CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 304 | D304D | D4696D | syn | gaC | gaT | 544 | 544 | 1 | 14350-14352 |
ORF1ab/nsp12 | 304 | D304Y | D4696Y | nonsyn | Gac | Tac | 543 | 543 | 1 | 14350-14352 |
ORF1ab/nsp12 | 304 | D304del | D4696del | del | GAC | --- | 123 | 123 | 1 | 14350-14352 |
ORF1ab/nsp12 | 304 | D304G | D4696G | nonsyn | gAc | gGc | 93 | 93 | 1 | 14350-14352 |
ORF1ab/nsp12 | 304 | D304N | D4696N | nonsyn | Gac | Aac | 29 | 26 | 0.896552 | 14350-14352 |
ORF1ab/nsp12 | 304 | D304N | D4696N | nonsyn | GaC | AaT | 29 | 3 | 0.103448 | 14350-14352 |
ORF1ab/nsp12 | 304 | D304H | D4696H | nonsyn | Gac | Cac | 8 | 8 | 1 | 14350-14352 |
ORF1ab/nsp12 | 304 | D304E | D4696E | nonsyn | gaC | gaA | 8 | 7 | 0.875 | 14350-14352 |
ORF1ab/nsp12 | 304 | D304A | D4696A | nonsyn | gAc | gCc | 8 | 7 | 0.875 | 14350-14352 |
ORF1ab/nsp12 | 304 | D304A | D4696A | nonsyn | gAC | gCA | 8 | 1 | 0.125 | 14350-14352 |
ORF1ab/nsp12 | 304 | D304E | D4696E | nonsyn | gaC | gaG | 8 | 1 | 0.125 | 14350-14352 |
ORF1ab/nsp12 | 304 | D304del2 | D4696del2 | del | GAc | --c | 3 | 3 | 1 | 14350-14352 |
ORF1ab/nsp12 | 304 | D304S | D4696S | nonsyn | GAC | AGT | 3 | 3 | 1 | 14350-14352 |
ORF1ab/nsp12 | 304 | D304V | D4696V | nonsyn | gAc | gTc | 3 | 2 | 0.666667 | 14350-14352 |
ORF1ab/nsp12 | 304 | D304V | D4696V | nonsyn | gAC | gTA | 3 | 1 | 0.333333 | 14350-14352 |
ORF1ab/nsp12 | 304 | D304del1 | D4696del1 | del | GaC | -aT | 2 | 2 | 1 | 14350-14352 |
ORF1ab/nsp12 | 304 | D304T | D4696T | nonsyn | GAC | ACG | 1 | 1 | 1 | 14350-14352 |
ORF1ab/nsp12 | 304 | D304P | D4696P | nonsyn | GAC | CCT | 1 | 1 | 1 | 14350-14352 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 544 | 544 | All | 0.000104 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 543 | 543 | All | 0.000104 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 247 | 247 | B.1.1.7 | 0.000221 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 155 | 155 | AY.43 | 0.000687 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 123 | 123 | All | 0.000024 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 107 | 107 | B.1.617.2 | 0.000403 |
ORF1ab/nsp12 | 304 | D304G | gAc | gGc | 93 | 93 | All | 0.000018 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 65 | 65 | B.1.1.7 | 0.000058 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 49 | 49 | AN.1 | 0.98 |
ORF1ab/nsp12 | 304 | D304G | gAc | gGc | 41 | 41 | B.1.617.2 | 0.000154 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 35 | 35 | A.1 | 0.009865 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 31 | 31 | AY.25 | 0.000186 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 31 | 31 | AY.4 | 0.000048 |
ORF1ab/nsp12 | 304 | D304N | Gac | Aac | 26 | 29 | All | 0.000005 |
ORF1ab/nsp12 | 304 | D304N | GaC | AaT | 3 | 29 | All | 0.000001 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 29 | 29 | B.1.427 | 0.001464 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 24 | 24 | AY.5 | 0.000496 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 19 | 19 | B.1.1.352 | 0.59375 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 17 | 17 | B.1.617.2 | 0.000064 |
ORF1ab/nsp12 | 304 | D304G | gAc | gGc | 15 | 15 | AY.4 | 0.000023 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 14 | 14 | AY.4.1 | 0.010324 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 13 | 13 | AY.33 | 0.000868 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp12 | 304 | D304G | gAc | gGc | 11 | 11 | AY.29 | 0.000174 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 11 | 11 | AY.4 | 0.000017 |
ORF1ab/nsp12 | 304 | D304N | Gac | Aac | 11 | 11 | AY.4 | 0.000017 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 11 | 11 | AY.43 | 0.000049 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 9 | 9 | AY.120 | 0.000335 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp12 | 304 | D304H | Gac | Cac | 8 | 8 | All | 0.000002 |
ORF1ab/nsp12 | 304 | D304E | gaC | gaA | 7 | 8 | All | 0.000001 |
ORF1ab/nsp12 | 304 | D304A | gAc | gCc | 7 | 8 | All | 0.000001 |
ORF1ab/nsp12 | 304 | D304A | gAC | gCA | 1 | 8 | All | 0 |
ORF1ab/nsp12 | 304 | D304E | gaC | gaG | 1 | 8 | All | 0 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 8 | 8 | B.1.258 | 0.000532 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 8 | 8 | D.2 | 0.0006 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 7 | 7 | B.1.160 | 0.000218 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 5 | 5 | AY.37 | 0.00158 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp12 | 304 | D304N | Gac | Aac | 4 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 304 | D304N | GaC | AaT | 1 | 5 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 4 | 4 | AY.106 | 0.00134 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp12 | 304 | D304G | gAc | gGc | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 4 | 4 | AY.30 | 0.001583 |
ORF1ab/nsp12 | 304 | D304N | Gac | Aac | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp12 | 304 | D304G | gAc | gGc | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp12 | 304 | D304del2 | GAc | --c | 3 | 3 | All | 0.000001 |
ORF1ab/nsp12 | 304 | D304S | GAC | AGT | 3 | 3 | All | 0.000001 |
ORF1ab/nsp12 | 304 | D304V | gAc | gTc | 2 | 3 | All | 0 |
ORF1ab/nsp12 | 304 | D304V | gAC | gTA | 1 | 3 | All | 0 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp12 | 304 | D304A | gAc | gCc | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 3 | 3 | B | 0.000383 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 3 | 3 | B.1.1.258 | 0.009772 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp12 | 304 | D304S | GAC | AGT | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 304 | D304E | gaC | gaA | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 304 | D304del1 | GaC | -aT | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 304 | D304G | gAc | gGc | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp12 | 304 | D304G | gAc | gGc | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 304 | D304H | Gac | Cac | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 304 | D304E | gaC | gaA | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp12 | 304 | D304G | gAc | gGc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp12 | 304 | D304V | gAC | gTA | 1 | 1 | AE.3 | 0.032258 |
ORF1ab/nsp12 | 304 | D304P | GAC | CCT | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 304 | D304T | GAC | ACG | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 304 | D304G | gAc | gGc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 304 | D304A | gAc | gCc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 304 | D304G | gAc | gGc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 304 | D304H | Gac | Cac | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 304 | D304A | gAc | gCc | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 304 | D304G | gAc | gGc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 304 | D304A | gAc | gCc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp12 | 304 | D304G | gAc | gGc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 304 | D304N | Gac | Aac | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp12 | 304 | D304G | gAc | gGc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 304 | D304del1 | GaC | -aT | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 304 | D304H | Gac | Cac | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 304 | D304G | gAc | gGc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 304 | D304G | gAc | gGc | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 304 | D304G | gAc | gGc | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 304 | D304N | GaC | AaT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp12 | 304 | D304N | GaC | AaT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 304 | D304del1 | GaC | -aT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 304 | D304N | Gac | Aac | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 304 | D304N | Gac | Aac | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 304 | D304N | Gac | Aac | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 304 | D304G | gAc | gGc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 304 | D304del2 | GAc | --c | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 304 | D304G | gAc | gGc | 1 | 1 | B.1.1.366 | 0.015873 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp12 | 304 | D304G | gAc | gGc | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp12 | 304 | D304H | Gac | Cac | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp12 | 304 | D304H | Gac | Cac | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 304 | D304T | GAC | ACG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 304 | D304S | GAC | AGT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 304 | D304A | gAc | gCc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | B.1.153 | 0.018868 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | B.1.173 | 0.026316 |
ORF1ab/nsp12 | 304 | D304N | Gac | Aac | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp12 | 304 | D304N | Gac | Aac | 1 | 1 | B.1.177.71 | 0.010101 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | B.1.177.74 | 0.015152 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | B.1.177.85 | 0.005435 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp12 | 304 | D304del2 | GAc | --c | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | B.1.188 | 0.016667 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp12 | 304 | D304del2 | GAc | --c | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp12 | 304 | D304N | Gac | Aac | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 304 | D304A | gAC | gCA | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 304 | D304E | gaC | gaA | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp12 | 304 | D304E | gaC | gaA | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp12 | 304 | D304E | gaC | gaG | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp12 | 304 | D304E | gaC | gaA | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 304 | D304H | Gac | Cac | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 304 | D304V | gAc | gTc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp12 | 304 | D304V | gAc | gTc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 304 | D304P | GAC | CCT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp12 | 304 | D304G | gAc | gGc | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp12 | 304 | D304H | Gac | Cac | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 304 | D304Y | Gac | Tac | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp12 | 304 | D304del | GAC | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp12 | 304 | D304D | gaC | gaT | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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