CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 302

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12302L302LL4694LsynttGttA3122580.82692314344-14346
ORF1ab/nsp12302L302LL4694LsynTtgCtg312530.16987214344-14346
ORF1ab/nsp12302L302LL4694LsynTtGCtA31210.0032051314344-14346
ORF1ab/nsp12302L302FL4694FnonsynttGttT2692670.99256514344-14346
ORF1ab/nsp12302L302FL4694FnonsynttGttC26920.0074349414344-14346
ORF1ab/nsp12302L302SL4694SnonsyntTgtCg2492460.98795214344-14346
ORF1ab/nsp12302L302SL4694SnonsyntTGtCA24920.0080321314344-14346
ORF1ab/nsp12302L302SL4694SnonsynTTGAGC24910.0040160614344-14346
ORF1ab/nsp12302L302delL4694deldelTTG---8888114344-14346
ORF1ab/nsp12302L302ML4694MnonsynTtgAtg4444114344-14346
ORF1ab/nsp12302L302VL4694VnonsynTtgGtg19170.89473714344-14346
ORF1ab/nsp12302L302VL4694VnonsynTtGGtA1920.10526314344-14346
ORF1ab/nsp12302L302WL4694WnonsyntTgtGg1212114344-14346
ORF1ab/nsp12302L302del1L4694del1delttGtt-1090.914344-14346
ORF1ab/nsp12302L302del1L4694del1delTTGAC-1010.114344-14346
ORF1ab/nsp12302L302del2L4694del2deltTGt--540.814344-14346
ORF1ab/nsp12302L302del2L4694del2delTTg--g510.214344-14346
ORF1ab/nsp12302L302IL4694InonsynTtGAtA22114344-14346
ORF1ab/nsp12302L302RL4694RnonsynTTGAGA11114344-14346
ORF1ab/nsp12302L302PL4694PnonsynTTGCCA11114344-14346
ORF1ab/nsp12302L302YL4694YnonsyntTGtAT11114344-14346
ORF1ab/nsp12302L302QL4694QnonsynTTGCAA11114344-14346

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12302L302LttGttA258312All0.000049
ORF1ab/nsp12302L302LTtgCtg53312All0.00001
ORF1ab/nsp12302L302LTtGCtA1312All0
ORF1ab/nsp12302L302FttGttT267269All0.000051
ORF1ab/nsp12302L302FttGttC2269All0
ORF1ab/nsp12302L302StTgtCg246249All0.000047
ORF1ab/nsp12302L302StTGtCA2249All0
ORF1ab/nsp12302L302STTGAGC1249All0
ORF1ab/nsp12302L302StTgtCg150150C.2.11
ORF1ab/nsp12302L302delTTG---8888All0.000017
ORF1ab/nsp12302L302LttGttA6170B.1.1.70.000055
ORF1ab/nsp12302L302LTtgCtg870B.1.1.70.000007
ORF1ab/nsp12302L302LTtGCtA170B.1.1.70.000001
ORF1ab/nsp12302L302LttGttA5864AY.30.000577
ORF1ab/nsp12302L302LTtgCtg664AY.30.00006
ORF1ab/nsp12302L302StTgtCg6262C.21
ORF1ab/nsp12302L302MTtgAtg4444All0.000008
ORF1ab/nsp12302L302MTtgAtg4141B.1.1.70.000037
ORF1ab/nsp12302L302FttGttT3838B.1.1.70.000034
ORF1ab/nsp12302L302delTTG---3636B.1.1.70.000032
ORF1ab/nsp12302L302FttGttT3030B.1.617.20.000113
ORF1ab/nsp12302L302FttGttT2626AY.40.00004
ORF1ab/nsp12302L302VTtgGtg1719All0.000003
ORF1ab/nsp12302L302VTtGGtA219All0
ORF1ab/nsp12302L302FttGttT1818AY.390.000445
ORF1ab/nsp12302L302FttGttT1717B.10.000156
ORF1ab/nsp12302L302LTtgCtg1117B.1.4290.000259
ORF1ab/nsp12302L302LttGttA617B.1.4290.000141
ORF1ab/nsp12302L302LttGttA1415AY.430.000062
ORF1ab/nsp12302L302LTtgCtg115AY.430.000004
ORF1ab/nsp12302L302LTtgCtg714B.1.617.20.000026
ORF1ab/nsp12302L302LttGttA714B.1.617.20.000026
ORF1ab/nsp12302L302FttGttT1313AY.1030.000081
ORF1ab/nsp12302L302LttGttA1313B.1.20.000114
ORF1ab/nsp12302L302WtTgtGg1212All0.000002
ORF1ab/nsp12302L302FttGttT1212B.1.617.10.001548
ORF1ab/nsp12302L302LttGttA911AY.40.000014
ORF1ab/nsp12302L302LTtgCtg211AY.40.000003
ORF1ab/nsp12302L302FttGttT1111AY.50.000227
ORF1ab/nsp12302L302FttGttT1111B.1.20.000097
ORF1ab/nsp12302L302del1ttGtt-910All0.000002
ORF1ab/nsp12302L302del1TTGAC-110All0
ORF1ab/nsp12302L302delTTG---88AY.40.000012
ORF1ab/nsp12302L302LttGttA78AY.440.000043
ORF1ab/nsp12302L302LTtgCtg18AY.440.000006
ORF1ab/nsp12302L302StTgtCg88B.1.1.10.002614
ORF1ab/nsp12302L302VTtgGtg88B.1.1.70.000007
ORF1ab/nsp12302L302FttGttT77AY.260.000198
ORF1ab/nsp12302L302LttGttA77AY.270.000453
ORF1ab/nsp12302L302WtTgtGg77B.10.000064
ORF1ab/nsp12302L302delTTG---66AY.430.000027
ORF1ab/nsp12302L302StTgtCg66B.10.000055
ORF1ab/nsp12302L302del1ttGtt-56B.1.1.70.000004
ORF1ab/nsp12302L302del1TTGAC-16B.1.1.70.000001
ORF1ab/nsp12302L302FttGttT66B.1.2430.000418
ORF1ab/nsp12302L302LttGttA66B.1.5260.000141
ORF1ab/nsp12302L302del2tTGt--45All0.000001
ORF1ab/nsp12302L302del2TTg--g15All0
ORF1ab/nsp12302L302delTTG---55AY.250.00003
ORF1ab/nsp12302L302FttGttT55AY.30.00005
ORF1ab/nsp12302L302LttGttA55AY.300.001979
ORF1ab/nsp12302L302LttGttA45B.10.000037
ORF1ab/nsp12302L302LTtgCtg15B.10.000009
ORF1ab/nsp12302L302LttGttA55B.1.177.810.000947
ORF1ab/nsp12302L302LttGttA44AY.20.001425
ORF1ab/nsp12302L302FttGttT44AY.430.000018
ORF1ab/nsp12302L302FttGttT44B.1.1.2160.003562
ORF1ab/nsp12302L302LttGttA23AY.1030.000012
ORF1ab/nsp12302L302LTtgCtg13AY.1030.000006
ORF1ab/nsp12302L302LttGttA33AY.1180.000188
ORF1ab/nsp12302L302LttGttA33AY.200.000117
ORF1ab/nsp12302L302LttGttA33AY.290.000047
ORF1ab/nsp12302L302FttGttT33AY.330.0002
ORF1ab/nsp12302L302LttGttA33AY.340.000291
ORF1ab/nsp12302L302StTgtCg33AY.40.000005
ORF1ab/nsp12302L302delTTG---33AY.4.50.000322
ORF1ab/nsp12302L302FttGttT33AY.470.000093
ORF1ab/nsp12302L302LTtgCtg33AY.570.001969
ORF1ab/nsp12302L302StTgtCg33B.1.10.000054
ORF1ab/nsp12302L302StTgtCg23B.1.1.70.000002
ORF1ab/nsp12302L302del2tTGt--23B.1.1.70.000002
ORF1ab/nsp12302L302del2TTg--g13B.1.1.70.000001
ORF1ab/nsp12302L302STTGAGC13B.1.1.70.000001
ORF1ab/nsp12302L302FttGttT33B.1.1600.000094
ORF1ab/nsp12302L302delTTG---33B.1.1770.00004
ORF1ab/nsp12302L302LttGttA33B.1.2430.000209
ORF1ab/nsp12302L302FttGttT33B.1.3510.000089
ORF1ab/nsp12302L302FttGttT33B.1.3960.002117
ORF1ab/nsp12302L302FttGttT33B.1.5250.000339
ORF1ab/nsp12302L302FttGttT33C.350.002322
ORF1ab/nsp12302L302LttGttA33P.10.000047
ORF1ab/nsp12302L302VTtGGtA220.111111
ORF1ab/nsp12302L302delTTG---220.111111
ORF1ab/nsp12302L302StTGtCA220.111111
ORF1ab/nsp12302L302LTtgCtg220.111111
ORF1ab/nsp12302L302ITtGAtA22All0
ORF1ab/nsp12302L302FttGttT22AY.200.000078
ORF1ab/nsp12302L302LttGttA22AY.250.000012
ORF1ab/nsp12302L302FttGttT22AY.250.000012
ORF1ab/nsp12302L302LttGttA22AY.3.10.000171
ORF1ab/nsp12302L302FttGttT22AY.410.000588
ORF1ab/nsp12302L302FttGttT22AY.440.000012
ORF1ab/nsp12302L302delTTG---22B.10.000018
ORF1ab/nsp12302L302delTTG---22B.1.10.000036
ORF1ab/nsp12302L302LttGttA22B.1.10.000036
ORF1ab/nsp12302L302ITtGAtA22B.1.1.70.000002
ORF1ab/nsp12302L302WtTgtGg22B.1.1.70.000002
ORF1ab/nsp12302L302LttGttA12B.1.1600.000031
ORF1ab/nsp12302L302LTtgCtg12B.1.1600.000031
ORF1ab/nsp12302L302LTtgCtg22B.1.36.290.001035
ORF1ab/nsp12302L302LttGttA22B.1.36.80.002
ORF1ab/nsp12302L302FttGttT22B.1.36.80.002
ORF1ab/nsp12302L302FttGttT22B.1.4700.002809
ORF1ab/nsp12302L302VTtgGtg22B.60.00182
ORF1ab/nsp12302L302FttGttT22C.370.000232
ORF1ab/nsp12302L302FttGttT12D.20.000075
ORF1ab/nsp12302L302FttGttC12D.20.000075
ORF1ab/nsp12302L302FttGttT22P.10.000032
ORF1ab/nsp12302L302LTtgCtg22P.1.140.000096
ORF1ab/nsp12302L302LttGttA22Q.30.00029
ORF1ab/nsp12302L302FttGttT11A.2.50.000499
ORF1ab/nsp12302L302LttGttA11A.2.5.20.001572
ORF1ab/nsp12302L302FttGttT11AH.20.012048
ORF1ab/nsp12302L302PTTGCCA11All0
ORF1ab/nsp12302L302QTTGCAA11All0
ORF1ab/nsp12302L302RTTGAGA11All0
ORF1ab/nsp12302L302YtTGtAT11All0
ORF1ab/nsp12302L302LttGttA11AW.10.003049
ORF1ab/nsp12302L302LttGttA11AY.1000.000046
ORF1ab/nsp12302L302VTtgGtg11AY.1030.000006
ORF1ab/nsp12302L302LttGttA11AY.1060.000335
ORF1ab/nsp12302L302MTtgAtg11AY.1110.000183
ORF1ab/nsp12302L302del1ttGtt-11AY.1170.000085
ORF1ab/nsp12302L302FttGttT11AY.1170.000085
ORF1ab/nsp12302L302LttGttA11AY.1190.000035
ORF1ab/nsp12302L302delTTG---11AY.190.00114
ORF1ab/nsp12302L302LttGttA11AY.230.00007
ORF1ab/nsp12302L302LttGttA11AY.23.10.000417
ORF1ab/nsp12302L302LTtgCtg11AY.240.000431
ORF1ab/nsp12302L302FttGttT11AY.270.000065
ORF1ab/nsp12302L302FttGttT11AY.290.000016
ORF1ab/nsp12302L302delTTG---11AY.290.000016
ORF1ab/nsp12302L302delTTG---11AY.30.00001
ORF1ab/nsp12302L302StTgtCg11AY.300.000396
ORF1ab/nsp12302L302FttGttT11AY.320.000532
ORF1ab/nsp12302L302LttGttA11AY.34.10.00051
ORF1ab/nsp12302L302delTTG---11AY.360.000148
ORF1ab/nsp12302L302FttGttT11AY.360.000148
ORF1ab/nsp12302L302FttGttT11AY.39.1.10.000725
ORF1ab/nsp12302L302del1ttGtt-11AY.40.000002
ORF1ab/nsp12302L302VTtgGtg11AY.40.000002
ORF1ab/nsp12302L302LttGttA11AY.4.20.000022
ORF1ab/nsp12302L302StTgtCg11AY.4.20.000022
ORF1ab/nsp12302L302FttGttT11AY.4.20.000022
ORF1ab/nsp12302L302FttGttT11AY.4.50.000107
ORF1ab/nsp12302L302VTtgGtg11AY.4.50.000107
ORF1ab/nsp12302L302del1ttGtt-11AY.4.50.000107
ORF1ab/nsp12302L302del1ttGtt-11AY.430.000004
ORF1ab/nsp12302L302StTgtCg11AY.460.000104
ORF1ab/nsp12302L302FttGttT11AY.46.60.000072
ORF1ab/nsp12302L302StTgtCg11AY.470.000031
ORF1ab/nsp12302L302StTgtCg11AY.50.000021
ORF1ab/nsp12302L302LttGttA11AY.50.000021
ORF1ab/nsp12302L302LttGttA11AY.590.00053
ORF1ab/nsp12302L302delTTG---11AY.600.000938
ORF1ab/nsp12302L302LttGttA11AY.610.000105
ORF1ab/nsp12302L302delTTG---11AY.670.000464
ORF1ab/nsp12302L302FttGttT11AY.750.000056
ORF1ab/nsp12302L302FttGttT11AY.75.10.00018
ORF1ab/nsp12302L302FttGttT11AY.830.001724
ORF1ab/nsp12302L302delTTG---11AY.840.000437
ORF1ab/nsp12302L302delTTG---11AY.850.000427
ORF1ab/nsp12302L302FttGttT11AY.900.000684
ORF1ab/nsp12302L302LttGttA11AY.980.000079
ORF1ab/nsp12302L302delTTG---11AY.990.001049
ORF1ab/nsp12302L302VTtgGtg11B0.000128
ORF1ab/nsp12302L302FttGttT11B.1.1.1210.002427
ORF1ab/nsp12302L302StTgtCg11B.1.1.1640.005155
ORF1ab/nsp12302L302LttGttA11B.1.1.1860.003436
ORF1ab/nsp12302L302MTtgAtg11B.1.1.2030.016949
ORF1ab/nsp12302L302FttGttT11B.1.1.2140.000055
ORF1ab/nsp12302L302delTTG---11B.1.1.2210.010101
ORF1ab/nsp12302L302FttGttC11B.1.1.2370.005405
ORF1ab/nsp12302L302LTtgCtg11B.1.1.250.000569
ORF1ab/nsp12302L302LTtgCtg11B.1.1.2610.008621
ORF1ab/nsp12302L302VTtgGtg11B.1.1.2650.003155
ORF1ab/nsp12302L302StTgtCg11B.1.1.280.000311
ORF1ab/nsp12302L302FttGttT11B.1.1.2840.000107
ORF1ab/nsp12302L302delTTG---11B.1.1.3110.000358
ORF1ab/nsp12302L302FttGttT11B.1.1.4850.016667
ORF1ab/nsp12302L302PTTGCCA11B.1.1.70.000001
ORF1ab/nsp12302L302delTTG---11B.1.1.700.000341
ORF1ab/nsp12302L302VTtgGtg11B.1.1570.002985
ORF1ab/nsp12302L302FttGttT11B.1.1570.002985
ORF1ab/nsp12302L302WtTgtGg11B.1.1770.000013
ORF1ab/nsp12302L302WtTgtGg11B.1.177.150.000631
ORF1ab/nsp12302L302FttGttT11B.1.177.170.000821
ORF1ab/nsp12302L302delTTG---11B.1.177.180.00116
ORF1ab/nsp12302L302LTtgCtg11B.1.177.210.000076
ORF1ab/nsp12302L302del2tTGt--11B.1.177.540.000606
ORF1ab/nsp12302L302delTTG---11B.1.177.870.000728
ORF1ab/nsp12302L302VTtgGtg11B.1.20.000009
ORF1ab/nsp12302L302StTgtCg11B.1.2210.000071
ORF1ab/nsp12302L302FttGttT11B.1.2210.000071
ORF1ab/nsp12302L302LttGttA11B.1.2340.000132
ORF1ab/nsp12302L302delTTG---11B.1.258.30.001675
ORF1ab/nsp12302L302LTtgCtg11B.1.3510.00003
ORF1ab/nsp12302L302StTgtCg11B.1.3510.00003
ORF1ab/nsp12302L302FttGttT11B.1.3560.001727
ORF1ab/nsp12302L302RTTGAGA11B.1.360.000146
ORF1ab/nsp12302L302LttGttA11B.1.360.000146
ORF1ab/nsp12302L302delTTG---11B.1.36.170.000494
ORF1ab/nsp12302L302delTTG---11B.1.36.290.000517
ORF1ab/nsp12302L302LttGttA11B.1.4270.00005
ORF1ab/nsp12302L302FttGttT11B.1.4360.001029
ORF1ab/nsp12302L302StTgtCg11B.1.438.10.000107
ORF1ab/nsp12302L302FttGttT11B.1.466.20.000391
ORF1ab/nsp12302L302delTTG---11B.1.5250.000113
ORF1ab/nsp12302L302LttGttA11B.1.5250.000113
ORF1ab/nsp12302L302FttGttT11B.1.5600.00463
ORF1ab/nsp12302L302StTgtCg11B.1.5820.000491
ORF1ab/nsp12302L302YtTGtAT11B.1.617.20.000004
ORF1ab/nsp12302L302delTTG---11B.1.6210.000089
ORF1ab/nsp12302L302QTTGCAA11B.1.6210.000089
ORF1ab/nsp12302L302StTgtCg11B.1.6230.000536
ORF1ab/nsp12302L302LttGttA11B.1.6370.000073
ORF1ab/nsp12302L302MTtgAtg11B.40.002208
ORF1ab/nsp12302L302LttGttA11C.370.000116
ORF1ab/nsp12302L302WtTgtGg11P.10.000016
ORF1ab/nsp12302L302delTTG---11P.1.10.000318
ORF1ab/nsp12302L302del2tTGt--11P.1.100.000269
ORF1ab/nsp12302L302FttGttT11P.1.150.000232
ORF1ab/nsp12302L302LttGttA11P.1.170.000162
ORF1ab/nsp12302L302delTTG---11Q.20.000613