CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 308

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12308L308LL4700LsynCtgTtg364130430.83575914362-14364
ORF1ab/nsp12308L308LL4700LsynctGctT36413180.087338614362-14364
ORF1ab/nsp12308L308LL4700LsynctGctA36412780.076352614362-14364
ORF1ab/nsp12308L308LL4700LsynctGctC364120.000549314362-14364
ORF1ab/nsp12308L308delL4700deldelCTG---124124114362-14364
ORF1ab/nsp12308L308del1L4700del1delcTgc-g82790.96341514362-14364
ORF1ab/nsp12308L308del1L4700del1delctGct-8230.036585414362-14364
ORF1ab/nsp12308L308ML4700MnonsynCtgAtg3939114362-14364
ORF1ab/nsp12308L308PL4700PnonsyncTgcCg980.88888914362-14364
ORF1ab/nsp12308L308PL4700PnonsyncTGcCA910.11111114362-14364
ORF1ab/nsp12308L308VL4700VnonsynCtgGtg55114362-14364
ORF1ab/nsp12308L308QL4700QnonsyncTgcAg530.614362-14364
ORF1ab/nsp12308L308QL4700QnonsyncTGcAA520.414362-14364
ORF1ab/nsp12308L308HL4700HnonsyncTGcAC33114362-14364
ORF1ab/nsp12308L308RL4700RnonsyncTGcGA320.66666714362-14364
ORF1ab/nsp12308L308RL4700RnonsyncTgcGg310.33333314362-14364
ORF1ab/nsp12308L308TL4700TnonsynCTGACA22114362-14364
ORF1ab/nsp12308L308CL4700CnonsynCTGTGT11114362-14364
ORF1ab/nsp12308L308del2L4700del2delcTGc--11114362-14364
ORF1ab/nsp12308L308KL4700KnonsynCTgAAg11114362-14364
ORF1ab/nsp12308L308XL4700XnonsynCTgTAg11114362-14364

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12308L308LCtgTtg30433641All0.000582
ORF1ab/nsp12308L308LctGctT3183641All0.000061
ORF1ab/nsp12308L308LctGctA2783641All0.000053
ORF1ab/nsp12308L308LctGctC23641All0
ORF1ab/nsp12308L308LCtgTtg26592659AY.680.727895
ORF1ab/nsp12308L308LctGctT199405AY.40.00031
ORF1ab/nsp12308L308LctGctA172405AY.40.000268
ORF1ab/nsp12308L308LCtgTtg32405AY.40.00005
ORF1ab/nsp12308L308LctGctC2405AY.40.000003
ORF1ab/nsp12308L308delCTG---124124All0.000024
ORF1ab/nsp12308L308del1cTgc-g7982All0.000015
ORF1ab/nsp12308L308del1ctGct-382All0.000001
ORF1ab/nsp12308L308LCtgTtg4477B.1.1.70.000039
ORF1ab/nsp12308L308LctGctA2577B.1.1.70.000022
ORF1ab/nsp12308L308LctGctT877B.1.1.70.000007
ORF1ab/nsp12308L308LctGctT4169B.1.617.20.000154
ORF1ab/nsp12308L308LctGctA1769B.1.617.20.000064
ORF1ab/nsp12308L308LCtgTtg1169B.1.617.20.000041
ORF1ab/nsp12308L308delCTG---6666B.1.1.70.000059
ORF1ab/nsp12308L308del1cTgc-g6666B.1.1.70.000059
ORF1ab/nsp12308L308LCtgTtg4954B.10.000449
ORF1ab/nsp12308L308LctGctT554B.10.000046
ORF1ab/nsp12308L308MCtgAtg3939All0.000007
ORF1ab/nsp12308L308LCtgTtg1835AY.440.00011
ORF1ab/nsp12308L308LctGctT1035AY.440.000061
ORF1ab/nsp12308L308LctGctA735AY.440.000043
ORF1ab/nsp12308L308LctGctT2532AY.250.00015
ORF1ab/nsp12308L308LCtgTtg632AY.250.000036
ORF1ab/nsp12308L308LctGctA132AY.250.000006
ORF1ab/nsp12308L308LctGctA1722AY.430.000075
ORF1ab/nsp12308L308LCtgTtg322AY.430.000013
ORF1ab/nsp12308L308LctGctT222AY.430.000009
ORF1ab/nsp12308L308LCtgTtg1119B.1.10.0002
ORF1ab/nsp12308L308LctGctT819B.1.10.000145
ORF1ab/nsp12308L308LCtgTtg1818B.1.1.280.005602
ORF1ab/nsp12308L308LCtgTtg1414AY.9.10.001172
ORF1ab/nsp12308L308LCtgTtg914B.1.4290.000212
ORF1ab/nsp12308L308LctGctA514B.1.4290.000118
ORF1ab/nsp12308L308LCtgTtg1112AY.1030.000068
ORF1ab/nsp12308L308LctGctA112AY.1030.000006
ORF1ab/nsp12308L308LCtgTtg1012B.1.1770.000132
ORF1ab/nsp12308L308LctGctA212B.1.1770.000026
ORF1ab/nsp12308L308delCTG---1010AY.40.000016
ORF1ab/nsp12308L308PcTgcCg89All0.000002
ORF1ab/nsp12308L308PcTGcCA19All0
ORF1ab/nsp12308L308LCtgTtg99B.1.2430.000626
ORF1ab/nsp12308L308LCtgTtg88B.1.4950.072727
ORF1ab/nsp12308L308LCtgTtg68P.10.000095
ORF1ab/nsp12308L308LctGctT28P.10.000032
ORF1ab/nsp12308L308LCtgTtg57AY.390.000124
ORF1ab/nsp12308L308LctGctA27AY.390.000049
ORF1ab/nsp12308L308LCtgTtg77AY.9.20.000257
ORF1ab/nsp12308L308LCtgTtg77B.1.177.160.004651
ORF1ab/nsp12308L308delCTG---66AY.430.000027
ORF1ab/nsp12308L308MCtgAtg66AY.50.000124
ORF1ab/nsp12308L308VCtgGtg55All0.000001
ORF1ab/nsp12308L308QcTgcAg35All0.000001
ORF1ab/nsp12308L308QcTGcAA25All0
ORF1ab/nsp12308L308delCTG---55AY.250.00003
ORF1ab/nsp12308L308delCTG---55AY.4.50.000537
ORF1ab/nsp12308L308MCtgAtg55B.1.5820.002453
ORF1ab/nsp12308L308LCtgTtg55C.36.30.002836
ORF1ab/nsp12308L308LCtgTtg45D.20.0003
ORF1ab/nsp12308L308LctGctT15D.20.000075
ORF1ab/nsp12308L308LctGctT24AY.1020.000053
ORF1ab/nsp12308L308LCtgTtg24AY.1020.000053
ORF1ab/nsp12308L308LCtgTtg34AY.1200.000112
ORF1ab/nsp12308L308LctGctT14AY.1200.000037
ORF1ab/nsp12308L308MCtgAtg44AY.40.000006
ORF1ab/nsp12308L308LctGctA44AY.99.20.000369
ORF1ab/nsp12308L308MCtgAtg44B.10.000037
ORF1ab/nsp12308L308LCtgTtg44B.1.1.3070.010127
ORF1ab/nsp12308L308LCtgTtg24B.1.1.4340.000697
ORF1ab/nsp12308L308LctGctT24B.1.1.4340.000697
ORF1ab/nsp12308L308LCtgTtg44B.1.3510.000119
ORF1ab/nsp12308L308LCtgTtg44B.1.5960.000349
ORF1ab/nsp12308L308HcTGcAC33All0.000001
ORF1ab/nsp12308L308RcTGcGA23All0
ORF1ab/nsp12308L308RcTgcGg13All0
ORF1ab/nsp12308L308LCtgTtg23AY.1180.000125
ORF1ab/nsp12308L308LctGctT13AY.1180.000063
ORF1ab/nsp12308L308LCtgTtg23AY.200.000078
ORF1ab/nsp12308L308LctGctA13AY.200.000039
ORF1ab/nsp12308L308LctGctA33AY.30.00003
ORF1ab/nsp12308L308MCtgAtg33AY.440.000018
ORF1ab/nsp12308L308LctGctT23AY.470.000062
ORF1ab/nsp12308L308LCtgTtg13AY.470.000031
ORF1ab/nsp12308L308LCtgTtg23AY.50.000041
ORF1ab/nsp12308L308LctGctA13AY.50.000021
ORF1ab/nsp12308L308LctGctA23AY.60.000082
ORF1ab/nsp12308L308LctGctT13AY.60.000041
ORF1ab/nsp12308L308LCtgTtg33AY.610.000314
ORF1ab/nsp12308L308LCtgTtg33AY.850.001282
ORF1ab/nsp12308L308LctGctA33AY.90.000203
ORF1ab/nsp12308L308delCTG---33B.1.1770.00004
ORF1ab/nsp12308L308del1cTgc-g33B.1.177.820.001432
ORF1ab/nsp12308L308LCtgTtg33B.1.20.000026
ORF1ab/nsp12308L308LCtgTtg33B.1.3490.002144
ORF1ab/nsp12308L308del1cTgc-g33B.1.3510.000089
ORF1ab/nsp12308L308LCtgTtg23B.1.4270.000101
ORF1ab/nsp12308L308LctGctA13B.1.4270.00005
ORF1ab/nsp12308L308MCtgAtg33B.1.617.20.000011
ORF1ab/nsp12308L308LCtgTtg33P.20.00056
ORF1ab/nsp12308L308TCTGACA220.111111
ORF1ab/nsp12308L308VCtgGtg220.111111
ORF1ab/nsp12308L308TCTGACA22All0
ORF1ab/nsp12308L308LctGctA12AY.1000.000046
ORF1ab/nsp12308L308LctGctT12AY.1000.000046
ORF1ab/nsp12308L308LCtgTtg22AY.1130.000285
ORF1ab/nsp12308L308MCtgAtg22AY.200.000078
ORF1ab/nsp12308L308LCtgTtg12AY.230.00007
ORF1ab/nsp12308L308LctGctA12AY.230.00007
ORF1ab/nsp12308L308LCtgTtg22AY.240.000862
ORF1ab/nsp12308L308LCtgTtg12AY.330.000067
ORF1ab/nsp12308L308LctGctT12AY.330.000067
ORF1ab/nsp12308L308LCtgTtg12AY.450.000122
ORF1ab/nsp12308L308LctGctA12AY.450.000122
ORF1ab/nsp12308L308del1cTgc-g22AY.520.001629
ORF1ab/nsp12308L308LCtgTtg22AY.750.000112
ORF1ab/nsp12308L308PcTgcCg22B.10.000018
ORF1ab/nsp12308L308delCTG---22B.10.000018
ORF1ab/nsp12308L308QcTgcAg22B.1.10.000036
ORF1ab/nsp12308L308LCtgTtg22B.1.1.3160.00185
ORF1ab/nsp12308L308LctGctT22B.1.1.3180.000604
ORF1ab/nsp12308L308LCtgTtg22B.1.1.5190.000079
ORF1ab/nsp12308L308MCtgAtg22B.1.1.70.000002
ORF1ab/nsp12308L308HcTGcAC22B.1.1.70.000002
ORF1ab/nsp12308L308QcTGcAA22B.1.1.70.000002
ORF1ab/nsp12308L308del1cTgc-g22B.1.1600.000062
ORF1ab/nsp12308L308LCtgTtg12B.1.177.40.000211
ORF1ab/nsp12308L308LctGctA12B.1.177.40.000211
ORF1ab/nsp12308L308PcTGcCA12B.1.20.000009
ORF1ab/nsp12308L308PcTgcCg12B.1.20.000009
ORF1ab/nsp12308L308LCtgTtg22B.1.4000.000858
ORF1ab/nsp12308L308delCTG---22B.1.6210.000177
ORF1ab/nsp12308L308MCtgAtg22P.1.140.000096
ORF1ab/nsp12308L308LCtgTtg22P.1.140.000096
ORF1ab/nsp12308L308MCtgAtg11A0.000387
ORF1ab/nsp12308L308LctGctA11A.2.50.000499
ORF1ab/nsp12308L308LctGctA11A.23.10.000704
ORF1ab/nsp12308L308MCtgAtg11AD.20.000219
ORF1ab/nsp12308L308LCtgTtg11AL.10.012987
ORF1ab/nsp12308L308XCTgTAg11All0
ORF1ab/nsp12308L308KCTgAAg11All0
ORF1ab/nsp12308L308del2cTGc--11All0
ORF1ab/nsp12308L308CCTGTGT11All0
ORF1ab/nsp12308L308LCtgTtg11AY.1100.000113
ORF1ab/nsp12308L308delCTG---11AY.1110.000183
ORF1ab/nsp12308L308PcTgcCg11AY.1170.000085
ORF1ab/nsp12308L308LCtgTtg11AY.1190.000035
ORF1ab/nsp12308L308LctGctT11AY.16.10.00047
ORF1ab/nsp12308L308delCTG---11AY.190.00114
ORF1ab/nsp12308L308LctGctA11AY.20.000356
ORF1ab/nsp12308L308LCtgTtg11AY.260.000028
ORF1ab/nsp12308L308LCtgTtg11AY.270.000065
ORF1ab/nsp12308L308LCtgTtg11AY.290.000016
ORF1ab/nsp12308L308delCTG---11AY.290.000016
ORF1ab/nsp12308L308delCTG---11AY.30.00001
ORF1ab/nsp12308L308LctGctT11AY.300.000396
ORF1ab/nsp12308L308LCtgTtg11AY.350.000233
ORF1ab/nsp12308L308LctGctA11AY.360.000148
ORF1ab/nsp12308L308MCtgAtg11AY.390.000025
ORF1ab/nsp12308L308PcTgcCg11AY.39.10.00004
ORF1ab/nsp12308L308LCtgTtg11AY.420.00004
ORF1ab/nsp12308L308RcTGcGA11AY.430.000004
ORF1ab/nsp12308L308HcTGcAC11AY.440.000006
ORF1ab/nsp12308L308QcTgcAg11AY.440.000006
ORF1ab/nsp12308L308LCtgTtg11AY.46.40.000165
ORF1ab/nsp12308L308LCtgTtg11AY.5.30.000337
ORF1ab/nsp12308L308LCtgTtg11AY.530.000288
ORF1ab/nsp12308L308LCtgTtg11AY.630.000387
ORF1ab/nsp12308L308delCTG---11AY.670.000464
ORF1ab/nsp12308L308LCtgTtg11AY.690.000187
ORF1ab/nsp12308L308LCtgTtg11AY.700.000209
ORF1ab/nsp12308L308delCTG---11AY.720.001361
ORF1ab/nsp12308L308LCtgTtg11AY.75.10.00018
ORF1ab/nsp12308L308delCTG---11AY.840.000437
ORF1ab/nsp12308L308delCTG---11AY.850.000427
ORF1ab/nsp12308L308delCTG---11AY.9.20.000037
ORF1ab/nsp12308L308LctGctA11AY.920.000287
ORF1ab/nsp12308L308PcTgcCg11AY.930.000273
ORF1ab/nsp12308L308MCtgAtg11AY.930.000273
ORF1ab/nsp12308L308VCtgGtg11AY.98.10.000048
ORF1ab/nsp12308L308RcTGcGA11AY.990.001049
ORF1ab/nsp12308L308LCtgTtg11B0.000128
ORF1ab/nsp12308L308del1ctGct-11B.10.000009
ORF1ab/nsp12308L308delCTG---11B.1.10.000018
ORF1ab/nsp12308L308MCtgAtg11B.1.10.000018
ORF1ab/nsp12308L308KCTgAAg11B.1.10.000018
ORF1ab/nsp12308L308XCTgTAg11B.1.10.000018
ORF1ab/nsp12308L308PcTgcCg11B.1.1.10.000327
ORF1ab/nsp12308L308del1ctGct-11B.1.1.100.001115
ORF1ab/nsp12308L308LCtgTtg11B.1.1.1890.001513
ORF1ab/nsp12308L308delCTG---11B.1.1.2210.010101
ORF1ab/nsp12308L308delCTG---11B.1.1.2320.001815
ORF1ab/nsp12308L308LCtgTtg11B.1.1.2550.00303
ORF1ab/nsp12308L308LCtgTtg11B.1.1.2940.001266
ORF1ab/nsp12308L308LCtgTtg11B.1.1.3030.002762
ORF1ab/nsp12308L308LCtgTtg11B.1.1.370.000193
ORF1ab/nsp12308L308delCTG---11B.1.1.370.000193
ORF1ab/nsp12308L308LctGctT11B.1.1.4090.002833
ORF1ab/nsp12308L308LCtgTtg11B.1.1.4290.004608
ORF1ab/nsp12308L308LCtgTtg11B.1.1.4500.034483
ORF1ab/nsp12308L308PcTgcCg11B.1.1.70.000001
ORF1ab/nsp12308L308del2cTGc--11B.1.1.70.000001
ORF1ab/nsp12308L308RcTgcGg11B.1.1.70.000001
ORF1ab/nsp12308L308delCTG---11B.1.1.700.000341
ORF1ab/nsp12308L308LctGctT11B.1.1600.000031
ORF1ab/nsp12308L308MCtgAtg11B.1.1600.000031
ORF1ab/nsp12308L308del1ctGct-11B.1.160.290.004219
ORF1ab/nsp12308L308MCtgAtg11B.1.1770.000013
ORF1ab/nsp12308L308delCTG---11B.1.177.180.00116
ORF1ab/nsp12308L308delCTG---11B.1.177.540.000606
ORF1ab/nsp12308L308LCtgTtg11B.1.177.570.000281
ORF1ab/nsp12308L308del1cTgc-g11B.1.177.60.000977
ORF1ab/nsp12308L308LCtgTtg11B.1.177.600.000218
ORF1ab/nsp12308L308LCtgTtg11B.1.177.620.001192
ORF1ab/nsp12308L308delCTG---11B.1.177.690.001484
ORF1ab/nsp12308L308LCtgTtg11B.1.177.770.000726
ORF1ab/nsp12308L308VCtgGtg11B.1.20.000009
ORF1ab/nsp12308L308MCtgAtg11B.1.214.20.0006
ORF1ab/nsp12308L308delCTG---11B.1.230.006061
ORF1ab/nsp12308L308LctGctA11B.1.2400.000216
ORF1ab/nsp12308L308LCtgTtg11B.1.2800.007143
ORF1ab/nsp12308L308delCTG---11B.1.351.50.0006
ORF1ab/nsp12308L308CCTGTGT11B.1.360.000146
ORF1ab/nsp12308L308del1cTgc-g11B.1.36.10.00114
ORF1ab/nsp12308L308delCTG---11B.1.36.170.000494
ORF1ab/nsp12308L308delCTG---11B.1.36.290.000517
ORF1ab/nsp12308L308LCtgTtg11B.1.36.360.000602
ORF1ab/nsp12308L308LCtgTtg11B.1.3890.001002
ORF1ab/nsp12308L308LctGctA11B.1.3900.010638
ORF1ab/nsp12308L308LctGctA11B.1.3960.000706
ORF1ab/nsp12308L308LCtgTtg11B.1.4110.003704
ORF1ab/nsp12308L308delCTG---11B.1.5250.000113
ORF1ab/nsp12308L308LctGctA11B.1.5750.000303
ORF1ab/nsp12308L308LCtgTtg11B.1.5900.004545
ORF1ab/nsp12308L308LCtgTtg11B.1.5950.000261
ORF1ab/nsp12308L308LCtgTtg11B.1.6120.002653
ORF1ab/nsp12308L308LCtgTtg11B.1.6210.000089
ORF1ab/nsp12308L308LctGctA11B.1.6370.000073
ORF1ab/nsp12308L308VCtgGtg11P.10.000016
ORF1ab/nsp12308L308delCTG---11P.1.10.000318
ORF1ab/nsp12308L308delCTG---11P.1.100.000269
ORF1ab/nsp12308L308LCtgTtg11Q.10.000126
ORF1ab/nsp12308L308delCTG---11Q.20.000613
ORF1ab/nsp12308L308del1cTgc-g11R.10.00009