsp12319T319TacAacG11B.1.1.1610.003534
ORF1ab/nsp12319T319IaCaaTa11B.1.1.2070.001182
ORF1ab/nsp12319T319delACA---11B.1.1.2210.010101
ORF1ab/nsp12319T319IaCaaTa11B.1.1.2240.014286
ORF1ab/nsp12319T319delACA---11B.1.1.2320.001815
ORF1ab/nsp12319T319IaCaaTa11B.1.1.2430.004082
ORF1ab/nsp12319T319IaCaaTa11B.1.1.2660.012195
ORF1ab/nsp12319T319SAcaTca11B.1.1.2770.000759
ORF1ab/nsp12319T319IaCaaTa11B.1.1.280.000311
ORF1ab/nsp12319T319del2aCAa--11B.1.1.3120.001912
ORF1ab/nsp12319T319IaCaaTa11B.1.1.3440.010753
ORF1ab/nsp12319T319delACA---11B.1.1.370.000193
ORF1ab/nsp12319T319IaCaaTa11B.1.1.3740.002375
ORF1ab/nsp12319T319IaCaaTa11B.1.1.3970.002252
ORF1ab/nsp12319T319IaCaaTa11B.1.1.4480.002033
ORF1ab/nsp12319T319IaCaaTa11B.1.1.4640.001473
ORF1ab/nsp12319T319IaCaaTa11B.1.1.50.008333
ORF1ab/nsp12319T319IaCaaTa11B.1.1.5170.006803
ORF1ab/nsp12319T319KaCaaAa11B.1.1.70.000001
ORF1ab/nsp12319T319RaCaaGa11B.1.1.70.000001
ORF1ab/nsp12319T319LACaTTa11B.1.1.70.000001
ORF1ab/nsp12319T319VACAGTG11B.1.1.70.000001
ORF1ab/nsp12319T319SAcaTca11B.1.1.70.000001
ORF1ab/nsp12319T319IaCaaTa11B.1.1280.000635
ORF1ab/nsp12319T319IaCaaTa11B.1.1470.000756
ORF1ab/nsp12319T319AAcaGca11B.1.1600.000031
ORF1ab/nsp12319T319TacAacG11B.1.1600.000031
ORF1ab/nsp12319T319IaCaaTa11B.1.160.280.002924
ORF1ab/nsp12319T319delACA---11B.1.177.160.000664
ORF1ab/nsp12319T319TacAacG11B.1.177.210.000076
ORF1ab/nsp12319T319IaCaaTa11B.1.177.210.000076
ORF1ab/nsp12319T319AAcaGca11B.1.177.440.000519
ORF1ab/nsp12319T319IaCaaTa11B.1.177.440.000519
ORF1ab/nsp12319T319delACA---11B.1.177.540.000606
ORF1ab/nsp12319T319IaCaaTa11B.1.177.560.000668
ORF1ab/nsp12319T319IaCaaTa11B.1.177.600.000218
ORF1ab/nsp12319T319delACA---11B.1.177.690.001484
ORF1ab/nsp12319T319IaCaaTa11B.1.177.720.00339
ORF1ab/nsp12319T319LACaCTa11B.1.177.730.000566
ORF1ab/nsp12319T319delACA---11B.1.177.760.002494
ORF1ab/nsp12319T319IaCaaTa11B.1.177.810.000189
ORF1ab/nsp12319T319IaCaaTa11B.1.2180.005155
ORF1ab/nsp12319T319AAcaGca11B.1.2210.000071
ORF1ab/nsp12319T319delACA---11B.1.230.006061
ORF1ab/nsp12319T319IaCaaTa11B.1.2370.004975
ORF1ab/nsp12319T319IaCaaTa11B.1.2430.00007
ORF1ab/nsp12319T319IaCaaTa11B.1.258.140.00098
ORF1ab/nsp12319T319IaCaaTa11B.1.258.30.001675
ORF1ab/nsp12319T319IaCaaTa11B.1.2600.003344
ORF1ab/nsp12319T319del1Aca-ca11B.1.3280.03125
ORF1ab/nsp12319T319IaCaaTa11B.1.36.10.00114
ORF1ab/nsp12319T319delACA---11B.1.36.170.000494
ORF1ab/nsp12319T319TacAacT11B.1.36.210.00216
ORF1ab/nsp12319T319IaCaaTa11B.1.36.290.000517
ORF1ab/nsp12319T319IaCaaTa11B.1.3850.010638
ORF1ab/nsp12319T319IaCaaTa11B.1.4000.000429
ORF1ab/nsp12319T319delACA---11B.1.4530.003236
ORF1ab/nsp12319T319IaCaaTa11B.1.4620.007246
ORF1ab/nsp12319T319TacAacC11B.1.466.20.000391
ORF1ab/nsp12319T319IaCaaTa11B.1.466.20.000391
ORF1ab/nsp12319T319TacAacG11B.1.5090.000866
ORF1ab/nsp12319T319TacAacT11B.1.5250.000113
ORF1ab/nsp12319T319delACA---11B.1.5250.000113
ORF1ab/nsp12319T319IaCaaTa11B.1.5610.000397
ORF1ab/nsp12319T319RaCaaGa11B.1.5690.014493
ORF1ab/nsp12319T319IaCaaTa11B.1.5950.000261
ORF1ab/nsp12319T319KaCaaAa11B.1.5960.000087
ORF1ab/nsp12319T319IaCaaTa11B.1.5990.00365
ORF1ab/nsp12319T319IaCaaTa11B.1.617.10.000129
ORF1ab/nsp12319T319delACA---11B.1.617.10.000129
ORF1ab/nsp12319T319IaCaaTa11B.1.6210.000089
ORF1ab/nsp12319T319KaCaaAa11B.1.6300.005236
ORF1ab/nsp12319T319IaCaaTa11B.1.6360.006711
ORF1ab/nsp12319T319IaCaaTa11B.450.003831
ORF1ab/nsp12319T319IaCaaTa11B.520.010101
ORF1ab/nsp12319T319AAcaGca11C.36.30.000567
ORF1ab/nsp12319T319IaCaaTa11C.36.30.000567
ORF1ab/nsp12319T319IaCaaTa11C.40.01
ORF1ab/nsp12319T319SAcaTca11P.10.000016
ORF1ab/nsp12319T319KaCaaAa11P.10.000016
ORF1ab/nsp12319T319TacAacG11P.10.000016
ORF1ab/nsp12319T319delACA---11P.1.10.000318
ORF1ab/nsp12319T319delACA---11P.1.100.000269
ORF1ab/nsp12319T319IaCaaTa11P.1.140.000048
ORF1ab/nsp12319T319IaCaaTa11Q.10.000126
ORF1ab/nsp12319T319delACA---11Q.20.000613
ORF1ab/nsp12319T319IaCaaTa11Q.30.000145
ORF1ab/nsp12319T319IaCaaTa11Q.80.000165
ORF1ab/nsp12319T319IaCaaTa11R.10.00009
ORF1ab/nsp12319T319IaCaaTa11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.