CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 304

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12304D304DD4696DsyngaCgaT544544114350-14352
ORF1ab/nsp12304D304YD4696YnonsynGacTac543543114350-14352
ORF1ab/nsp12304D304delD4696deldelGAC---123123114350-14352
ORF1ab/nsp12304D304GD4696GnonsyngAcgGc9393114350-14352
ORF1ab/nsp12304D304ND4696NnonsynGacAac29260.89655214350-14352
ORF1ab/nsp12304D304ND4696NnonsynGaCAaT2930.10344814350-14352
ORF1ab/nsp12304D304HD4696HnonsynGacCac88114350-14352
ORF1ab/nsp12304D304ED4696EnonsyngaCgaA870.87514350-14352
ORF1ab/nsp12304D304AD4696AnonsyngAcgCc870.87514350-14352
ORF1ab/nsp12304D304AD4696AnonsyngACgCA810.12514350-14352
ORF1ab/nsp12304D304ED4696EnonsyngaCgaG810.12514350-14352
ORF1ab/nsp12304D304del2D4696del2delGAc--c33114350-14352
ORF1ab/nsp12304D304SD4696SnonsynGACAGT33114350-14352
ORF1ab/nsp12304D304VD4696VnonsyngAcgTc320.66666714350-14352
ORF1ab/nsp12304D304VD4696VnonsyngACgTA310.33333314350-14352
ORF1ab/nsp12304D304del1D4696del1delGaC-aT22114350-14352
ORF1ab/nsp12304D304TD4696TnonsynGACACG11114350-14352
ORF1ab/nsp12304D304PD4696PnonsynGACCCT11114350-14352

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12304D304DgaCgaT544544All0.000104
ORF1ab/nsp12304D304YGacTac543543All0.000104
ORF1ab/nsp12304D304DgaCgaT247247B.1.1.70.000221
ORF1ab/nsp12304D304YGacTac155155AY.430.000687
ORF1ab/nsp12304D304delGAC---123123All0.000024
ORF1ab/nsp12304D304YGacTac107107B.1.617.20.000403
ORF1ab/nsp12304D304GgAcgGc9393All0.000018
ORF1ab/nsp12304D304delGAC---6565B.1.1.70.000058
ORF1ab/nsp12304D304DgaCgaT4949AN.10.98
ORF1ab/nsp12304D304GgAcgGc4141B.1.617.20.000154
ORF1ab/nsp12304D304YGacTac3535A.10.009865
ORF1ab/nsp12304D304YGacTac3131AY.250.000186
ORF1ab/nsp12304D304DgaCgaT3131AY.40.000048
ORF1ab/nsp12304D304NGacAac2629All0.000005
ORF1ab/nsp12304D304NGaCAaT329All0.000001
ORF1ab/nsp12304D304DgaCgaT2929B.1.4270.001464
ORF1ab/nsp12304D304YGacTac2424AY.50.000496
ORF1ab/nsp12304D304YGacTac1919B.1.1.3520.59375
ORF1ab/nsp12304D304YGacTac1717AY.40.000026
ORF1ab/nsp12304D304DgaCgaT1717B.1.617.20.000064
ORF1ab/nsp12304D304GgAcgGc1515AY.40.000023
ORF1ab/nsp12304D304YGacTac1515B.1.1.70.000013
ORF1ab/nsp12304D304YGacTac1414AY.4.10.010324
ORF1ab/nsp12304D304YGacTac1313AY.330.000868
ORF1ab/nsp12304D304YGacTac1313B.10.000119
ORF1ab/nsp12304D304GgAcgGc1111AY.290.000174
ORF1ab/nsp12304D304delGAC---1111AY.40.000017
ORF1ab/nsp12304D304NGacAac1111AY.40.000017
ORF1ab/nsp12304D304DgaCgaT1111AY.430.000049
ORF1ab/nsp12304D304DgaCgaT1111B.10.000101
ORF1ab/nsp12304D304DgaCgaT99AY.1200.000335
ORF1ab/nsp12304D304DgaCgaT99P.10.000142
ORF1ab/nsp12304D304HGacCac88All0.000002
ORF1ab/nsp12304D304EgaCgaA78All0.000001
ORF1ab/nsp12304D304AgAcgCc78All0.000001
ORF1ab/nsp12304D304AgACgCA18All0
ORF1ab/nsp12304D304EgaCgaG18All0
ORF1ab/nsp12304D304DgaCgaT88B.1.10.000145
ORF1ab/nsp12304D304DgaCgaT88B.1.2580.000532
ORF1ab/nsp12304D304YGacTac88D.20.0006
ORF1ab/nsp12304D304YGacTac77AY.390.000173
ORF1ab/nsp12304D304DgaCgaT77B.1.1600.000218
ORF1ab/nsp12304D304DgaCgaT66AY.1030.000037
ORF1ab/nsp12304D304delGAC---66AY.430.000027
ORF1ab/nsp12304D304DgaCgaT66AY.440.000037
ORF1ab/nsp12304D304DgaCgaT66B.1.20.000053
ORF1ab/nsp12304D304DgaCgaT55AY.250.00003
ORF1ab/nsp12304D304delGAC---55AY.250.00003
ORF1ab/nsp12304D304DgaCgaT55AY.370.00158
ORF1ab/nsp12304D304delGAC---55AY.4.50.000537
ORF1ab/nsp12304D304YGacTac55AY.460.00052
ORF1ab/nsp12304D304NGacAac45B.1.1.70.000004
ORF1ab/nsp12304D304NGaCAaT15B.1.1.70.000001
ORF1ab/nsp12304D304YGacTac55B.1.5260.000118
ORF1ab/nsp12304D304YGacTac44AY.1020.000106
ORF1ab/nsp12304D304YGacTac44AY.1060.00134
ORF1ab/nsp12304D304DgaCgaT44AY.230.000279
ORF1ab/nsp12304D304GgAcgGc44AY.260.000113
ORF1ab/nsp12304D304DgaCgaT44AY.30.00004
ORF1ab/nsp12304D304DgaCgaT44AY.300.001583
ORF1ab/nsp12304D304NGacAac44AY.4.50.00043
ORF1ab/nsp12304D304GgAcgGc44B.1.1.70.000004
ORF1ab/nsp12304D304YGacTac44B.1.20.000035
ORF1ab/nsp12304D304del2GAc--c33All0.000001
ORF1ab/nsp12304D304SGACAGT33All0.000001
ORF1ab/nsp12304D304VgAcgTc23All0
ORF1ab/nsp12304D304VgACgTA13All0
ORF1ab/nsp12304D304DgaCgaT33AY.140.000264
ORF1ab/nsp12304D304AgAcgCc33AY.250.000018
ORF1ab/nsp12304D304YGacTac33AY.290.000047
ORF1ab/nsp12304D304YGacTac33AY.3.10.000256
ORF1ab/nsp12304D304DgaCgaT33AY.390.000074
ORF1ab/nsp12304D304YGacTac33AY.440.000018
ORF1ab/nsp12304D304DgaCgaT33AY.750.000168
ORF1ab/nsp12304D304YGacTac33AY.98.10.000145
ORF1ab/nsp12304D304DgaCgaT33B0.000383
ORF1ab/nsp12304D304YGacTac33B.1.1.2580.009772
ORF1ab/nsp12304D304delGAC---33B.1.1770.00004
ORF1ab/nsp12304D304SGACAGT220.111111
ORF1ab/nsp12304D304delGAC---220.111111
ORF1ab/nsp12304D304EgaCgaA220.111111
ORF1ab/nsp12304D304del1GaC-aT22All0
ORF1ab/nsp12304D304GgAcgGc22AY.1100.000225
ORF1ab/nsp12304D304DgaCgaT22AY.1180.000125
ORF1ab/nsp12304D304YGacTac22AY.1210.000271
ORF1ab/nsp12304D304YGacTac22AY.230.000139
ORF1ab/nsp12304D304YGacTac22AY.30.00002
ORF1ab/nsp12304D304DgaCgaT22AY.3.10.000171
ORF1ab/nsp12304D304YGacTac22AY.4.20.000043
ORF1ab/nsp12304D304GgAcgGc22AY.4.50.000215
ORF1ab/nsp12304D304DgaCgaT22AY.450.000243
ORF1ab/nsp12304D304DgaCgaT22AY.46.40.000329
ORF1ab/nsp12304D304YGacTac22AY.46.60.000144
ORF1ab/nsp12304D304YGacTac22AY.5.40.000553
ORF1ab/nsp12304D304delGAC---22B.10.000018
ORF1ab/nsp12304D304HGacCac22B.10.000018
ORF1ab/nsp12304D304YGacTac22B.1.10.000036
ORF1ab/nsp12304D304EgaCgaA22B.1.10.000036
ORF1ab/nsp12304D304YGacTac22B.1.1.5190.000079
ORF1ab/nsp12304D304DgaCgaT22B.1.1.5190.000079
ORF1ab/nsp12304D304GgAcgGc22B.1.20.000018
ORF1ab/nsp12304D304YGacTac22B.1.2210.000142
ORF1ab/nsp12304D304DgaCgaT22B.1.2430.000139
ORF1ab/nsp12304D304DgaCgaT22B.1.360.000292
ORF1ab/nsp12304D304DgaCgaT22B.1.36.80.002
ORF1ab/nsp12304D304DgaCgaT22B.1.5750.000607
ORF1ab/nsp12304D304DgaCgaT22B.1.5960.000174
ORF1ab/nsp12304D304DgaCgaT22B.1.6370.000146
ORF1ab/nsp12304D304DgaCgaT22P.1.140.000096
ORF1ab/nsp12304D304DgaCgaT22P.20.000373
ORF1ab/nsp12304D304VgACgTA11AE.30.032258
ORF1ab/nsp12304D304PGACCCT11All0
ORF1ab/nsp12304D304TGACACG11All0
ORF1ab/nsp12304D304GgAcgGc11AY.1030.000006
ORF1ab/nsp12304D304YGacTac11AY.1030.000006
ORF1ab/nsp12304D304AgAcgCc11AY.1030.000006
ORF1ab/nsp12304D304YGacTac11AY.1100.000113
ORF1ab/nsp12304D304delGAC---11AY.1110.000183
ORF1ab/nsp12304D304GgAcgGc11AY.1130.000142
ORF1ab/nsp12304D304HGacCac11AY.1180.000063
ORF1ab/nsp12304D304AgAcgCc11AY.1180.000063
ORF1ab/nsp12304D304DgaCgaT11AY.1190.000035
ORF1ab/nsp12304D304GgAcgGc11AY.1190.000035
ORF1ab/nsp12304D304AgAcgCc11AY.1200.000037
ORF1ab/nsp12304D304delGAC---11AY.190.00114
ORF1ab/nsp12304D304YGacTac11AY.200.000039
ORF1ab/nsp12304D304GgAcgGc11AY.250.000006
ORF1ab/nsp12304D304delGAC---11AY.290.000016
ORF1ab/nsp12304D304NGacAac11AY.290.000016
ORF1ab/nsp12304D304DgaCgaT11AY.290.000016
ORF1ab/nsp12304D304delGAC---11AY.30.00001
ORF1ab/nsp12304D304DgaCgaT11AY.34.10.00051
ORF1ab/nsp12304D304GgAcgGc11AY.390.000025
ORF1ab/nsp12304D304DgaCgaT11AY.4.20.000022
ORF1ab/nsp12304D304YGacTac11AY.4.40.000409
ORF1ab/nsp12304D304DgaCgaT11AY.4.50.000107
ORF1ab/nsp12304D304DgaCgaT11AY.420.00004
ORF1ab/nsp12304D304YGacTac11AY.420.00004
ORF1ab/nsp12304D304del1GaC-aT11AY.430.000004
ORF1ab/nsp12304D304HGacCac11AY.430.000004
ORF1ab/nsp12304D304GgAcgGc11AY.440.000006
ORF1ab/nsp12304D304YGacTac11AY.470.000031
ORF1ab/nsp12304D304GgAcgGc11AY.540.000095
ORF1ab/nsp12304D304YGacTac11AY.560.001605
ORF1ab/nsp12304D304YGacTac11AY.590.00053
ORF1ab/nsp12304D304GgAcgGc11AY.590.00053
ORF1ab/nsp12304D304DgaCgaT11AY.60.000041
ORF1ab/nsp12304D304YGacTac11AY.60.000041
ORF1ab/nsp12304D304YGacTac11AY.610.000105
ORF1ab/nsp12304D304NGaCAaT11AY.610.000105
ORF1ab/nsp12304D304DgaCgaT11AY.620.000436
ORF1ab/nsp12304D304DgaCgaT11AY.650.000533
ORF1ab/nsp12304D304delGAC---11AY.670.000464
ORF1ab/nsp12304D304delGAC---11AY.720.001361
ORF1ab/nsp12304D304DgaCgaT11AY.75.10.00018
ORF1ab/nsp12304D304NGaCAaT11AY.840.000437
ORF1ab/nsp12304D304delGAC---11AY.850.000427
ORF1ab/nsp12304D304DgaCgaT11AY.90.000068
ORF1ab/nsp12304D304delGAC---11AY.9.20.000037
ORF1ab/nsp12304D304YGacTac11AY.930.000273
ORF1ab/nsp12304D304DgaCgaT11AY.960.002075
ORF1ab/nsp12304D304DgaCgaT11AY.98.10.000048
ORF1ab/nsp12304D304del1GaC-aT11AY.990.001049
ORF1ab/nsp12304D304YGacTac11AY.99.20.000092
ORF1ab/nsp12304D304NGacAac11B0.000128
ORF1ab/nsp12304D304YGacTac11B0.000128
ORF1ab/nsp12304D304NGacAac11B.10.000009
ORF1ab/nsp12304D304delGAC---11B.1.10.000018
ORF1ab/nsp12304D304NGacAac11B.1.10.000018
ORF1ab/nsp12304D304GgAcgGc11B.1.1.10.000327
ORF1ab/nsp12304D304YGacTac11B.1.1.1410.002012
ORF1ab/nsp12304D304YGacTac11B.1.1.1860.003436
ORF1ab/nsp12304D304YGacTac11B.1.1.2050.003717
ORF1ab/nsp12304D304YGacTac11B.1.1.2200.001859
ORF1ab/nsp12304D304delGAC---11B.1.1.2210.010101
ORF1ab/nsp12304D304DgaCgaT11B.1.1.2220.000204
ORF1ab/nsp12304D304YGacTac11B.1.1.2220.000204
ORF1ab/nsp12304D304delGAC---11B.1.1.2320.001815
ORF1ab/nsp12304D304YGacTac11B.1.1.3060.000438
ORF1ab/nsp12304D304DgaCgaT11B.1.1.3060.000438
ORF1ab/nsp12304D304del2GAc--c11B.1.1.3110.000358
ORF1ab/nsp12304D304DgaCgaT11B.1.1.3180.000302
ORF1ab/nsp12304D304GgAcgGc11B.1.1.3660.015873
ORF1ab/nsp12304D304delGAC---11B.1.1.370.000193
ORF1ab/nsp12304D304DgaCgaT11B.1.1.390.00051
ORF1ab/nsp12304D304GgAcgGc11B.1.1.3980.003226
ORF1ab/nsp12304D304HGacCac11B.1.1.5190.00004
ORF1ab/nsp12304D304HGacCac11B.1.1.70.000001
ORF1ab/nsp12304D304TGACACG11B.1.1.70.000001
ORF1ab/nsp12304D304SGACAGT11B.1.1.70.000001
ORF1ab/nsp12304D304AgAcgCc11B.1.1.70.000001
ORF1ab/nsp12304D304delGAC---11B.1.1.700.000341
ORF1ab/nsp12304D304DgaCgaT11B.1.1530.018868
ORF1ab/nsp12304D304DgaCgaT11B.1.1730.026316
ORF1ab/nsp12304D304NGacAac11B.1.1770.000013
ORF1ab/nsp12304D304DgaCgaT11B.1.1770.000013
ORF1ab/nsp12304D304YGacTac11B.1.1770.000013
ORF1ab/nsp12304D304YGacTac11B.1.177.170.000821
ORF1ab/nsp12304D304delGAC---11B.1.177.180.00116
ORF1ab/nsp12304D304delGAC---11B.1.177.540.000606
ORF1ab/nsp12304D304YGacTac11B.1.177.70.000165
ORF1ab/nsp12304D304NGacAac11B.1.177.710.010101
ORF1ab/nsp12304D304YGacTac11B.1.177.740.015152
ORF1ab/nsp12304D304YGacTac11B.1.177.850.005435
ORF1ab/nsp12304D304delGAC---11B.1.177.870.000728
ORF1ab/nsp12304D304del2GAc--c11B.1.177.90.001332
ORF1ab/nsp12304D304YGacTac11B.1.1880.016667
ORF1ab/nsp12304D304delGAC---11B.1.230.006061
ORF1ab/nsp12304D304del2GAc--c11B.1.258.30.001675
ORF1ab/nsp12304D304NGacAac11B.1.3110.000275
ORF1ab/nsp12304D304DgaCgaT11B.1.3290.000608
ORF1ab/nsp12304D304DgaCgaT11B.1.3510.00003
ORF1ab/nsp12304D304AgACgCA11B.1.360.000146
ORF1ab/nsp12304D304EgaCgaA11B.1.36.170.000494
ORF1ab/nsp12304D304delGAC---11B.1.36.170.000494
ORF1ab/nsp12304D304delGAC---11B.1.36.290.000517
ORF1ab/nsp12304D304EgaCgaA11B.1.3670.000792
ORF1ab/nsp12304D304DgaCgaT11B.1.3690.000285
ORF1ab/nsp12304D304delGAC---11B.1.5250.000113
ORF1ab/nsp12304D304DgaCgaT11B.1.5610.000397
ORF1ab/nsp12304D304YGacTac11B.1.5680.001111
ORF1ab/nsp12304D304EgaCgaG11B.1.5950.000261
ORF1ab/nsp12304D304EgaCgaA11B.1.5960.000087
ORF1ab/nsp12304D304HGacCac11B.1.5960.000087
ORF1ab/nsp12304D304VgAcgTc11B.1.5960.000087
ORF1ab/nsp12304D304YGacTac11B.1.6000.005848
ORF1ab/nsp12304D304VgAcgTc11B.1.617.20.000004
ORF1ab/nsp12304D304DgaCgaT11B.1.6210.000089
ORF1ab/nsp12304D304PGACCCT11B.1.6210.000089
ORF1ab/nsp12304D304delGAC---11B.1.6210.000089
ORF1ab/nsp12304D304YGacTac11B.1.6270.00202
ORF1ab/nsp12304D304DgaCgaT11B.1.6360.006711
ORF1ab/nsp12304D304YGacTac11B.30.000831
ORF1ab/nsp12304D304GgAcgGc11B.60.00091
ORF1ab/nsp12304D304HGacCac11D.20.000075
ORF1ab/nsp12304D304YGacTac11P.10.000016
ORF1ab/nsp12304D304delGAC---11P.1.10.000318
ORF1ab/nsp12304D304DgaCgaT11P.1.10.000318
ORF1ab/nsp12304D304delGAC---11P.1.100.000269
ORF1ab/nsp12304D304DgaCgaT11P.1.130.000898
ORF1ab/nsp12304D304DgaCgaT11P.1.170.000162
ORF1ab/nsp12304D304delGAC---11Q.20.000613
ORF1ab/nsp12304D304DgaCgaT11Q.80.000165