CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 300

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12300N300NN4692NsynaaCaaT1202112021114338-14340
ORF1ab/nsp12300N300DN4692DnonsynAacGac204204114338-14340
ORF1ab/nsp12300N300SN4692SnonsynaAcaGc166166114338-14340
ORF1ab/nsp12300N300delN4692deldelAAC---8484114338-14340
ORF1ab/nsp12300N300IN4692InonsynaAcaTc3535114338-14340
ORF1ab/nsp12300N300KN4692KnonsynaaCaaA1090.914338-14340
ORF1ab/nsp12300N300KN4692KnonsynaaCaaG1010.114338-14340
ORF1ab/nsp12300N300YN4692YnonsynAacTac88114338-14340
ORF1ab/nsp12300N300TN4692TnonsynaAcaCc530.614338-14340
ORF1ab/nsp12300N300TN4692TnonsynaACaCG520.414338-14340
ORF1ab/nsp12300N300RN4692RnonsynaACaGA33114338-14340
ORF1ab/nsp12300N300del1N4692del1delAaCCa-210.514338-14340
ORF1ab/nsp12300N300del1N4692del1delAac-ac210.514338-14340
ORF1ab/nsp12300N300HN4692HnonsynAacCac210.514338-14340
ORF1ab/nsp12300N300HN4692HnonsynAaCCaT210.514338-14340
ORF1ab/nsp12300N300GN4692GnonsynAACGGT11114338-14340
ORF1ab/nsp12300N300XN4692XnonsynAaCTaA11114338-14340
ORF1ab/nsp12300N300FN4692FnonsynAACTTT11114338-14340
ORF1ab/nsp12300N300CN4692CnonsynAACTGT11114338-14340

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12300N300NaaCaaT1202112021All0.002299
ORF1ab/nsp12300N300NaaCaaT1107511075R.10.99685
ORF1ab/nsp12300N300NaaCaaT262262B.1.10.004753
ORF1ab/nsp12300N300DAacGac204204All0.000039
ORF1ab/nsp12300N300SaAcaGc166166All0.000032
ORF1ab/nsp12300N300DAacGac113113B.1.1.70.000101
ORF1ab/nsp12300N300NaaCaaT100100B.1.1.2200.185874
ORF1ab/nsp12300N300delAAC---8484All0.000016
ORF1ab/nsp12300N300NaaCaaT8181B.10.000742
ORF1ab/nsp12300N300SaAcaGc6666B.1.1.70.000059
ORF1ab/nsp12300N300NaaCaaT6161B.1.1.70.000055
ORF1ab/nsp12300N300NaaCaaT5757B.1.617.20.000215
ORF1ab/nsp12300N300NaaCaaT5555AY.30.000547
ORF1ab/nsp12300N300NaaCaaT3939B.1.20.000343
ORF1ab/nsp12300N300delAAC---3636B.1.1.70.000032
ORF1ab/nsp12300N300IaAcaTc3535All0.000007
ORF1ab/nsp12300N300SaAcaGc3434AY.1030.000211
ORF1ab/nsp12300N300NaaCaaT3434B.1.1.5250.185792
ORF1ab/nsp12300N300NaaCaaT2424AY.40.000037
ORF1ab/nsp12300N300IaAcaTc2222AY.40.000034
ORF1ab/nsp12300N300SaAcaGc2222AY.40.000034
ORF1ab/nsp12300N300NaaCaaT1717B.1.1.3170.006999
ORF1ab/nsp12300N300NaaCaaT1616B.1.1770.000211
ORF1ab/nsp12300N300NaaCaaT1414AY.1030.000087
ORF1ab/nsp12300N300NaaCaaT1414B.1.4160.017766
ORF1ab/nsp12300N300NaaCaaT1313AY.350.00303
ORF1ab/nsp12300N300DAacGac1313B.1.20.000114
ORF1ab/nsp12300N300SaAcaGc1212AY.330.000801
ORF1ab/nsp12300N300NaaCaaT1212B.1.1.100.013378
ORF1ab/nsp12300N300NaaCaaT1111AY.390.000272
ORF1ab/nsp12300N300KaaCaaA910All0.000002
ORF1ab/nsp12300N300KaaCaaG110All0
ORF1ab/nsp12300N300NaaCaaT1010AY.250.00006
ORF1ab/nsp12300N300DAacGac99AY.40.000014
ORF1ab/nsp12300N300YAacTac88All0.000002
ORF1ab/nsp12300N300NaaCaaT88AY.1170.000676
ORF1ab/nsp12300N300DAacGac88B.1.1.2140.000444
ORF1ab/nsp12300N300DAacGac88P.1.170.001294
ORF1ab/nsp12300N300DAacGac77AY.320.003727
ORF1ab/nsp12300N300delAAC---77AY.40.000011
ORF1ab/nsp12300N300DAacGac77B.1.617.20.000026
ORF1ab/nsp12300N300delAAC---66AY.430.000027
ORF1ab/nsp12300N300NaaCaaT66B.1.1.2220.001224
ORF1ab/nsp12300N300NaaCaaT66D.20.00045
ORF1ab/nsp12300N300TaAcaCc35All0.000001
ORF1ab/nsp12300N300TaACaCG25All0
ORF1ab/nsp12300N300NaaCaaT55AY.16.10.00235
ORF1ab/nsp12300N300DAacGac55B.1.351.20.001513
ORF1ab/nsp12300N300delAAC---44AY.250.000024
ORF1ab/nsp12300N300NaaCaaT44AY.430.000018
ORF1ab/nsp12300N300NaaCaaT44AY.440.000024
ORF1ab/nsp12300N300NaaCaaT44AY.9.10.000335
ORF1ab/nsp12300N300DAacGac44B.10.000037
ORF1ab/nsp12300N300RaACaGA33All0.000001
ORF1ab/nsp12300N300NaaCaaT33AY.1200.000112
ORF1ab/nsp12300N300delAAC---33AY.4.50.000322
ORF1ab/nsp12300N300DAacGac33AY.430.000013
ORF1ab/nsp12300N300SaAcaGc33AY.440.000018
ORF1ab/nsp12300N300YAacTac33B.10.000027
ORF1ab/nsp12300N300NaaCaaT33B.1.1.390.001529
ORF1ab/nsp12300N300NaaCaaT33B.1.1.5210.016043
ORF1ab/nsp12300N300NaaCaaT33B.1.1080.017442
ORF1ab/nsp12300N300SaAcaGc33B.1.2320.001612
ORF1ab/nsp12300N300SaAcaGc33B.1.3510.000089
ORF1ab/nsp12300N300NaaCaaT33B.1.5240.004219
ORF1ab/nsp12300N300DAacGac33P.10.000047
ORF1ab/nsp12300N300RaACaGA220.111111
ORF1ab/nsp12300N300delAAC---220.111111
ORF1ab/nsp12300N300TaACaCG220.111111
ORF1ab/nsp12300N300HAaCCaT12All0
ORF1ab/nsp12300N300del1AaCCa-12All0
ORF1ab/nsp12300N300del1Aac-ac12All0
ORF1ab/nsp12300N300HAacCac12All0
ORF1ab/nsp12300N300NaaCaaT22AY.1070.000932
ORF1ab/nsp12300N300DAacGac22AY.140.000176
ORF1ab/nsp12300N300NaaCaaT22AY.200.000078
ORF1ab/nsp12300N300DAacGac22AY.250.000012
ORF1ab/nsp12300N300DAacGac22AY.4.20.000043
ORF1ab/nsp12300N300NaaCaaT22AY.480.00093
ORF1ab/nsp12300N300IaAcaTc22AY.60.000082
ORF1ab/nsp12300N300DAacGac22AY.670.000929
ORF1ab/nsp12300N300SaAcaGc22AY.9.20.000073
ORF1ab/nsp12300N300NaaCaaT22AY.99.20.000184
ORF1ab/nsp12300N300delAAC---22B.10.000018
ORF1ab/nsp12300N300NaaCaaT22B.1.1.250.001137
ORF1ab/nsp12300N300NaaCaaT22B.1.1.2630.003115
ORF1ab/nsp12300N300NaaCaaT22B.1.1.2910.001485
ORF1ab/nsp12300N300NaaCaaT22B.1.1.510.003436
ORF1ab/nsp12300N300NaaCaaT22B.1.1.5190.000079
ORF1ab/nsp12300N300NaaCaaT22B.1.1.830.00542
ORF1ab/nsp12300N300delAAC---22B.1.1770.000026
ORF1ab/nsp12300N300SaAcaGc22B.1.20.000018
ORF1ab/nsp12300N300NaaCaaT22B.1.2580.000133
ORF1ab/nsp12300N300NaaCaaT22B.1.3490.00143
ORF1ab/nsp12300N300NaaCaaT22B.1.5680.002222
ORF1ab/nsp12300N300IaAcaTc22B.1.617.20.000008
ORF1ab/nsp12300N300SaAcaGc22B.1.617.20.000008
ORF1ab/nsp12300N300KaaCaaA12D.20.000075
ORF1ab/nsp12300N300KaaCaaG12D.20.000075
ORF1ab/nsp12300N300NaaCaaT22P.10.000032
ORF1ab/nsp12300N300NaaCaaT22Q.70.002222
ORF1ab/nsp12300N300DAacGac110.055556
ORF1ab/nsp12300N300delAAC---11A0.000387
ORF1ab/nsp12300N300SaAcaGc11A0.000387
ORF1ab/nsp12300N300KaaCaaA11A.190.009434
ORF1ab/nsp12300N300SaAcaGc11A.2.50.000499
ORF1ab/nsp12300N300XAaCTaA11All0
ORF1ab/nsp12300N300FAACTTT11All0
ORF1ab/nsp12300N300CAACTGT11All0
ORF1ab/nsp12300N300GAACGGT11All0
ORF1ab/nsp12300N300SaAcaGc11AW.10.003049
ORF1ab/nsp12300N300DAacGac11AY.1020.000027
ORF1ab/nsp12300N300IaAcaTc11AY.1070.000466
ORF1ab/nsp12300N300YAacTac11AY.1170.000085
ORF1ab/nsp12300N300IaAcaTc11AY.1200.000037
ORF1ab/nsp12300N300NaaCaaT11AY.1210.000135
ORF1ab/nsp12300N300DAacGac11AY.160.00038
ORF1ab/nsp12300N300delAAC---11AY.190.00114
ORF1ab/nsp12300N300TaAcaCc11AY.200.000039
ORF1ab/nsp12300N300SaAcaGc11AY.230.00007
ORF1ab/nsp12300N300YAacTac11AY.250.000006
ORF1ab/nsp12300N300KaaCaaA11AY.250.000006
ORF1ab/nsp12300N300TaAcaCc11AY.270.000065
ORF1ab/nsp12300N300NaaCaaT11AY.290.000016
ORF1ab/nsp12300N300DAacGac11AY.290.000016
ORF1ab/nsp12300N300delAAC---11AY.290.000016
ORF1ab/nsp12300N300KaaCaaA11AY.30.00001
ORF1ab/nsp12300N300delAAC---11AY.30.00001
ORF1ab/nsp12300N300SaAcaGc11AY.30.00001
ORF1ab/nsp12300N300DAacGac11AY.30.00001
ORF1ab/nsp12300N300NaaCaaT11AY.3.10.000085
ORF1ab/nsp12300N300SaAcaGc11AY.3.10.000085
ORF1ab/nsp12300N300DAacGac11AY.300.000396
ORF1ab/nsp12300N300NaaCaaT11AY.330.000067
ORF1ab/nsp12300N300delAAC---11AY.360.000148
ORF1ab/nsp12300N300KaaCaaA11AY.390.000025
ORF1ab/nsp12300N300SaAcaGc11AY.39.10.00004
ORF1ab/nsp12300N300YAacTac11AY.40.000002
ORF1ab/nsp12300N300IaAcaTc11AY.4.20.000022
ORF1ab/nsp12300N300NaaCaaT11AY.4.20.000022
ORF1ab/nsp12300N300NaaCaaT11AY.4.50.000107
ORF1ab/nsp12300N300DAacGac11AY.420.00004
ORF1ab/nsp12300N300SaAcaGc11AY.430.000004
ORF1ab/nsp12300N300NaaCaaT11AY.460.000104
ORF1ab/nsp12300N300SaAcaGc11AY.46.40.000165
ORF1ab/nsp12300N300NaaCaaT11AY.50.000021
ORF1ab/nsp12300N300DAacGac11AY.50.000021
ORF1ab/nsp12300N300KaaCaaA11AY.540.000095
ORF1ab/nsp12300N300delAAC---11AY.600.000938
ORF1ab/nsp12300N300RaACaGA11AY.670.000464
ORF1ab/nsp12300N300IaAcaTc11AY.70.000196
ORF1ab/nsp12300N300NaaCaaT11AY.750.000056
ORF1ab/nsp12300N300IaAcaTc11AY.80.000606
ORF1ab/nsp12300N300delAAC---11AY.840.000437
ORF1ab/nsp12300N300SaAcaGc11AY.850.000427
ORF1ab/nsp12300N300DAacGac11AY.9.20.000037
ORF1ab/nsp12300N300NaaCaaT11AY.960.002075
ORF1ab/nsp12300N300delAAC---11AY.990.001049
ORF1ab/nsp12300N300KaaCaaA11B0.000128
ORF1ab/nsp12300N300TaAcaCc11B.10.000009
ORF1ab/nsp12300N300SaAcaGc11B.10.000009
ORF1ab/nsp12300N300IaAcaTc11B.1.10.000018
ORF1ab/nsp12300N300del1AaCCa-11B.1.10.000018
ORF1ab/nsp12300N300NaaCaaT11B.1.1.10.000327
ORF1ab/nsp12300N300NaaCaaT11B.1.1.1960.005714
ORF1ab/nsp12300N300NaaCaaT11B.1.1.1980.001468
ORF1ab/nsp12300N300NaaCaaT11B.1.1.2140.000055
ORF1ab/nsp12300N300delAAC---11B.1.1.2210.010101
ORF1ab/nsp12300N300NaaCaaT11B.1.1.2360.006897
ORF1ab/nsp12300N300NaaCaaT11B.1.1.2580.003257
ORF1ab/nsp12300N300DAacGac11B.1.1.2840.000107
ORF1ab/nsp12300N300NaaCaaT11B.1.1.3050.003861
ORF1ab/nsp12300N300delAAC---11B.1.1.3110.000358
ORF1ab/nsp12300N300NaaCaaT11B.1.1.330.000421
ORF1ab/nsp12300N300NaaCaaT11B.1.1.4640.001473
ORF1ab/nsp12300N300NaaCaaT11B.1.1.5220.017241
ORF1ab/nsp12300N300NaaCaaT11B.1.1.5280.004808
ORF1ab/nsp12300N300NaaCaaT11B.1.1.560.017857
ORF1ab/nsp12300N300GAACGGT11B.1.1.70.000001
ORF1ab/nsp12300N300del1Aac-ac11B.1.1.70.000001
ORF1ab/nsp12300N300CAACTGT11B.1.1.70.000001
ORF1ab/nsp12300N300XAaCTaA11B.1.1.70.000001
ORF1ab/nsp12300N300delAAC---11B.1.1.700.000341
ORF1ab/nsp12300N300NaaCaaT11B.1.1.80.003584
ORF1ab/nsp12300N300NaaCaaT11B.1.1600.000031
ORF1ab/nsp12300N300DAacGac11B.1.1600.000031
ORF1ab/nsp12300N300IaAcaTc11B.1.160.160.000929
ORF1ab/nsp12300N300NaaCaaT11B.1.1610.017241
ORF1ab/nsp12300N300KaaCaaA11B.1.1770.000013
ORF1ab/nsp12300N300SaAcaGc11B.1.1770.000013
ORF1ab/nsp12300N300delAAC---11B.1.177.180.00116
ORF1ab/nsp12300N300NaaCaaT11B.1.177.230.003236
ORF1ab/nsp12300N300SaAcaGc11B.1.177.540.000606
ORF1ab/nsp12300N300NaaCaaT11B.1.177.840.006667
ORF1ab/nsp12300N300delAAC---11B.1.177.870.000728
ORF1ab/nsp12300N300YAacTac11B.1.20.000009
ORF1ab/nsp12300N300KaaCaaA11B.1.20.000009
ORF1ab/nsp12300N300SaAcaGc11B.1.2060.000816
ORF1ab/nsp12300N300NaaCaaT11B.1.214.20.0006
ORF1ab/nsp12300N300IaAcaTc11B.1.2320.000537
ORF1ab/nsp12300N300NaaCaaT11B.1.2340.000132
ORF1ab/nsp12300N300SaAcaGc11B.1.2580.000067
ORF1ab/nsp12300N300IaAcaTc11B.1.2580.000067
ORF1ab/nsp12300N300delAAC---11B.1.258.30.001675
ORF1ab/nsp12300N300NaaCaaT11B.1.2650.001271
ORF1ab/nsp12300N300HAacCac11B.1.360.000146
ORF1ab/nsp12300N300delAAC---11B.1.36.170.000494
ORF1ab/nsp12300N300NaaCaaT11B.1.36.190.009259
ORF1ab/nsp12300N300delAAC---11B.1.36.290.000517
ORF1ab/nsp12300N300NaaCaaT11B.1.3750.00082
ORF1ab/nsp12300N300DAacGac11B.1.3890.001002
ORF1ab/nsp12300N300NaaCaaT11B.1.4270.00005
ORF1ab/nsp12300N300NaaCaaT11B.1.4290.000024
ORF1ab/nsp12300N300NaaCaaT11B.1.4360.001029
ORF1ab/nsp12300N300NaaCaaT11B.1.4680.005714
ORF1ab/nsp12300N300NaaCaaT11B.1.5170.000427
ORF1ab/nsp12300N300delAAC---11B.1.5250.000113
ORF1ab/nsp12300N300DAacGac11B.1.5260.000024
ORF1ab/nsp12300N300YAacTac11B.1.5260.000024
ORF1ab/nsp12300N300NaaCaaT11B.1.5330.009615
ORF1ab/nsp12300N300NaaCaaT11B.1.5640.000426
ORF1ab/nsp12300N300delAAC---11B.1.5950.000261
ORF1ab/nsp12300N300NaaCaaT11B.1.5960.000087
ORF1ab/nsp12300N300DAacGac11B.1.5990.00365
ORF1ab/nsp12300N300NaaCaaT11B.1.6040.017241
ORF1ab/nsp12300N300NaaCaaT11B.1.617.10.000129
ORF1ab/nsp12300N300delAAC---11B.1.617.20.000004
ORF1ab/nsp12300N300delAAC---11B.1.6210.000089
ORF1ab/nsp12300N300DAacGac11B.1.6210.000089
ORF1ab/nsp12300N300HAaCCaT11B.1.6210.000089
ORF1ab/nsp12300N300NaaCaaT11B.230.002924
ORF1ab/nsp12300N300FAACTTT11B.40.002208
ORF1ab/nsp12300N300delAAC---11P.1.10.000318
ORF1ab/nsp12300N300NaaCaaT11P.1.140.000048
ORF1ab/nsp12300N300SaAcaGc11P.1.160.000374
ORF1ab/nsp12300N300SaAcaGc11Q.10.000126
ORF1ab/nsp12300N300delAAC---11Q.20.000613
ORF1ab/nsp12300N300DAacGac11Q.80.000165