CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 311

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12311A311SA4703SnonsynGcaTca45724572114371-14373
ORF1ab/nsp12311A311AA4703AsyngcAgcG4603610.78478314371-14373
ORF1ab/nsp12311A311AA4703AsyngcAgcT460510.1108714371-14373
ORF1ab/nsp12311A311AA4703AsyngcAgcC460480.10434814371-14373
ORF1ab/nsp12311A311TA4703TnonsynGcaAca3283250.99085414371-14373
ORF1ab/nsp12311A311TA4703TnonsynGcAAcG32820.0060975614371-14373
ORF1ab/nsp12311A311TA4703TnonsynGcAAcC32810.0030487814371-14373
ORF1ab/nsp12311A311VA4703VnonsyngCagTa2322310.9956914371-14373
ORF1ab/nsp12311A311VA4703VnonsyngCAgTT23210.0043103414371-14373
ORF1ab/nsp12311A311delA4703deldelGCA---128128114371-14373
ORF1ab/nsp12311A311del1A4703del1delgcAgc-1370.53846214371-14373
ORF1ab/nsp12311A311del1A4703del1delGca-ca1360.46153814371-14373
ORF1ab/nsp12311A311PA4703PnonsynGcaCca12110.91666714371-14373
ORF1ab/nsp12311A311PA4703PnonsynGcACcT1210.083333314371-14373
ORF1ab/nsp12311A311EA4703EnonsyngCagAa1111114371-14373
ORF1ab/nsp12311A311IA4703InonsynGCaATa88114371-14373
ORF1ab/nsp12311A311LA4703LnonsynGCACTT840.514371-14373
ORF1ab/nsp12311A311LA4703LnonsynGCaTTa820.2514371-14373
ORF1ab/nsp12311A311LA4703LnonsynGCaCTa820.2514371-14373
ORF1ab/nsp12311A311FA4703FnonsynGCATTT44114371-14373
ORF1ab/nsp12311A311QA4703QnonsynGCaCAa33114371-14373
ORF1ab/nsp12311A311XA4703XnonsynGCaTAa33114371-14373
ORF1ab/nsp12311A311GA4703GnonsyngCAgGC310.33333314371-14373
ORF1ab/nsp12311A311GA4703GnonsyngCAgGT310.33333314371-14373
ORF1ab/nsp12311A311GA4703GnonsyngCagGa310.33333314371-14373
ORF1ab/nsp12311A311HA4703HnonsynGCACAT22114371-14373
ORF1ab/nsp12311A311YA4703YnonsynGCATAT22114371-14373
ORF1ab/nsp12311A311DA4703DnonsyngCAgAC210.514371-14373
ORF1ab/nsp12311A311DA4703DnonsyngCAgAT210.514371-14373
ORF1ab/nsp12311A311KA4703KnonsynGCaAAa11114371-14373

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12311A311SGcaTca45724572All0.000874
ORF1ab/nsp12311A311SGcaTca996996AY.40.00155
ORF1ab/nsp12311A311SGcaTca575575B.1.1.70.000515
ORF1ab/nsp12311A311SGcaTca575575B.1.617.20.002165
ORF1ab/nsp12311A311SGcaTca554554AY.430.002454
ORF1ab/nsp12311A311AgcAgcG361460All0.000069
ORF1ab/nsp12311A311AgcAgcT51460All0.00001
ORF1ab/nsp12311A311AgcAgcC48460All0.000009
ORF1ab/nsp12311A311SGcaTca418418B.1.1.3160.386679
ORF1ab/nsp12311A311TGcaAca325328All0.000062
ORF1ab/nsp12311A311TGcAAcG2328All0
ORF1ab/nsp12311A311TGcAAcC1328All0
ORF1ab/nsp12311A311VgCagTa231232All0.000044
ORF1ab/nsp12311A311VgCAgTT1232All0
ORF1ab/nsp12311A311AgcAgcG142150B.1.1.70.000127
ORF1ab/nsp12311A311AgcAgcT8150B.1.1.70.000007
ORF1ab/nsp12311A311SGcaTca129129AY.30.001283
ORF1ab/nsp12311A311delGCA---128128All0.000024
ORF1ab/nsp12311A311SGcaTca128128AY.420.005149
ORF1ab/nsp12311A311AgcAgcG70106AY.40.000109
ORF1ab/nsp12311A311AgcAgcT31106AY.40.000048
ORF1ab/nsp12311A311AgcAgcC5106AY.40.000008
ORF1ab/nsp12311A311SGcaTca9797AY.260.002746
ORF1ab/nsp12311A311SGcaTca8383AY.620.036166
ORF1ab/nsp12311A311delGCA---7171B.1.1.70.000064
ORF1ab/nsp12311A311SGcaTca6969R.21
ORF1ab/nsp12311A311TGcaAca6161A.2.50.030439
ORF1ab/nsp12311A311VgCagTa5555R.10.00495
ORF1ab/nsp12311A311AgcAgcG3451AY.30.000338
ORF1ab/nsp12311A311AgcAgcC1551AY.30.000149
ORF1ab/nsp12311A311AgcAgcT251AY.30.00002
ORF1ab/nsp12311A311TGcaAca5151B.1.1.70.000046
ORF1ab/nsp12311A311SGcaTca5050AY.440.000304
ORF1ab/nsp12311A311SGcaTca4848AY.390.001186
ORF1ab/nsp12311A311SGcaTca4343AY.90.002907
ORF1ab/nsp12311A311SGcaTca4141AY.1030.000255
ORF1ab/nsp12311A311TGcaAca4141AY.40.000064
ORF1ab/nsp12311A311TGcaAca4040B.1.177.210.003059
ORF1ab/nsp12311A311SGcaTca3838B.10.000348
ORF1ab/nsp12311A311SGcaTca3434AY.250.000205
ORF1ab/nsp12311A311AgcAgcG2833B.1.617.20.000105
ORF1ab/nsp12311A311AgcAgcT433B.1.617.20.000015
ORF1ab/nsp12311A311AgcAgcC133B.1.617.20.000004
ORF1ab/nsp12311A311SGcaTca2626AY.290.00041
ORF1ab/nsp12311A311VgCagTa2626B.1.1.70.000023
ORF1ab/nsp12311A311SGcaTca2525AY.1000.00115
ORF1ab/nsp12311A311SGcaTca2323AY.60.000946
ORF1ab/nsp12311A311SGcaTca2222AY.200.000855
ORF1ab/nsp12311A311VgCagTa2222B.1.617.20.000083
ORF1ab/nsp12311A311SGcaTca2121B.1.1600.000655
ORF1ab/nsp12311A311SGcaTca2121B.1.20.000185
ORF1ab/nsp12311A311AgcAgcG2020AY.610.002096
ORF1ab/nsp12311A311SGcaTca1919AY.460.001978
ORF1ab/nsp12311A311TGcaAca1919AY.470.000591
ORF1ab/nsp12311A311SGcaTca1919B.1.1.3450.826087
ORF1ab/nsp12311A311SGcaTca1919B.1.1.5190.000755
ORF1ab/nsp12311A311SGcaTca1919B.1.1770.00025
ORF1ab/nsp12311A311SGcaTca1919B.1.4290.000447
ORF1ab/nsp12311A311AgcAgcC1618AY.440.000097
ORF1ab/nsp12311A311AgcAgcG218AY.440.000012
ORF1ab/nsp12311A311SGcaTca1818B.1.10.000327
ORF1ab/nsp12311A311SGcaTca1818C.360.016393
ORF1ab/nsp12311A311SGcaTca1717AY.1200.000632
ORF1ab/nsp12311A311SGcaTca1717AY.230.001186
ORF1ab/nsp12311A311VgCagTa1515AY.250.00009
ORF1ab/nsp12311A311VgCagTa1515AY.40.000023
ORF1ab/nsp12311A311del1gcAgc-713All0.000001
ORF1ab/nsp12311A311del1Gca-ca613All0.000001
ORF1ab/nsp12311A311PGcaCca1112All0.000002
ORF1ab/nsp12311A311PGcACcT112All0
ORF1ab/nsp12311A311delGCA---1212AY.40.000019
ORF1ab/nsp12311A311AgcAgcG1212AY.75.10.002164
ORF1ab/nsp12311A311SGcaTca1212B.1.177.240.015544
ORF1ab/nsp12311A311SGcaTca1212B.1.3780.082192
ORF1ab/nsp12311A311EgCagAa1111All0.000002
ORF1ab/nsp12311A311VgCagTa1111AY.390.000272
ORF1ab/nsp12311A311TGcaAca1111AY.46.40.00181
ORF1ab/nsp12311A311SGcaTca1111AY.50.000227
ORF1ab/nsp12311A311SGcaTca1111B.1.177.860.002018
ORF1ab/nsp12311A311SGcaTca1111B.1.3510.000327
ORF1ab/nsp12311A311SGcaTca1111B.1.5260.000259
ORF1ab/nsp12311A311SGcaTca1010AY.1190.000353
ORF1ab/nsp12311A311SGcaTca1010AY.120.10.00321
ORF1ab/nsp12311A311SGcaTca1010AY.1210.001353
ORF1ab/nsp12311A311SGcaTca99A.190.084906
ORF1ab/nsp12311A311SGcaTca99AY.3.10.000767
ORF1ab/nsp12311A311SGcaTca99AY.330.000601
ORF1ab/nsp12311A311SGcaTca99AY.98.10.000436
ORF1ab/nsp12311A311AgcAgcG99B.1.36.220.01087
ORF1ab/nsp12311A311LGCACTT480.222222
ORF1ab/nsp12311A311LGCaTTa280.111111
ORF1ab/nsp12311A311LGCaCTa280.111111
ORF1ab/nsp12311A311IGCaATa88All0.000002
ORF1ab/nsp12311A311LGCACTT48All0.000001
ORF1ab/nsp12311A311LGCaTTa28All0
ORF1ab/nsp12311A311LGCaCTa28All0
ORF1ab/nsp12311A311VgCagTa88AY.440.000049
ORF1ab/nsp12311A311SGcaTca88B.1.1.2790.008969
ORF1ab/nsp12311A311TGcaAca88B.1.1950.040201
ORF1ab/nsp12311A311TGcaAca88B.1.617.20.00003
ORF1ab/nsp12311A311SGcaTca77AY.4.2.10.001043
ORF1ab/nsp12311A311SGcaTca77B.1.1.3910.059829
ORF1ab/nsp12311A311SGcaTca77P.10.00011
ORF1ab/nsp12311A311SGcaTca77Q.30.001015
ORF1ab/nsp12311A311SGcaTca77Q.80.001154
ORF1ab/nsp12311A311TGcaAca66AY.10.002374
ORF1ab/nsp12311A311VgCagTa66AY.1030.000037
ORF1ab/nsp12311A311TGcaAca66AY.1180.000376
ORF1ab/nsp12311A311SGcaTca66AY.29.10.001323
ORF1ab/nsp12311A311SGcaTca66AY.410.001764
ORF1ab/nsp12311A311delGCA---66AY.430.000027
ORF1ab/nsp12311A311VgCagTa66AY.430.000027
ORF1ab/nsp12311A311VgCagTa66B.1.10.000109
ORF1ab/nsp12311A311del1gcAgc-56B.1.1.70.000004
ORF1ab/nsp12311A311del1Gca-ca16B.1.1.70.000001
ORF1ab/nsp12311A311VgCagTa66B.1.258.170.000624
ORF1ab/nsp12311A311SGcaTca66C.370.000696
ORF1ab/nsp12311A311VgCagTa66P.10.000095
ORF1ab/nsp12311A311TGcaAca66P.10.000095
ORF1ab/nsp12311A311AgcAgcC66P.10.000095
ORF1ab/nsp12311A311TGcaAca55AY.1030.000031
ORF1ab/nsp12311A311SGcaTca55AY.5.40.001384
ORF1ab/nsp12311A311SGcaTca55AY.99.20.000461
ORF1ab/nsp12311A311SGcaTca55B.1.1.3060.002192
ORF1ab/nsp12311A311SGcaTca55B.1.1.3540.02193
ORF1ab/nsp12311A311IGCaATa55P.10.000079
ORF1ab/nsp12311A311FGCATTT440.222222
ORF1ab/nsp12311A311FGCATTT44All0.000001
ORF1ab/nsp12311A311SGcaTca44AY.1020.000106
ORF1ab/nsp12311A311SGcaTca44AY.1130.00057
ORF1ab/nsp12311A311delGCA---44AY.250.000024
ORF1ab/nsp12311A311AgcAgcG34AY.250.000018
ORF1ab/nsp12311A311AgcAgcC14AY.250.000006
ORF1ab/nsp12311A311SGcaTca44AY.39.10.000158
ORF1ab/nsp12311A311delGCA---44AY.4.50.00043
ORF1ab/nsp12311A311SGcaTca44AY.450.000487
ORF1ab/nsp12311A311SGcaTca44AY.910.002922
ORF1ab/nsp12311A311VgCagTa44B.10.000037
ORF1ab/nsp12311A311TGcaAca44B.1.10.000073
ORF1ab/nsp12311A311TGcaAca44B.1.1.1570.003653
ORF1ab/nsp12311A311TGcaAca44B.1.1.2220.000816
ORF1ab/nsp12311A311PGcaCca44B.1.1.70.000004
ORF1ab/nsp12311A311SGcaTca44B.1.360.000584
ORF1ab/nsp12311A311SGcaTca44B.1.4000.001716
ORF1ab/nsp12311A311GgCagGa130.055556
ORF1ab/nsp12311A311GgCAgGC130.055556
ORF1ab/nsp12311A311GgCAgGT130.055556
ORF1ab/nsp12311A311XGCaTAa33All0.000001
ORF1ab/nsp12311A311QGCaCAa33All0.000001
ORF1ab/nsp12311A311GgCAgGT13All0
ORF1ab/nsp12311A311GgCAgGC13All0
ORF1ab/nsp12311A311GgCagGa13All0
ORF1ab/nsp12311A311SGcaTca33AY.1090.002219
ORF1ab/nsp12311A311SGcaTca33AY.1110.000549
ORF1ab/nsp12311A311SGcaTca33AY.1170.000254
ORF1ab/nsp12311A311VgCagTa33AY.290.000047
ORF1ab/nsp12311A311SGcaTca33AY.360.000445
ORF1ab/nsp12311A311SGcaTca33AY.4.20.000065
ORF1ab/nsp12311A311SGcaTca33AY.46.60.000217
ORF1ab/nsp12311A311SGcaTca33AY.5.30.001012
ORF1ab/nsp12311A311VgCagTa33AY.570.001969
ORF1ab/nsp12311A311SGcaTca33AY.730.001996
ORF1ab/nsp12311A311SGcaTca33AY.850.001282
ORF1ab/nsp12311A311SGcaTca33B0.000383
ORF1ab/nsp12311A311SGcaTca33B.1.1.2940.003797
ORF1ab/nsp12311A311AgcAgcG33B.1.1.3170.001235
ORF1ab/nsp12311A311delGCA---33B.1.1770.00004
ORF1ab/nsp12311A311TGcaAca33B.1.20.000026
ORF1ab/nsp12311A311SGcaTca33B.1.2210.000213
ORF1ab/nsp12311A311SGcaTca33B.1.2340.000396
ORF1ab/nsp12311A311AgcAgcG33B.1.3510.000089
ORF1ab/nsp12311A311SGcaTca33B.1.36.290.001552
ORF1ab/nsp12311A311AgcAgcG33B.1.4270.000151
ORF1ab/nsp12311A311SGcaTca33B.1.4990.003151
ORF1ab/nsp12311A311SGcaTca33B.1.5960.000261
ORF1ab/nsp12311A311SGcaTca33B.1.617.10.000387
ORF1ab/nsp12311A311SGcaTca33B.400.001093
ORF1ab/nsp12311A311SGcaTca33P.1.140.000143
ORF1ab/nsp12311A311XGCaTAa220.111111
ORF1ab/nsp12311A311YGCATAT220.111111
ORF1ab/nsp12311A311HGCACAT220.111111
ORF1ab/nsp12311A311QGCaCAa220.111111
ORF1ab/nsp12311A311AgcAgcT120.055556
ORF1ab/nsp12311A311DgCAgAT120.055556
ORF1ab/nsp12311A311DgCAgAC120.055556
ORF1ab/nsp12311A311AgcAgcC120.055556
ORF1ab/nsp12311A311AgcAgcC22A0.000774
ORF1ab/nsp12311A311HGCACAT22All0
ORF1ab/nsp12311A311YGCATAT22All0
ORF1ab/nsp12311A311DgCAgAT12All0
ORF1ab/nsp12311A311DgCAgAC12All0
ORF1ab/nsp12311A311TGcaAca22AY.1000.000092
ORF1ab/nsp12311A311AgcAgcG22AY.1030.000012
ORF1ab/nsp12311A311SGcaTca22AY.1050.001286
ORF1ab/nsp12311A311VgCagTa22AY.1140.000462
ORF1ab/nsp12311A311SGcaTca22AY.1160.000574
ORF1ab/nsp12311A311TGcaAca22AY.1210.000271
ORF1ab/nsp12311A311TGcaAca22AY.140.000176
ORF1ab/nsp12311A311VgCagTa22AY.200.000078
ORF1ab/nsp12311A311TGcaAca22AY.260.000057
ORF1ab/nsp12311A311SGcaTca22AY.270.000129
ORF1ab/nsp12311A311AgcAgcG22AY.390.000049
ORF1ab/nsp12311A311TGcaAca22AY.39.10.000079
ORF1ab/nsp12311A311TGcAAcG12AY.430.000004
ORF1ab/nsp12311A311TGcaAca12AY.430.000004
ORF1ab/nsp12311A311TGcaAca22AY.440.000012
ORF1ab/nsp12311A311SGcaTca22AY.610.00021
ORF1ab/nsp12311A311SGcaTca22AY.75.10.000361
ORF1ab/nsp12311A311VgCAgTT12AY.840.000437
ORF1ab/nsp12311A311VgCagTa12AY.840.000437
ORF1ab/nsp12311A311SGcaTca22AY.9.20.000073
ORF1ab/nsp12311A311AgcAgcG22AY.98.10.000097
ORF1ab/nsp12311A311VgCagTa22AY.99.20.000184
ORF1ab/nsp12311A311TGcaAca22AY.99.20.000184
ORF1ab/nsp12311A311IGCaATa22AY.99.20.000184
ORF1ab/nsp12311A311AgcAgcT22B.10.000018
ORF1ab/nsp12311A311PGcaCca22B.10.000018
ORF1ab/nsp12311A311delGCA---22B.10.000018
ORF1ab/nsp12311A311AgcAgcG22B.1.10.000036
ORF1ab/nsp12311A311EgCagAa22B.1.10.000036
ORF1ab/nsp12311A311SGcaTca22B.1.1.2200.003717
ORF1ab/nsp12311A311VgCagTa22B.1.1.4090.005666
ORF1ab/nsp12311A311SGcaTca22B.1.1.4320.002532
ORF1ab/nsp12311A311SGcaTca22B.1.1.4480.004065
ORF1ab/nsp12311A311EgCagAa22B.1.1.70.000002
ORF1ab/nsp12311A311TGcaAca22B.1.1770.000026
ORF1ab/nsp12311A311SGcaTca22B.1.177.350.001382
ORF1ab/nsp12311A311TGcaAca22B.1.177.620.002384
ORF1ab/nsp12311A311AgcAgcG22B.1.177.750.002081
ORF1ab/nsp12311A311SGcaTca22B.1.177.850.01087
ORF1ab/nsp12311A311AgcAgcT22B.1.2430.000139
ORF1ab/nsp12311A311SGcaTca22B.1.2580.000133
ORF1ab/nsp12311A311SGcaTca22B.1.351.20.000605
ORF1ab/nsp12311A311SGcaTca22B.1.3690.00057
ORF1ab/nsp12311A311AgcAgcG22B.1.4010.016393
ORF1ab/nsp12311A311TGcaAca22B.1.5260.000047
ORF1ab/nsp12311A311SGcaTca22B.1.5890.015152
ORF1ab/nsp12311A311SGcaTca22B.1.6090.000959
ORF1ab/nsp12311A311SGcaTca22B.1.6210.000177
ORF1ab/nsp12311A311delGCA---22B.1.6210.000177
ORF1ab/nsp12311A311AgcAgcG22C.370.000232
ORF1ab/nsp12311A311AgcAgcG22P.1.150.000465
ORF1ab/nsp12311A311EgCagAa110.055556
ORF1ab/nsp12311A311TGcAAcC11A0.000387
ORF1ab/nsp12311A311SGcaTca11A.23.10.000704
ORF1ab/nsp12311A311SGcaTca11AD.20.000219
ORF1ab/nsp12311A311KGCaAAa11All0
ORF1ab/nsp12311A311AgcAgcG11AY.1000.000046
ORF1ab/nsp12311A311VgCagTa11AY.1010.00049
ORF1ab/nsp12311A311SGcaTca11AY.1010.00049
ORF1ab/nsp12311A311AgcAgcG11AY.1020.000027
ORF1ab/nsp12311A311VgCagTa11AY.1020.000027
ORF1ab/nsp12311A311PGcaCca11AY.1070.000466
ORF1ab/nsp12311A311SGcaTca11AY.1070.000466
ORF1ab/nsp12311A311delGCA---11AY.1110.000183
ORF1ab/nsp12311A311SGcaTca11AY.1140.000231
ORF1ab/nsp12311A311SGcaTca11AY.1180.000063
ORF1ab/nsp12311A311VgCagTa11AY.1200.000037
ORF1ab/nsp12311A311AgcAgcG11AY.16.10.00047
ORF1ab/nsp12311A311delGCA---11AY.190.00114
ORF1ab/nsp12311A311AgcAgcG11AY.200.000039
ORF1ab/nsp12311A311VgCagTa11AY.240.000431
ORF1ab/nsp12311A311TGcaAca11AY.250.000006
ORF1ab/nsp12311A311PGcaCca11AY.250.000006
ORF1ab/nsp12311A311del1Gca-ca11AY.250.000006
ORF1ab/nsp12311A311TGcaAca11AY.290.000016
ORF1ab/nsp12311A311delGCA---11AY.290.000016
ORF1ab/nsp12311A311AgcAgcG11AY.290.000016
ORF1ab/nsp12311A311delGCA---11AY.30.00001
ORF1ab/nsp12311A311TGcaAca11AY.30.00001
ORF1ab/nsp12311A311TGcaAca11AY.3.10.000085
ORF1ab/nsp12311A311TGcaAca11AY.330.000067
ORF1ab/nsp12311A311AgcAgcG11AY.34.10.00051
ORF1ab/nsp12311A311VgCagTa11AY.350.000233
ORF1ab/nsp12311A311TGcaAca11AY.390.000025
ORF1ab/nsp12311A311EgCagAa11AY.40.000002
ORF1ab/nsp12311A311SGcaTca11AY.4.50.000107
ORF1ab/nsp12311A311del1gcAgc-11AY.4.50.000107
ORF1ab/nsp12311A311SGcaTca11AY.400.000964
ORF1ab/nsp12311A311AgcAgcG11AY.430.000004
ORF1ab/nsp12311A311PGcaCca11AY.440.000006
ORF1ab/nsp12311A311TGcaAca11AY.460.000104
ORF1ab/nsp12311A311VgCagTa11AY.460.000104
ORF1ab/nsp12311A311AgcAgcG11AY.460.000104
ORF1ab/nsp12311A311AgcAgcG11AY.46.20.000635
ORF1ab/nsp12311A311SGcaTca11AY.46.40.000165
ORF1ab/nsp12311A311AgcAgcG11AY.470.000031
ORF1ab/nsp12311A311VgCagTa11AY.470.000031
ORF1ab/nsp12311A311AgcAgcG11AY.50.000021
ORF1ab/nsp12311A311SGcaTca11AY.520.000814
ORF1ab/nsp12311A311SGcaTca11AY.530.000288
ORF1ab/nsp12311A311SGcaTca11AY.540.000095
ORF1ab/nsp12311A311VgCagTa11AY.550.000917
ORF1ab/nsp12311A311SGcaTca11AY.580.000907
ORF1ab/nsp12311A311EgCagAa11AY.60.000041
ORF1ab/nsp12311A311TGcaAca11AY.640.000595
ORF1ab/nsp12311A311PGcACcT11AY.670.000464
ORF1ab/nsp12311A311AgcAgcG11AY.670.000464
ORF1ab/nsp12311A311SGcaTca11AY.670.000464
ORF1ab/nsp12311A311delGCA---11AY.70.000196
ORF1ab/nsp12311A311delGCA---11AY.720.001361
ORF1ab/nsp12311A311SGcaTca11AY.750.000056
ORF1ab/nsp12311A311SGcaTca11AY.820.001357
ORF1ab/nsp12311A311AgcAgcG11AY.820.001357
ORF1ab/nsp12311A311TGcaAca11AY.840.000437
ORF1ab/nsp12311A311delGCA---11AY.850.000427
ORF1ab/nsp12311A311SGcaTca11AY.890.004902
ORF1ab/nsp12311A311SGcaTca11AY.9.10.000084
ORF1ab/nsp12311A311VgCagTa11AY.9.10.000084
ORF1ab/nsp12311A311VgCagTa11AY.9.20.000037
ORF1ab/nsp12311A311delGCA---11AY.9.20.000037
ORF1ab/nsp12311A311SGcaTca11AY.920.000287
ORF1ab/nsp12311A311SGcaTca11AY.980.000079
ORF1ab/nsp12311A311TGcaAca11AY.980.000079
ORF1ab/nsp12311A311VgCagTa11AY.98.10.000048
ORF1ab/nsp12311A311SGcaTca11AY.990.001049
ORF1ab/nsp12311A311TGcAAcG11AY.990.001049
ORF1ab/nsp12311A311AgcAgcC11AY.99.20.000092
ORF1ab/nsp12311A311TGcaAca11B0.000128
ORF1ab/nsp12311A311TGcaAca11B.10.000009
ORF1ab/nsp12311A311XGCaTAa11B.1.10.000018
ORF1ab/nsp12311A311TGcaAca11B.1.1.10.000327
ORF1ab/nsp12311A311VgCagTa11B.1.1.1530.001095
ORF1ab/nsp12311A311SGcaTca11B.1.1.1740.003378
ORF1ab/nsp12311A311TGcaAca11B.1.1.1760.000439
ORF1ab/nsp12311A311TGcaAca11B.1.1.2160.00089
ORF1ab/nsp12311A311delGCA---11B.1.1.2210.010101
ORF1ab/nsp12311A311delGCA---11B.1.1.2320.001815
ORF1ab/nsp12311A311TGcaAca11B.1.1.2770.000759
ORF1ab/nsp12311A311TGcaAca11B.1.1.2840.000107
ORF1ab/nsp12311A311SGcaTca11B.1.1.3040.002809
ORF1ab/nsp12311A311AgcAgcG11B.1.1.3060.000438
ORF1ab/nsp12311A311VgCagTa11B.1.1.3070.002532
ORF1ab/nsp12311A311TGcaAca11B.1.1.3350.012987
ORF1ab/nsp12311A311SGcaTca11B.1.1.3400.045455
ORF1ab/nsp12311A311delGCA---11B.1.1.370.000193
ORF1ab/nsp12311A311SGcaTca11B.1.1.3930.111111
ORF1ab/nsp12311A311VgCagTa11B.1.1.4340.000349
ORF1ab/nsp12311A311SGcaTca11B.1.1.5170.006803
ORF1ab/nsp12311A311SGcaTca11B.1.1.610.008772
ORF1ab/nsp12311A311SGcaTca11B.1.1.700.000341
ORF1ab/nsp12311A311del1Gca-ca11B.1.1.700.000341
ORF1ab/nsp12311A311SGcaTca11B.1.110.30.000718
ORF1ab/nsp12311A311PGcaCca11B.1.1260.001276
ORF1ab/nsp12311A311VgCagTa11B.1.1280.000635
ORF1ab/nsp12311A311del1Gca-ca11B.1.1600.000031
ORF1ab/nsp12311A311TGcaAca11B.1.1600.000031
ORF1ab/nsp12311A311AgcAgcT11B.1.160.160.000929
ORF1ab/nsp12311A311del1Gca-ca11B.1.1770.000013
ORF1ab/nsp12311A311VgCagTa11B.1.1770.000013
ORF1ab/nsp12311A311delGCA---11B.1.177.160.000664
ORF1ab/nsp12311A311delGCA---11B.1.177.180.00116
ORF1ab/nsp12311A311SGcaTca11B.1.177.420.000894
ORF1ab/nsp12311A311delGCA---11B.1.177.540.000606
ORF1ab/nsp12311A311SGcaTca11B.1.177.560.000668
ORF1ab/nsp12311A311delGCA---11B.1.177.690.001484
ORF1ab/nsp12311A311delGCA---11B.1.177.760.002494
ORF1ab/nsp12311A311VgCagTa11B.1.177.820.000477
ORF1ab/nsp12311A311del1gcAgc-11B.1.20.000009
ORF1ab/nsp12311A311VgCagTa11B.1.20.000009
ORF1ab/nsp12311A311EgCagAa11B.1.20.000009
ORF1ab/nsp12311A311delGCA---11B.1.20.000009
ORF1ab/nsp12311A311TGcaAca11B.1.220.001318
ORF1ab/nsp12311A311TGcaAca11B.1.2210.000071
ORF1ab/nsp12311A311SGcaTca11B.1.221.10.002907
ORF1ab/nsp12311A311delGCA---11B.1.230.006061
ORF1ab/nsp12311A311VgCagTa11B.1.2400.000216
ORF1ab/nsp12311A311VgCagTa11B.1.2410.000812
ORF1ab/nsp12311A311SGcaTca11B.1.2430.00007
ORF1ab/nsp12311A311VgCagTa11B.1.2580.000067
ORF1ab/nsp12311A311SGcaTca11B.1.3110.000275
ORF1ab/nsp12311A311AgcAgcG11B.1.3110.000275
ORF1ab/nsp12311A311TGcaAca11B.1.360.000146
ORF1ab/nsp12311A311VgCagTa11B.1.360.000146
ORF1ab/nsp12311A311delGCA---11B.1.36.170.000494
ORF1ab/nsp12311A311SGcaTca11B.1.36.220.001208
ORF1ab/nsp12311A311delGCA---11B.1.36.290.000517
ORF1ab/nsp12311A311AgcAgcG11B.1.3670.000792
ORF1ab/nsp12311A311SGcaTca11B.1.3800.006623
ORF1ab/nsp12311A311TGcaAca11B.1.4000.000429
ORF1ab/nsp12311A311SGcaTca11B.1.4160.001269
ORF1ab/nsp12311A311TGcaAca11B.1.4330.003195
ORF1ab/nsp12311A311SGcaTca11B.1.438.10.000107
ORF1ab/nsp12311A311SGcaTca11B.1.4680.005714
ORF1ab/nsp12311A311SGcaTca11B.1.5170.000427
ORF1ab/nsp12311A311delGCA---11B.1.5250.000113
ORF1ab/nsp12311A311VgCagTa11B.1.5260.000024
ORF1ab/nsp12311A311SGcaTca11B.1.5400.009709
ORF1ab/nsp12311A311VgCagTa11B.1.5580.004566
ORF1ab/nsp12311A311VgCagTa11B.1.5950.000261
ORF1ab/nsp12311A311TGcaAca11B.1.5960.000087
ORF1ab/nsp12311A311del1Gca-ca11B.1.5960.000087
ORF1ab/nsp12311A311EgCagAa11B.1.5960.000087
ORF1ab/nsp12311A311SGcaTca11B.1.6000.005848
ORF1ab/nsp12311A311TGcaAca11B.1.617.10.000129
ORF1ab/nsp12311A311QGCaCAa11B.1.617.20.000004
ORF1ab/nsp12311A311PGcaCca11B.1.617.20.000004
ORF1ab/nsp12311A311EgCagAa11B.1.617.20.000004
ORF1ab/nsp12311A311SGcaTca11B.1.6370.000073
ORF1ab/nsp12311A311SGcaTca11B.40.002208
ORF1ab/nsp12311A311SGcaTca11B.4.70.010101
ORF1ab/nsp12311A311SGcaTca11B.460.020833
ORF1ab/nsp12311A311KGCaAAa11B.6.60.000889
ORF1ab/nsp12311A311SGcaTca11C.1.20.004255
ORF1ab/nsp12311A311SGcaTca11C.110.010638
ORF1ab/nsp12311A311SGcaTca11C.140.004329
ORF1ab/nsp12311A311SGcaTca11C.180.002591
ORF1ab/nsp12311A311SGcaTca11C.30.007634
ORF1ab/nsp12311A311VgCagTa11C.350.000774
ORF1ab/nsp12311A311SGcaTca11C.36.30.000567
ORF1ab/nsp12311A311TGcaAca11C.370.000116
ORF1ab/nsp12311A311VgCagTa11C.37.10.002618
ORF1ab/nsp12311A311VgCagTa11D.20.000075
ORF1ab/nsp12311A311EgCagAa11D.20.000075
ORF1ab/nsp12311A311SGcaTca11D.20.000075
ORF1ab/nsp12311A311VgCagTa11D.30.005917
ORF1ab/nsp12311A311delGCA---11P.1.10.000318
ORF1ab/nsp12311A311delGCA---11P.1.100.000269
ORF1ab/nsp12311A311VgCagTa11P.1.130.000898
ORF1ab/nsp12311A311SGcaTca11P.1.150.000232
ORF1ab/nsp12311A311IGCaATa11P.1.70.000319
ORF1ab/nsp12311A311SGcaTca11P.20.000187
ORF1ab/nsp12311A311SGcaTca11P.30.001595
ORF1ab/nsp12311A311delGCA---11Q.20.000613
ORF1ab/nsp12311A311SGcaTca11R.10.00009