CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 294 | Y294Y | Y4686Y | syn | taC | taT | 4913 | 4913 | 1 | 14320-14322 |
ORF1ab/nsp12 | 294 | Y294del | Y4686del | del | TAC | --- | 62 | 62 | 1 | 14320-14322 |
ORF1ab/nsp12 | 294 | Y294H | Y4686H | nonsyn | Tac | Cac | 11 | 9 | 0.818182 | 14320-14322 |
ORF1ab/nsp12 | 294 | Y294H | Y4686H | nonsyn | TaC | CaT | 11 | 2 | 0.181818 | 14320-14322 |
ORF1ab/nsp12 | 294 | Y294X | Y4686X | nonsyn | taC | taA | 6 | 3 | 0.5 | 14320-14322 |
ORF1ab/nsp12 | 294 | Y294X | Y4686X | nonsyn | taC | taG | 6 | 3 | 0.5 | 14320-14322 |
ORF1ab/nsp12 | 294 | Y294del1 | Y4686del1 | del | taC | ta- | 4 | 3 | 0.75 | 14320-14322 |
ORF1ab/nsp12 | 294 | Y294del1 | Y4686del1 | del | Tac | -ac | 4 | 1 | 0.25 | 14320-14322 |
ORF1ab/nsp12 | 294 | Y294N | Y4686N | nonsyn | Tac | Aac | 3 | 3 | 1 | 14320-14322 |
ORF1ab/nsp12 | 294 | Y294R | Y4686R | nonsyn | TAC | CGT | 3 | 2 | 0.666667 | 14320-14322 |
ORF1ab/nsp12 | 294 | Y294C | Y4686C | nonsyn | tAc | tGc | 3 | 2 | 0.666667 | 14320-14322 |
ORF1ab/nsp12 | 294 | Y294C | Y4686C | nonsyn | tAC | tGT | 3 | 1 | 0.333333 | 14320-14322 |
ORF1ab/nsp12 | 294 | Y294R | Y4686R | nonsyn | TAc | CGc | 3 | 1 | 0.333333 | 14320-14322 |
ORF1ab/nsp12 | 294 | Y294W | Y4686W | nonsyn | tAC | tGG | 2 | 2 | 1 | 14320-14322 |
ORF1ab/nsp12 | 294 | Y294D | Y4686D | nonsyn | Tac | Gac | 2 | 2 | 1 | 14320-14322 |
ORF1ab/nsp12 | 294 | Y294F | Y4686F | nonsyn | tAc | tTc | 2 | 2 | 1 | 14320-14322 |
ORF1ab/nsp12 | 294 | Y294del2 | Y4686del2 | del | tAC | t-- | 2 | 2 | 1 | 14320-14322 |
ORF1ab/nsp12 | 294 | Y294S | Y4686S | nonsyn | tAC | tCA | 2 | 1 | 0.5 | 14320-14322 |
ORF1ab/nsp12 | 294 | Y294S | Y4686S | nonsyn | tAc | tCc | 2 | 1 | 0.5 | 14320-14322 |
ORF1ab/nsp12 | 294 | Y294L | Y4686L | nonsyn | TAC | CTG | 1 | 1 | 1 | 14320-14322 |
ORF1ab/nsp12 | 294 | Y294Q | Y4686Q | nonsyn | TaC | CaG | 1 | 1 | 1 | 14320-14322 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 4913 | 4913 | All | 0.00094 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1095 | 1095 | AY.4 | 0.001704 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 811 | 811 | B.1.1.7 | 0.000726 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 506 | 506 | B.1.474 | 0.961977 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 283 | 283 | B.1 | 0.002592 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 182 | 182 | B.1.617.2 | 0.000685 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 139 | 139 | AY.43 | 0.000616 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 134 | 134 | AY.44 | 0.000816 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 124 | 124 | B.1.2 | 0.001092 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 94 | 94 | AY.4.2 | 0.002039 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 91 | 91 | AY.103 | 0.000565 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 82 | 82 | B.1.1 | 0.001488 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 81 | 81 | AY.25 | 0.000487 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 73 | 73 | B.1.622 | 0.948052 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 72 | 72 | P.1 | 0.001134 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 71 | 71 | B.1.629 | 0.946667 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 68 | 68 | AY.3 | 0.000676 |
ORF1ab/nsp12 | 294 | Y294del | TAC | --- | 62 | 62 | All | 0.000012 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 52 | 52 | AY.100 | 0.002392 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 41 | 41 | B.1.1.519 | 0.001628 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 38 | 38 | B.1.177 | 0.0005 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 37 | 37 | AY.48 | 0.017209 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 32 | 32 | AY.36 | 0.004743 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 32 | 32 | B.1.1.50 | 0.021724 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 31 | 31 | AY.39 | 0.000766 |
ORF1ab/nsp12 | 294 | Y294del | TAC | --- | 30 | 30 | B.1.1.7 | 0.000027 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 30 | 30 | B.1.623 | 0.016094 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 28 | 28 | C.37 | 0.00325 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 22 | 22 | AY.102 | 0.000583 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 21 | 21 | AY.118 | 0.001316 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 21 | 21 | B.1.526 | 0.000494 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 18 | 18 | B.1.221 | 0.001279 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 17 | 17 | AD.2 | 0.003722 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 16 | 16 | B.1.429 | 0.000376 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 14 | 14 | B.1.596 | 0.00122 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 13 | 13 | B.1.1.434 | 0.004531 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 13 | 13 | B.1.351 | 0.000386 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 12 | 12 | AY.14 | 0.001056 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 12 | 12 | B.1.243 | 0.000835 |
ORF1ab/nsp12 | 294 | Y294H | Tac | Cac | 9 | 11 | All | 0.000002 |
ORF1ab/nsp12 | 294 | Y294H | TaC | CaT | 2 | 11 | All | 0 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 11 | 11 | B.1.1.263 | 0.017134 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 11 | 11 | B.1.631 | 0.037037 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 10 | 10 | B.1.160 | 0.000312 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 10 | 10 | B.1.619 | 0.008711 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 10 | 10 | C.36.3 | 0.005672 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 9 | 9 | A.21 | 0.024931 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 9 | 9 | B.1.36 | 0.001313 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 9 | 9 | Q.3 | 0.001305 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 8 | 8 | B.1.1.153 | 0.008762 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 8 | 8 | B.1.239 | 0.009768 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 8 | 8 | R.1 | 0.00072 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 7 | 7 | B.1.177.60 | 0.001529 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 7 | 7 | B.1.180 | 0.35 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 7 | 7 | B.1.36.27 | 0.005344 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 7 | 7 | B.1.621 | 0.00062 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 7 | 7 | P.1.15 | 0.001626 |
ORF1ab/nsp12 | 294 | Y294X | taC | taA | 3 | 6 | All | 0.000001 |
ORF1ab/nsp12 | 294 | Y294X | taC | taG | 3 | 6 | All | 0.000001 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 6 | 6 | AY.121 | 0.000812 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 6 | 6 | B.1.1.28 | 0.001867 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 6 | 6 | B.1.1.300 | 0.064516 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 6 | 6 | B.1.617.1 | 0.000774 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 5 | 5 | AY.34 | 0.000485 |
ORF1ab/nsp12 | 294 | Y294del | TAC | --- | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 5 | 5 | B.1.1.25 | 0.002843 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 5 | 5 | B.1.1.291 | 0.003712 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 5 | 5 | B.1.1.298 | 0.00431 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 5 | 5 | B.1.351.2 | 0.001513 |
ORF1ab/nsp12 | 294 | Y294del | TAC | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp12 | 294 | Y294del1 | taC | ta- | 3 | 4 | All | 0.000001 |
ORF1ab/nsp12 | 294 | Y294del1 | Tac | -ac | 1 | 4 | All | 0 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp12 | 294 | Y294del | TAC | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 4 | 4 | B.1.1.442 | 0.074074 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 4 | 4 | B.1.110.3 | 0.002874 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 4 | 4 | B.1.160.16 | 0.003717 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 4 | 4 | B.1.177.4 | 0.000844 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 4 | 4 | B.1.214.2 | 0.002398 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 4 | 4 | B.1.223 | 0.011111 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 4 | 4 | B.1.400 | 0.001716 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 4 | 4 | P.1.17 | 0.000647 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 3 | 3 | A | 0.001161 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 3 | 3 | A.1 | 0.000846 |
ORF1ab/nsp12 | 294 | Y294N | Tac | Aac | 3 | 3 | All | 0.000001 |
ORF1ab/nsp12 | 294 | Y294R | TAC | CGT | 2 | 3 | All | 0 |
ORF1ab/nsp12 | 294 | Y294C | tAc | tGc | 2 | 3 | All | 0 |
ORF1ab/nsp12 | 294 | Y294R | TAc | CGc | 1 | 3 | All | 0 |
ORF1ab/nsp12 | 294 | Y294C | tAC | tGT | 1 | 3 | All | 0 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp12 | 294 | Y294del | TAC | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 3 | 3 | AY.8 | 0.001818 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 3 | 3 | AY.87 | 0.002498 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 3 | 3 | AZ.3 | 0.004559 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 3 | 3 | B.1.1.302 | 0.006224 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 3 | 3 | B.1.1.435 | 0.103448 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 3 | 3 | B.1.1.486 | 0.004732 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 3 | 3 | B.1.1.63 | 0.001157 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 3 | 3 | B.1.177.19 | 0.004292 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 3 | 3 | B.1.177.88 | 0.037037 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 3 | 3 | B.1.371 | 0.003367 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp12 | 294 | Y294W | tAC | tGG | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 294 | Y294X | taC | taG | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 294 | Y294H | Tac | Cac | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 294 | Y294C | tAC | tGT | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 294 | Y294R | TAc | CGc | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 294 | Y294R | TAC | CGT | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 294 | Y294C | tAc | tGc | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 294 | Y294H | TaC | CaT | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 294 | Y294W | tAC | tGG | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 294 | Y294F | tAc | tTc | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 294 | Y294del2 | tAC | t-- | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 294 | Y294D | Tac | Gac | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 294 | Y294S | tAc | tCc | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 294 | Y294S | tAC | tCA | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | B.1.1.159 | 0.009346 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | B.1.1.279 | 0.002242 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | B.1.1.411 | 0.029412 |
ORF1ab/nsp12 | 294 | Y294del1 | taC | ta- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 294 | Y294X | taC | taA | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 294 | Y294S | tAC | tCA | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 294 | Y294S | tAc | tCc | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | B.1.1.8 | 0.007168 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | B.1.139 | 0.001466 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | B.1.147 | 0.001512 |
ORF1ab/nsp12 | 294 | Y294del | TAC | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | B.1.258.14 | 0.001961 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | B.1.302 | 0.026667 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | B.29 | 0.007018 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 294 | Y294del | TAC | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp12 | 294 | Y294Q | TaC | CaG | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 294 | Y294L | TAC | CTG | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 294 | Y294C | tAc | tGc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 294 | Y294del | TAC | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp12 | 294 | Y294del | TAC | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp12 | 294 | Y294del | TAC | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp12 | 294 | Y294F | tAc | tTc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 294 | Y294del2 | tAC | t-- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 294 | Y294H | Tac | Cac | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp12 | 294 | Y294N | Tac | Aac | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp12 | 294 | Y294del | TAC | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp12 | 294 | Y294H | Tac | Cac | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp12 | 294 | Y294H | TaC | CaT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp12 | 294 | Y294H | Tac | Cac | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp12 | 294 | Y294L | TAC | CTG | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp12 | 294 | Y294H | Tac | Cac | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp12 | 294 | Y294del | TAC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 294 | Y294N | Tac | Aac | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 294 | Y294H | Tac | Cac | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.1.184 | 0.058824 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.1.219 | 0.005 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.1.229 | 0.005747 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 294 | Y294del | TAC | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.1.349 | 0.010309 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.1.57 | 0.011494 |
ORF1ab/nsp12 | 294 | Y294N | Tac | Aac | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 294 | Y294del2 | tAC | t-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 294 | Y294Q | TaC | CaG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 294 | Y294H | Tac | Cac | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 294 | Y294R | TAC | CGT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 294 | Y294del | TAC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.134 | 0.005464 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.160.15 | 0.00495 |
ORF1ab/nsp12 | 294 | Y294del1 | Tac | -ac | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp12 | 294 | Y294del | TAC | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp12 | 294 | Y294del | TAC | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.178 | 0.02381 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp12 | 294 | Y294del | TAC | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp12 | 294 | Y294D | Tac | Gac | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp12 | 294 | Y294del1 | taC | ta- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp12 | 294 | Y294del | TAC | --- | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.402 | 0.009804 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.452 | 0.013699 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp12 | 294 | Y294X | taC | taG | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.547 | 0.02439 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp12 | 294 | Y294X | taC | taA | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 294 | Y294H | Tac | Cac | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 294 | Y294del | TAC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 294 | Y294del | TAC | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | B.1.8 | 0.001972 |
ORF1ab/nsp12 | 294 | Y294F | tAc | tTc | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | C.32 | 0.023256 |
ORF1ab/nsp12 | 294 | Y294H | Tac | Cac | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp12 | 294 | Y294D | Tac | Gac | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp12 | 294 | Y294Y | taC | taT | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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