CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 311 | A311S | A4703S | nonsyn | Gca | Tca | 4572 | 4572 | 1 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311A | A4703A | syn | gcA | gcG | 460 | 361 | 0.784783 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311A | A4703A | syn | gcA | gcT | 460 | 51 | 0.11087 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311A | A4703A | syn | gcA | gcC | 460 | 48 | 0.104348 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311T | A4703T | nonsyn | Gca | Aca | 328 | 325 | 0.990854 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311T | A4703T | nonsyn | GcA | AcG | 328 | 2 | 0.00609756 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311T | A4703T | nonsyn | GcA | AcC | 328 | 1 | 0.00304878 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311V | A4703V | nonsyn | gCa | gTa | 232 | 231 | 0.99569 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311V | A4703V | nonsyn | gCA | gTT | 232 | 1 | 0.00431034 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311del | A4703del | del | GCA | --- | 128 | 128 | 1 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311del1 | A4703del1 | del | gcA | gc- | 13 | 7 | 0.538462 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311del1 | A4703del1 | del | Gca | -ca | 13 | 6 | 0.461538 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311P | A4703P | nonsyn | Gca | Cca | 12 | 11 | 0.916667 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311P | A4703P | nonsyn | GcA | CcT | 12 | 1 | 0.0833333 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311E | A4703E | nonsyn | gCa | gAa | 11 | 11 | 1 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311I | A4703I | nonsyn | GCa | ATa | 8 | 8 | 1 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311L | A4703L | nonsyn | GCA | CTT | 8 | 4 | 0.5 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311L | A4703L | nonsyn | GCa | TTa | 8 | 2 | 0.25 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311L | A4703L | nonsyn | GCa | CTa | 8 | 2 | 0.25 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311F | A4703F | nonsyn | GCA | TTT | 4 | 4 | 1 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311Q | A4703Q | nonsyn | GCa | CAa | 3 | 3 | 1 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311X | A4703X | nonsyn | GCa | TAa | 3 | 3 | 1 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311G | A4703G | nonsyn | gCA | gGC | 3 | 1 | 0.333333 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311G | A4703G | nonsyn | gCA | gGT | 3 | 1 | 0.333333 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311G | A4703G | nonsyn | gCa | gGa | 3 | 1 | 0.333333 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311H | A4703H | nonsyn | GCA | CAT | 2 | 2 | 1 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311Y | A4703Y | nonsyn | GCA | TAT | 2 | 2 | 1 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311D | A4703D | nonsyn | gCA | gAC | 2 | 1 | 0.5 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311D | A4703D | nonsyn | gCA | gAT | 2 | 1 | 0.5 | 14371-14373 |
ORF1ab/nsp12 | 311 | A311K | A4703K | nonsyn | GCa | AAa | 1 | 1 | 1 | 14371-14373 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 4572 | 4572 | All | 0.000874 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 996 | 996 | AY.4 | 0.00155 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 575 | 575 | B.1.1.7 | 0.000515 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 575 | 575 | B.1.617.2 | 0.002165 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 554 | 554 | AY.43 | 0.002454 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 361 | 460 | All | 0.000069 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcT | 51 | 460 | All | 0.00001 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcC | 48 | 460 | All | 0.000009 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 418 | 418 | B.1.1.316 | 0.386679 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 325 | 328 | All | 0.000062 |
ORF1ab/nsp12 | 311 | A311T | GcA | AcG | 2 | 328 | All | 0 |
ORF1ab/nsp12 | 311 | A311T | GcA | AcC | 1 | 328 | All | 0 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 231 | 232 | All | 0.000044 |
ORF1ab/nsp12 | 311 | A311V | gCA | gTT | 1 | 232 | All | 0 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 142 | 150 | B.1.1.7 | 0.000127 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcT | 8 | 150 | B.1.1.7 | 0.000007 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 129 | 129 | AY.3 | 0.001283 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 128 | 128 | All | 0.000024 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 128 | 128 | AY.42 | 0.005149 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 70 | 106 | AY.4 | 0.000109 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcT | 31 | 106 | AY.4 | 0.000048 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcC | 5 | 106 | AY.4 | 0.000008 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 97 | 97 | AY.26 | 0.002746 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 83 | 83 | AY.62 | 0.036166 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 71 | 71 | B.1.1.7 | 0.000064 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 69 | 69 | R.2 | 1 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 61 | 61 | A.2.5 | 0.030439 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 55 | 55 | R.1 | 0.00495 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 34 | 51 | AY.3 | 0.000338 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcC | 15 | 51 | AY.3 | 0.000149 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcT | 2 | 51 | AY.3 | 0.00002 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 51 | 51 | B.1.1.7 | 0.000046 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 50 | 50 | AY.44 | 0.000304 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 48 | 48 | AY.39 | 0.001186 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 43 | 43 | AY.9 | 0.002907 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 41 | 41 | AY.103 | 0.000255 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 41 | 41 | AY.4 | 0.000064 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 40 | 40 | B.1.177.21 | 0.003059 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 38 | 38 | B.1 | 0.000348 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 34 | 34 | AY.25 | 0.000205 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 28 | 33 | B.1.617.2 | 0.000105 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcT | 4 | 33 | B.1.617.2 | 0.000015 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcC | 1 | 33 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 26 | 26 | AY.29 | 0.00041 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 26 | 26 | B.1.1.7 | 0.000023 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 25 | 25 | AY.100 | 0.00115 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 23 | 23 | AY.6 | 0.000946 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 22 | 22 | AY.20 | 0.000855 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 22 | 22 | B.1.617.2 | 0.000083 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 21 | 21 | B.1.160 | 0.000655 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 21 | 21 | B.1.2 | 0.000185 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 20 | 20 | AY.61 | 0.002096 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 19 | 19 | AY.46 | 0.001978 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 19 | 19 | AY.47 | 0.000591 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 19 | 19 | B.1.1.345 | 0.826087 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 19 | 19 | B.1.1.519 | 0.000755 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 19 | 19 | B.1.177 | 0.00025 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 19 | 19 | B.1.429 | 0.000447 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcC | 16 | 18 | AY.44 | 0.000097 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 2 | 18 | AY.44 | 0.000012 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 18 | 18 | B.1.1 | 0.000327 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 18 | 18 | C.36 | 0.016393 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 17 | 17 | AY.120 | 0.000632 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 17 | 17 | AY.23 | 0.001186 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 15 | 15 | AY.25 | 0.00009 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 15 | 15 | AY.4 | 0.000023 |
ORF1ab/nsp12 | 311 | A311del1 | gcA | gc- | 7 | 13 | All | 0.000001 |
ORF1ab/nsp12 | 311 | A311del1 | Gca | -ca | 6 | 13 | All | 0.000001 |
ORF1ab/nsp12 | 311 | A311P | Gca | Cca | 11 | 12 | All | 0.000002 |
ORF1ab/nsp12 | 311 | A311P | GcA | CcT | 1 | 12 | All | 0 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 12 | 12 | AY.4 | 0.000019 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 12 | 12 | AY.75.1 | 0.002164 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 12 | 12 | B.1.177.24 | 0.015544 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 12 | 12 | B.1.378 | 0.082192 |
ORF1ab/nsp12 | 311 | A311E | gCa | gAa | 11 | 11 | All | 0.000002 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 11 | 11 | AY.46.4 | 0.00181 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 11 | 11 | AY.5 | 0.000227 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 11 | 11 | B.1.177.86 | 0.002018 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 11 | 11 | B.1.351 | 0.000327 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 11 | 11 | B.1.526 | 0.000259 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 10 | 10 | AY.119 | 0.000353 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 10 | 10 | AY.120.1 | 0.00321 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 10 | 10 | AY.121 | 0.001353 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 9 | 9 | A.19 | 0.084906 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 9 | 9 | AY.3.1 | 0.000767 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 9 | 9 | AY.33 | 0.000601 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 9 | 9 | AY.98.1 | 0.000436 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 9 | 9 | B.1.36.22 | 0.01087 |
ORF1ab/nsp12 | 311 | A311L | GCA | CTT | 4 | 8 | 0.222222 | |
ORF1ab/nsp12 | 311 | A311L | GCa | TTa | 2 | 8 | 0.111111 | |
ORF1ab/nsp12 | 311 | A311L | GCa | CTa | 2 | 8 | 0.111111 | |
ORF1ab/nsp12 | 311 | A311I | GCa | ATa | 8 | 8 | All | 0.000002 |
ORF1ab/nsp12 | 311 | A311L | GCA | CTT | 4 | 8 | All | 0.000001 |
ORF1ab/nsp12 | 311 | A311L | GCa | TTa | 2 | 8 | All | 0 |
ORF1ab/nsp12 | 311 | A311L | GCa | CTa | 2 | 8 | All | 0 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 8 | 8 | B.1.1.279 | 0.008969 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 8 | 8 | B.1.195 | 0.040201 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 7 | 7 | AY.4.2.1 | 0.001043 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 7 | 7 | B.1.1.391 | 0.059829 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 7 | 7 | Q.3 | 0.001015 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 7 | 7 | Q.8 | 0.001154 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 6 | 6 | AY.1 | 0.002374 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 6 | 6 | AY.29.1 | 0.001323 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 6 | 6 | AY.41 | 0.001764 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp12 | 311 | A311del1 | gcA | gc- | 5 | 6 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 311 | A311del1 | Gca | -ca | 1 | 6 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 6 | 6 | B.1.258.17 | 0.000624 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcC | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 5 | 5 | AY.5.4 | 0.001384 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 5 | 5 | B.1.1.306 | 0.002192 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 5 | 5 | B.1.1.354 | 0.02193 |
ORF1ab/nsp12 | 311 | A311I | GCa | ATa | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp12 | 311 | A311F | GCA | TTT | 4 | 4 | 0.222222 | |
ORF1ab/nsp12 | 311 | A311F | GCA | TTT | 4 | 4 | All | 0.000001 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 3 | 4 | AY.25 | 0.000018 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcC | 1 | 4 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 4 | 4 | AY.91 | 0.002922 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 4 | 4 | B.1.1.157 | 0.003653 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp12 | 311 | A311P | Gca | Cca | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 4 | 4 | B.1.400 | 0.001716 |
ORF1ab/nsp12 | 311 | A311G | gCa | gGa | 1 | 3 | 0.055556 | |
ORF1ab/nsp12 | 311 | A311G | gCA | gGC | 1 | 3 | 0.055556 | |
ORF1ab/nsp12 | 311 | A311G | gCA | gGT | 1 | 3 | 0.055556 | |
ORF1ab/nsp12 | 311 | A311X | GCa | TAa | 3 | 3 | All | 0.000001 |
ORF1ab/nsp12 | 311 | A311Q | GCa | CAa | 3 | 3 | All | 0.000001 |
ORF1ab/nsp12 | 311 | A311G | gCA | gGT | 1 | 3 | All | 0 |
ORF1ab/nsp12 | 311 | A311G | gCA | gGC | 1 | 3 | All | 0 |
ORF1ab/nsp12 | 311 | A311G | gCa | gGa | 1 | 3 | All | 0 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 3 | 3 | AY.57 | 0.001969 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 3 | 3 | AY.73 | 0.001996 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 3 | 3 | AY.85 | 0.001282 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 3 | 3 | B | 0.000383 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 3 | 3 | B.1.499 | 0.003151 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 3 | 3 | B.40 | 0.001093 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp12 | 311 | A311X | GCa | TAa | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 311 | A311Y | GCA | TAT | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 311 | A311H | GCA | CAT | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 311 | A311Q | GCa | CAa | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 311 | A311A | gcA | gcT | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 311 | A311D | gCA | gAT | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 311 | A311D | gCA | gAC | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 311 | A311A | gcA | gcC | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 311 | A311A | gcA | gcC | 2 | 2 | A | 0.000774 |
ORF1ab/nsp12 | 311 | A311H | GCA | CAT | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 311 | A311Y | GCA | TAT | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 311 | A311D | gCA | gAT | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 311 | A311D | gCA | gAC | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp12 | 311 | A311T | GcA | AcG | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp12 | 311 | A311V | gCA | gTT | 1 | 2 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 2 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp12 | 311 | A311I | GCa | ATa | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcT | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 311 | A311P | Gca | Cca | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 311 | A311E | gCa | gAa | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 2 | 2 | B.1.1.448 | 0.004065 |
ORF1ab/nsp12 | 311 | A311E | gCa | gAa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 2 | 2 | B.1.177.35 | 0.001382 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 2 | 2 | B.1.177.62 | 0.002384 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 2 | 2 | B.1.177.75 | 0.002081 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 2 | 2 | B.1.177.85 | 0.01087 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcT | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 2 | 2 | B.1.401 | 0.016393 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 2 | 2 | B.1.589 | 0.015152 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp12 | 311 | A311E | gCa | gAa | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 311 | A311T | GcA | AcC | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp12 | 311 | A311K | GCa | AAa | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 311 | A311P | Gca | Cca | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 311 | A311P | Gca | Cca | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 311 | A311del1 | Gca | -ca | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 311 | A311E | gCa | gAa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp12 | 311 | A311del1 | gcA | gc- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 311 | A311P | Gca | Cca | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp12 | 311 | A311E | gCa | gAa | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp12 | 311 | A311P | GcA | CcT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 311 | A311T | GcA | AcG | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcC | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 311 | A311X | GCa | TAa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | B.1.1.340 | 0.045455 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | B.1.1.393 | 0.111111 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 311 | A311del1 | Gca | -ca | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp12 | 311 | A311P | Gca | Cca | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp12 | 311 | A311del1 | Gca | -ca | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp12 | 311 | A311del1 | Gca | -ca | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp12 | 311 | A311del1 | gcA | gc- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 311 | A311E | gCa | gAa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp12 | 311 | A311A | gcA | gcG | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 311 | A311del1 | Gca | -ca | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 311 | A311E | gCa | gAa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 311 | A311Q | GCa | CAa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 311 | A311P | Gca | Cca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 311 | A311E | gCa | gAa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | B.4.7 | 0.010101 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | B.46 | 0.020833 |
ORF1ab/nsp12 | 311 | A311K | GCa | AAa | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | C.11 | 0.010638 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | C.3 | 0.007634 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp12 | 311 | A311T | Gca | Aca | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 311 | A311E | gCa | gAa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp12 | 311 | A311V | gCa | gTa | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp12 | 311 | A311I | GCa | ATa | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp12 | 311 | A311del | GCA | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp12 | 311 | A311S | Gca | Tca | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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