CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 293

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12293T293IT4685InonsynaCaaTa598859870.99983314317-14319
ORF1ab/nsp12293T293IT4685InonsynaCAaTT598810.00016700114317-14319
ORF1ab/nsp12293T293TT4685TsynacAacG3663380.92349714317-14319
ORF1ab/nsp12293T293TT4685TsynacAacT366140.038251414317-14319
ORF1ab/nsp12293T293TT4685TsynacAacC366140.038251414317-14319
ORF1ab/nsp12293T293AT4685AnonsynAcaGca1461450.99315114317-14319
ORF1ab/nsp12293T293AT4685AnonsynAcAGcC14610.0068493214317-14319
ORF1ab/nsp12293T293delT4685deldelACA---6060114317-14319
ORF1ab/nsp12293T293PT4685PnonsynAcaCca42410.9761914317-14319
ORF1ab/nsp12293T293PT4685PnonsynAcACcT4210.023809514317-14319
ORF1ab/nsp12293T293ST4685SnonsynAcaTca23190.82608714317-14319
ORF1ab/nsp12293T293ST4685SnonsynAcATcT2320.086956514317-14319
ORF1ab/nsp12293T293ST4685SnonsynAcATcC2320.086956514317-14319
ORF1ab/nsp12293T293KT4685KnonsynaCaaAa22210.95454514317-14319
ORF1ab/nsp12293T293KT4685KnonsynaCAaAG2210.045454514317-14319
ORF1ab/nsp12293T293MT4685MnonsynaCAaTG66114317-14319
ORF1ab/nsp12293T293LT4685LnonsynACACTG620.33333314317-14319
ORF1ab/nsp12293T293LT4685LnonsynACaCTa620.33333314317-14319
ORF1ab/nsp12293T293LT4685LnonsynACACTT610.16666714317-14319
ORF1ab/nsp12293T293LT4685LnonsynACaTTa610.16666714317-14319
ORF1ab/nsp12293T293del1T4685del1delacAac-33114317-14319
ORF1ab/nsp12293T293RT4685RnonsynaCaaGa22114317-14319
ORF1ab/nsp12293T293VT4685VnonsynACaGTa210.514317-14319
ORF1ab/nsp12293T293VT4685VnonsynACAGTG210.514317-14319
ORF1ab/nsp12293T293del2T4685del2delaCAa--11114317-14319
ORF1ab/nsp12293T293FT4685FnonsynACATTT11114317-14319
ORF1ab/nsp12293T293QT4685QnonsynACaCAa11114317-14319
ORF1ab/nsp12293T293XT4685XnonsynACaTGa11114317-14319

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12293T293IaCaaTa59875988All0.001145
ORF1ab/nsp12293T293IaCAaTT15988All0
ORF1ab/nsp12293T293IaCaaTa10001000AY.30.009946
ORF1ab/nsp12293T293IaCaaTa846846AY.200.03288
ORF1ab/nsp12293T293IaCaaTa757757B.1.1.70.000678
ORF1ab/nsp12293T293IaCaaTa527527AY.40.00082
ORF1ab/nsp12293T293TacAacG338366All0.000065
ORF1ab/nsp12293T293TacAacT14366All0.000003
ORF1ab/nsp12293T293TacAacC14366All0.000003
ORF1ab/nsp12293T293IaCaaTa358358B.1.20.003152
ORF1ab/nsp12293T293IaCaaTa303303B.1.617.20.001141
ORF1ab/nsp12293T293IaCaaTa218218A.23.10.153521
ORF1ab/nsp12293T293IaCaaTa164164AY.250.000986
ORF1ab/nsp12293T293IaCaaTa149149B.1.177.40.031448
ORF1ab/nsp12293T293AAcaGca145146All0.000028
ORF1ab/nsp12293T293AAcAGcC1146All0
ORF1ab/nsp12293T293IaCaaTa9393AY.920.026716
ORF1ab/nsp12293T293IaCaaTa8282AY.1030.000509
ORF1ab/nsp12293T293IaCaaTa8282AY.300.03245
ORF1ab/nsp12293T293TacAacG8282B.1.258.140.080392
ORF1ab/nsp12293T293AAcaGca8182B.1.617.20.000305
ORF1ab/nsp12293T293AAcAGcC182B.1.617.20.000004
ORF1ab/nsp12293T293IaCaaTa7575AY.430.000332
ORF1ab/nsp12293T293IaCaaTa7373AY.440.000444
ORF1ab/nsp12293T293IaCaaTa6868B.1.10.001234
ORF1ab/nsp12293T293IaCaaTa6161B.10.000559
ORF1ab/nsp12293T293delACA---6060All0.000011
ORF1ab/nsp12293T293TacAacG5858P.1.140.002772
ORF1ab/nsp12293T293IaCaaTa5353AY.740.006129
ORF1ab/nsp12293T293IaCaaTa5151B.1.1770.000672
ORF1ab/nsp12293T293TacAacG5151P.20.009518
ORF1ab/nsp12293T293IaCaaTa4646B.1.351.50.027578
ORF1ab/nsp12293T293PAcaCca4142All0.000008
ORF1ab/nsp12293T293PAcACcT142All0
ORF1ab/nsp12293T293IaCaaTa4242B.1.1.3841
ORF1ab/nsp12293T293IaCaaTa4242B.1.5260.000987
ORF1ab/nsp12293T293IaCaaTa3939P.10.000614
ORF1ab/nsp12293T293IaCaaTa3636B.1.1.5190.00143
ORF1ab/nsp12293T293IaCaaTa3333AY.1000.001518
ORF1ab/nsp12293T293IaCaaTa3030B.1.3690.008557
ORF1ab/nsp12293T293delACA---2929B.1.1.70.000026
ORF1ab/nsp12293T293IaCaaTa2828AY.330.00187
ORF1ab/nsp12293T293TacAacG2425AY.40.000037
ORF1ab/nsp12293T293TacAacC125AY.40.000002
ORF1ab/nsp12293T293SAcaTca1923All0.000004
ORF1ab/nsp12293T293SAcATcT223All0
ORF1ab/nsp12293T293SAcATcC223All0
ORF1ab/nsp12293T293KaCaaAa2122All0.000004
ORF1ab/nsp12293T293KaCAaAG122All0
ORF1ab/nsp12293T293IaCaaTa2222AY.1020.000583
ORF1ab/nsp12293T293IaCaaTa2020AY.390.000494
ORF1ab/nsp12293T293IaCaaTa2020B.1.177.320.026991
ORF1ab/nsp12293T293IaCaaTa1919B.1.1.3690.008478
ORF1ab/nsp12293T293PAcaCca1818B.1.1.70.000016
ORF1ab/nsp12293T293TacAacG1718B.1.1.70.000015
ORF1ab/nsp12293T293TacAacC118B.1.1.70.000001
ORF1ab/nsp12293T293IaCaaTa1717B.1.619.10.010904
ORF1ab/nsp12293T293IaCaaTa1616AY.3.10.001364
ORF1ab/nsp12293T293IaCaaTa1616Q.20.009816
ORF1ab/nsp12293T293IaCaaTa1515AD.20.003284
ORF1ab/nsp12293T293IaCaaTa1515AY.340.001454
ORF1ab/nsp12293T293IaCaaTa1414B.1.2340.001847
ORF1ab/nsp12293T293IaCaaTa1414B.1.5870.026565
ORF1ab/nsp12293T293TacAacG1313AY.30.000129
ORF1ab/nsp12293T293IaCaaTa1313B.1.3510.000386
ORF1ab/nsp12293T293IaCaaTa1313B.1.4690.046931
ORF1ab/nsp12293T293TacAacG1213B.1.617.20.000045
ORF1ab/nsp12293T293TacAacC113B.1.617.20.000004
ORF1ab/nsp12293T293SAcaTca1313P.10.000205
ORF1ab/nsp12293T293IaCaaTa1212AY.130.001932
ORF1ab/nsp12293T293TacAacG1112AY.250.000066
ORF1ab/nsp12293T293TacAacT112AY.250.000006
ORF1ab/nsp12293T293IaCaaTa1212B.1.5960.001046
ORF1ab/nsp12293T293KaCaaAa1212B.1.617.20.000045
ORF1ab/nsp12293T293IaCaaTa1111AY.1170.00093
ORF1ab/nsp12293T293IaCaaTa1111AY.1200.000409
ORF1ab/nsp12293T293IaCaaTa1111AY.470.000342
ORF1ab/nsp12293T293IaCaaTa1111B.1.4040.014323
ORF1ab/nsp12293T293AAcaGca1010AY.590.005297
ORF1ab/nsp12293T293IaCaaTa99AY.220.018828
ORF1ab/nsp12293T293AAcaGca99AY.250.000054
ORF1ab/nsp12293T293IaCaaTa99B.1.2580.000599
ORF1ab/nsp12293T293IaCaaTa99B.1.4280.009184
ORF1ab/nsp12293T293IaCaaTa99B.1.5250.001018
ORF1ab/nsp12293T293IaCaaTa88AF.10.296296
ORF1ab/nsp12293T293IaCaaTa88B.1.1.2840.000859
ORF1ab/nsp12293T293AAcaGca88B.1.1.70.000007
ORF1ab/nsp12293T293IaCaaTa88B.1.177.210.000612
ORF1ab/nsp12293T293IaCaaTa88B.1.2210.000568
ORF1ab/nsp12293T293IaCaaTa88B.1.4290.000188
ORF1ab/nsp12293T293IaCaaTa88B.1.438.10.000858
ORF1ab/nsp12293T293IaCaaTa88C.370.000929
ORF1ab/nsp12293T293IaCaaTa88C.380.064516
ORF1ab/nsp12293T293IaCaaTa88N.50.014134
ORF1ab/nsp12293T293IaCaaTa88P.1.140.000382
ORF1ab/nsp12293T293IaCaaTa77AY.1190.000247
ORF1ab/nsp12293T293PAcaCca77AY.440.000043
ORF1ab/nsp12293T293IaCaaTa77AY.46.10.007187
ORF1ab/nsp12293T293IaCaaTa77AY.790.008475
ORF1ab/nsp12293T293IaCaaTa77B.1.1.330.002946
ORF1ab/nsp12293T293IaCaaTa77B.1.258.170.000728
ORF1ab/nsp12293T293MaCAaTG66All0.000001
ORF1ab/nsp12293T293LACaCTa26All0
ORF1ab/nsp12293T293LACACTG26All0
ORF1ab/nsp12293T293LACaTTa16All0
ORF1ab/nsp12293T293LACACTT16All0
ORF1ab/nsp12293T293TacAacG66AY.1190.000212
ORF1ab/nsp12293T293IaCaaTa66AY.460.000624
ORF1ab/nsp12293T293IaCaaTa66AY.50.000124
ORF1ab/nsp12293T293IaCaaTa66AY.510.005455
ORF1ab/nsp12293T293TacAacG36B.10.000027
ORF1ab/nsp12293T293TacAacT36B.10.000027
ORF1ab/nsp12293T293TacAacT46B.1.20.000035
ORF1ab/nsp12293T293TacAacG16B.1.20.000009
ORF1ab/nsp12293T293TacAacC16B.1.20.000009
ORF1ab/nsp12293T293MaCAaTG66B.1.617.20.000023
ORF1ab/nsp12293T293LACACTG250.111111
ORF1ab/nsp12293T293LACaCTa150.055556
ORF1ab/nsp12293T293LACaTTa150.055556
ORF1ab/nsp12293T293LACACTT150.055556
ORF1ab/nsp12293T293TacAacG55AY.1000.00023
ORF1ab/nsp12293T293IaCaaTa55AY.1060.001674
ORF1ab/nsp12293T293delACA---55AY.40.000008
ORF1ab/nsp12293T293IaCaaTa55AY.4.20.000108
ORF1ab/nsp12293T293IaCaaTa55AY.690.000933
ORF1ab/nsp12293T293TacAacG55AY.90.000338
ORF1ab/nsp12293T293IaCaaTa55B.1.1.1570.004566
ORF1ab/nsp12293T293IaCaaTa55B.1.1.1740.016892
ORF1ab/nsp12293T293IaCaaTa55B.1.1.2630.007788
ORF1ab/nsp12293T293AAcaGca55B.1.20.000044
ORF1ab/nsp12293T293IaCaaTa55B.1.6370.000365
ORF1ab/nsp12293T293delACA---440.222222
ORF1ab/nsp12293T293TacAacG24AY.1030.000012
ORF1ab/nsp12293T293TacAacC24AY.1030.000012
ORF1ab/nsp12293T293IaCaaTa44AY.1210.000541
ORF1ab/nsp12293T293IaCaaTa44AY.290.000063
ORF1ab/nsp12293T293AAcaGca44AY.40.000006
ORF1ab/nsp12293T293delACA---44AY.430.000018
ORF1ab/nsp12293T293TacAacG34AY.430.000013
ORF1ab/nsp12293T293TacAacC14AY.430.000004
ORF1ab/nsp12293T293TacAacG34AY.440.000018
ORF1ab/nsp12293T293TacAacC14AY.440.000006
ORF1ab/nsp12293T293IaCaaTa44AY.450.000487
ORF1ab/nsp12293T293IaCaaTa44AY.880.003537
ORF1ab/nsp12293T293IaCaaTa44AY.90.00027
ORF1ab/nsp12293T293IaCaaTa44B.1.1.2220.000816
ORF1ab/nsp12293T293IaCaaTa44B.1.1600.000125
ORF1ab/nsp12293T293IaCaaTa44B.1.177.300.01005
ORF1ab/nsp12293T293IaCaaTa44B.1.177.860.000734
ORF1ab/nsp12293T293TacAacG44B.1.2580.000266
ORF1ab/nsp12293T293TacAacC44B.1.3510.000119
ORF1ab/nsp12293T293IaCaaTa44B.1.4270.000202
ORF1ab/nsp12293T293IaCaaTa44B.1.5610.001588
ORF1ab/nsp12293T293IaCaaTa44D.20.0003
ORF1ab/nsp12293T293del1acAac-33All0.000001
ORF1ab/nsp12293T293IaCaaTa33AY.1180.000188
ORF1ab/nsp12293T293IaCaaTa33AY.260.000085
ORF1ab/nsp12293T293TacAacG33AY.390.000074
ORF1ab/nsp12293T293AAcaGca33AY.390.000074
ORF1ab/nsp12293T293delACA---33AY.4.50.000322
ORF1ab/nsp12293T293IaCaaTa33AY.420.000121
ORF1ab/nsp12293T293IaCaaTa33AY.750.000168
ORF1ab/nsp12293T293IaCaaTa33AY.940.001328
ORF1ab/nsp12293T293TacAacG33AY.950.002283
ORF1ab/nsp12293T293IaCaaTa33AY.98.10.000145
ORF1ab/nsp12293T293IaCaaTa33B.1.1.2160.002671
ORF1ab/nsp12293T293IaCaaTa33B.1.1.2200.005576
ORF1ab/nsp12293T293IaCaaTa33B.1.1.2910.002227
ORF1ab/nsp12293T293SAcaTca23B.1.1.70.000002
ORF1ab/nsp12293T293SAcATcC13B.1.1.70.000001
ORF1ab/nsp12293T293IaCaaTa33B.1.160.90.021583
ORF1ab/nsp12293T293IaCaaTa33B.1.177.100.002634
ORF1ab/nsp12293T293IaCaaTa33B.1.214.20.001799
ORF1ab/nsp12293T293IaCaaTa33B.1.2430.000209
ORF1ab/nsp12293T293TacAacG33B.1.2430.000209
ORF1ab/nsp12293T293IaCaaTa33B.1.258.110.001189
ORF1ab/nsp12293T293IaCaaTa33B.1.36.290.001552
ORF1ab/nsp12293T293TacAacG33B.1.466.20.001174
ORF1ab/nsp12293T293TacAacG33B.1.5640.001278
ORF1ab/nsp12293T293AAcaGca33B.1.6210.000266
ORF1ab/nsp12293T293IaCaaTa33Q.80.000495
ORF1ab/nsp12293T293IaCAaTT120.055556
ORF1ab/nsp12293T293IaCaaTa120.055556
ORF1ab/nsp12293T293SAcATcT120.055556
ORF1ab/nsp12293T293PAcaCca120.055556
ORF1ab/nsp12293T293SAcaTca120.055556
ORF1ab/nsp12293T293PAcACcT120.055556
ORF1ab/nsp12293T293IaCaaTa22A.10.000564
ORF1ab/nsp12293T293RaCaaGa22All0
ORF1ab/nsp12293T293VACaGTa12All0
ORF1ab/nsp12293T293VACAGTG12All0
ORF1ab/nsp12293T293IaCaaTa22AY.10.000791
ORF1ab/nsp12293T293TacAacG22AY.1200.000074
ORF1ab/nsp12293T293IaCaaTa22AY.240.000862
ORF1ab/nsp12293T293PAcaCca22AY.250.000012
ORF1ab/nsp12293T293IaCaaTa22AY.270.000129
ORF1ab/nsp12293T293IaCaaTa22AY.370.000632
ORF1ab/nsp12293T293IaCaaTa22AY.4.50.000215
ORF1ab/nsp12293T293PAcaCca22AY.410.000588
ORF1ab/nsp12293T293KaCaaAa22AY.430.000009
ORF1ab/nsp12293T293IaCaaTa22AY.5.30.000675
ORF1ab/nsp12293T293IaCaaTa22AY.540.000191
ORF1ab/nsp12293T293IaCaaTa22AY.610.00021
ORF1ab/nsp12293T293IaCaaTa22AY.710.00095
ORF1ab/nsp12293T293IaCaaTa22B0.000256
ORF1ab/nsp12293T293IaCaaTa22B.1.1.2140.000111
ORF1ab/nsp12293T293AAcaGca22B.1.1.2300.018349
ORF1ab/nsp12293T293IaCaaTa22B.1.1.280.000622
ORF1ab/nsp12293T293IaCaaTa22B.1.1.3050.007722
ORF1ab/nsp12293T293IaCaaTa22B.1.1.3060.000877
ORF1ab/nsp12293T293IaCaaTa22B.1.1.390.001019
ORF1ab/nsp12293T293IaCaaTa22B.1.1.4090.005666
ORF1ab/nsp12293T293IaCaaTa22B.1.1.4480.004065
ORF1ab/nsp12293T293IaCaaTa22B.1.1.4860.003155
ORF1ab/nsp12293T293IaCaaTa22B.1.1.700.000682
ORF1ab/nsp12293T293TacAacG22B.1.1770.000026
ORF1ab/nsp12293T293AAcaGca22B.1.1770.000026
ORF1ab/nsp12293T293delACA---22B.1.1770.000026
ORF1ab/nsp12293T293IaCaaTa22B.1.177.170.001642
ORF1ab/nsp12293T293IaCaaTa22B.1.177.810.000379
ORF1ab/nsp12293T293IaCaaTa22B.1.220.002635
ORF1ab/nsp12293T293IaCaaTa22B.1.360.000292
ORF1ab/nsp12293T293IaCaaTa22B.1.36.360.001204
ORF1ab/nsp12293T293TacAacG22B.1.4270.000101
ORF1ab/nsp12293T293TacAacG22B.1.6190.001742
ORF1ab/nsp12293T293IaCaaTa22B.1.6210.000177
ORF1ab/nsp12293T293IaCaaTa22N.100.058824
ORF1ab/nsp12293T293KaCaaAa22P.10.000032
ORF1ab/nsp12293T293AAcaGca22P.10.000032
ORF1ab/nsp12293T293IaCaaTa22Q.30.00029
ORF1ab/nsp12293T293TacAacT110.055556
ORF1ab/nsp12293T293FACATTT110.055556
ORF1ab/nsp12293T293delACA---11A0.000387
ORF1ab/nsp12293T293IaCaaTa11A0.000387
ORF1ab/nsp12293T293IaCaaTa11A.2.50.000499
ORF1ab/nsp12293T293IaCaaTa11A.230.010526
ORF1ab/nsp12293T293IaCaaTa11AA.80.022222
ORF1ab/nsp12293T293TacAacG11AD.20.000219
ORF1ab/nsp12293T293QACaCAa11All0
ORF1ab/nsp12293T293del2aCAa--11All0
ORF1ab/nsp12293T293XACaTGa11All0
ORF1ab/nsp12293T293FACATTT11All0
ORF1ab/nsp12293T293PAcaCca11AY.1020.000027
ORF1ab/nsp12293T293TacAacC11AY.1020.000027
ORF1ab/nsp12293T293AAcaGca11AY.1030.000006
ORF1ab/nsp12293T293IaCaaTa11AY.1050.000643
ORF1ab/nsp12293T293PAcaCca11AY.1060.000335
ORF1ab/nsp12293T293IaCaaTa11AY.1080.001103
ORF1ab/nsp12293T293IaCaaTa11AY.1100.000113
ORF1ab/nsp12293T293IaCaaTa11AY.1110.000183
ORF1ab/nsp12293T293IaCaaTa11AY.1130.000142
ORF1ab/nsp12293T293IaCaaTa11AY.1160.000287
ORF1ab/nsp12293T293AAcaGca11AY.1170.000085
ORF1ab/nsp12293T293TacAacG11AY.1180.000063
ORF1ab/nsp12293T293del1acAac-11AY.1190.000035
ORF1ab/nsp12293T293IaCaaTa11AY.120.20.001285
ORF1ab/nsp12293T293IaCaaTa11AY.140.000088
ORF1ab/nsp12293T293IaCaaTa11AY.160.00038
ORF1ab/nsp12293T293IaCaaTa11AY.16.10.00047
ORF1ab/nsp12293T293AAcaGca11AY.16.10.00047
ORF1ab/nsp12293T293delACA---11AY.190.00114
ORF1ab/nsp12293T293IaCaaTa11AY.210.001898
ORF1ab/nsp12293T293IaCaaTa11AY.230.00007
ORF1ab/nsp12293T293TacAacG11AY.260.000028
ORF1ab/nsp12293T293PAcaCca11AY.260.000028
ORF1ab/nsp12293T293PAcaCca11AY.290.000016
ORF1ab/nsp12293T293LACaCTa11AY.30.00001
ORF1ab/nsp12293T293VACaGTa11AY.30.00001
ORF1ab/nsp12293T293delACA---11AY.30.00001
ORF1ab/nsp12293T293delACA---11AY.360.000148
ORF1ab/nsp12293T293KaCaaAa11AY.360.000148
ORF1ab/nsp12293T293AAcaGca11AY.39.10.00004
ORF1ab/nsp12293T293PAcaCca11AY.40.000002
ORF1ab/nsp12293T293IaCaaTa11AY.4.40.000409
ORF1ab/nsp12293T293AAcaGca11AY.400.000964
ORF1ab/nsp12293T293PAcaCca11AY.400.000964
ORF1ab/nsp12293T293TacAacG11AY.420.00004
ORF1ab/nsp12293T293RaCaaGa11AY.420.00004
ORF1ab/nsp12293T293SAcaTca11AY.440.000006
ORF1ab/nsp12293T293AAcaGca11AY.440.000006
ORF1ab/nsp12293T293IaCaaTa11AY.46.20.000635
ORF1ab/nsp12293T293IaCaaTa11AY.46.40.000165
ORF1ab/nsp12293T293IaCaaTa11AY.46.50.000198
ORF1ab/nsp12293T293IaCaaTa11AY.46.60.000072
ORF1ab/nsp12293T293TacAacG11AY.470.000031
ORF1ab/nsp12293T293TacAacG11AY.50.000021
ORF1ab/nsp12293T293AAcaGca11AY.550.000917
ORF1ab/nsp12293T293IaCaaTa11AY.570.000656
ORF1ab/nsp12293T293IaCaaTa11AY.60.000041
ORF1ab/nsp12293T293delACA---11AY.600.000938
ORF1ab/nsp12293T293IaCaaTa11AY.620.000436
ORF1ab/nsp12293T293TacAacC11AY.630.000387
ORF1ab/nsp12293T293IaCaaTa11AY.640.000595
ORF1ab/nsp12293T293AAcaGca11AY.650.000533
ORF1ab/nsp12293T293IaCaaTa11AY.670.000464
ORF1ab/nsp12293T293IaCaaTa11AY.680.000274
ORF1ab/nsp12293T293AAcaGca11AY.680.000274
ORF1ab/nsp12293T293IaCaaTa11AY.70.000196
ORF1ab/nsp12293T293TacAacG11AY.710.000475
ORF1ab/nsp12293T293IaCaaTa11AY.730.000665
ORF1ab/nsp12293T293AAcaGca11AY.750.000056
ORF1ab/nsp12293T293IaCaaTa11AY.75.10.00018
ORF1ab/nsp12293T293TacAacG11AY.80.000606
ORF1ab/nsp12293T293TacAacG11AY.840.000437
ORF1ab/nsp12293T293IaCaaTa11AY.840.000437
ORF1ab/nsp12293T293IaCaaTa11AY.850.000427
ORF1ab/nsp12293T293AAcaGca11AY.90.000068
ORF1ab/nsp12293T293IaCaaTa11AY.9.10.000084
ORF1ab/nsp12293T293AAcaGca11AY.9.20.000037
ORF1ab/nsp12293T293IaCaaTa11AY.960.002075
ORF1ab/nsp12293T293IaCaaTa11AY.980.000079
ORF1ab/nsp12293T293TacAacT11AY.98.10.000048
ORF1ab/nsp12293T293delACA---11AY.990.001049
ORF1ab/nsp12293T293SAcATcC11B0.000128
ORF1ab/nsp12293T293SAcATcT11B.10.000009
ORF1ab/nsp12293T293QACaCAa11B.1.10.000018
ORF1ab/nsp12293T293TacAacG11B.1.10.000018
ORF1ab/nsp12293T293IaCaaTa11B.1.1.1210.002427
ORF1ab/nsp12293T293IaCaaTa11B.1.1.1610.003534
ORF1ab/nsp12293T293AAcaGca11B.1.1.1760.000439
ORF1ab/nsp12293T293IaCaaTa11B.1.1.1980.001468
ORF1ab/nsp12293T293IaCaaTa11B.1.1.2270.004348
ORF1ab/nsp12293T293SAcaTca11B.1.1.2370.005405
ORF1ab/nsp12293T293IaCaaTa11B.1.1.2650.003155
ORF1ab/nsp12293T293delACA---11B.1.1.3110.000358
ORF1ab/nsp12293T293IaCaaTa11B.1.1.3160.000925
ORF1ab/nsp12293T293IaCaaTa11B.1.1.3170.000412
ORF1ab/nsp12293T293IaCaaTa11B.1.1.3180.000302
ORF1ab/nsp12293T293IaCaaTa11B.1.1.370.000193
ORF1ab/nsp12293T293IaCaaTa11B.1.1.4320.001266
ORF1ab/nsp12293T293TacAacG11B.1.1.500.000679
ORF1ab/nsp12293T293VACAGTG11B.1.1.70.000001
ORF1ab/nsp12293T293KaCAaAG11B.1.1.70.000001
ORF1ab/nsp12293T293del1acAac-11B.1.1.70.000001
ORF1ab/nsp12293T293del2aCAa--11B.1.1.70.000001
ORF1ab/nsp12293T293XACaTGa11B.1.1.70.000001
ORF1ab/nsp12293T293delACA---11B.1.1.700.000341
ORF1ab/nsp12293T293IaCaaTa11B.1.1700.00431
ORF1ab/nsp12293T293SAcaTca11B.1.1770.000013
ORF1ab/nsp12293T293TacAacT11B.1.177.180.00116
ORF1ab/nsp12293T293IaCaaTa11B.1.177.200.001517
ORF1ab/nsp12293T293IaCaaTa11B.1.177.230.003236
ORF1ab/nsp12293T293KaCaaAa11B.1.177.430.001477
ORF1ab/nsp12293T293AAcaGca11B.1.177.440.000519
ORF1ab/nsp12293T293IaCaaTa11B.1.177.510.004566
ORF1ab/nsp12293T293IaCaaTa11B.1.177.550.002331
ORF1ab/nsp12293T293IaCaaTa11B.1.177.560.000668
ORF1ab/nsp12293T293IaCaaTa11B.1.177.750.001041
ORF1ab/nsp12293T293IaCaaTa11B.1.177.80.000752
ORF1ab/nsp12293T293IaCaaTa11B.1.177.820.000477
ORF1ab/nsp12293T293IaCaaTa11B.1.177.830.001481
ORF1ab/nsp12293T293TacAacG11B.1.177.860.000183
ORF1ab/nsp12293T293delACA---11B.1.177.870.000728
ORF1ab/nsp12293T293TacAacT11B.1.177.890.02439
ORF1ab/nsp12293T293KaCaaAa11B.1.20.000009
ORF1ab/nsp12293T293IaCaaTa11B.1.2060.000816
ORF1ab/nsp12293T293IaCaaTa11B.1.2390.001221
ORF1ab/nsp12293T293PAcaCca11B.1.2430.00007
ORF1ab/nsp12293T293AAcaGca11B.1.2430.00007
ORF1ab/nsp12293T293delACA---11B.1.258.30.001675
ORF1ab/nsp12293T293IaCaaTa11B.1.258.40.003448
ORF1ab/nsp12293T293IaCaaTa11B.1.2980.002114
ORF1ab/nsp12293T293IaCaaTa11B.1.3110.000275
ORF1ab/nsp12293T293TacAacT11B.1.3360.002439
ORF1ab/nsp12293T293IaCaaTa11B.1.3460.001311
ORF1ab/nsp12293T293AAcaGca11B.1.360.000146
ORF1ab/nsp12293T293IaCaaTa11B.1.36.160.001425
ORF1ab/nsp12293T293IaCaaTa11B.1.36.170.000494
ORF1ab/nsp12293T293IaCaaTa11B.1.36.310.001751
ORF1ab/nsp12293T293IaCaaTa11B.1.36.380.001642
ORF1ab/nsp12293T293IaCaaTa11B.1.3610.001289
ORF1ab/nsp12293T293delACA---11B.1.3670.000792
ORF1ab/nsp12293T293IaCaaTa11B.1.4090.000781
ORF1ab/nsp12293T293IaCaaTa11B.1.4130.004255
ORF1ab/nsp12293T293PAcaCca11B.1.4290.000024
ORF1ab/nsp12293T293IaCaaTa11B.1.4590.004082
ORF1ab/nsp12293T293IaCaaTa11B.1.466.10.007194
ORF1ab/nsp12293T293IaCaaTa11B.1.4680.005714
ORF1ab/nsp12293T293IaCaaTa11B.1.4970.000315
ORF1ab/nsp12293T293TacAacG11B.1.5260.000024
ORF1ab/nsp12293T293IaCaaTa11B.1.5400.009709
ORF1ab/nsp12293T293IaCaaTa11B.1.5640.000426
ORF1ab/nsp12293T293IaCaaTa11B.1.5680.001111
ORF1ab/nsp12293T293PAcaCca11B.1.5880.00091
ORF1ab/nsp12293T293IaCaaTa11B.1.595.10.005848
ORF1ab/nsp12293T293del1acAac-11B.1.5960.000087
ORF1ab/nsp12293T293TacAacG11B.1.6090.000479
ORF1ab/nsp12293T293IaCaaTa11B.1.617.10.000129
ORF1ab/nsp12293T293RaCaaGa11B.1.617.20.000004
ORF1ab/nsp12293T293delACA---11B.1.617.20.000004
ORF1ab/nsp12293T293PAcaCca11B.1.617.20.000004
ORF1ab/nsp12293T293IaCaaTa11B.1.6180.004032
ORF1ab/nsp12293T293delACA---11B.1.6210.000089
ORF1ab/nsp12293T293IaCaaTa11B.1.6280.000352
ORF1ab/nsp12293T293TacAacT11B.1.6370.000073
ORF1ab/nsp12293T293IaCaaTa11B.1.760.011364
ORF1ab/nsp12293T293IaCaaTa11B.1.80.001972
ORF1ab/nsp12293T293IaCaaTa11B.1.910.002075
ORF1ab/nsp12293T293IaCaaTa11B.290.003509
ORF1ab/nsp12293T293KaCaaAa11B.60.00091
ORF1ab/nsp12293T293IaCaaTa11B.60.00091
ORF1ab/nsp12293T293IaCaaTa11C.10.002392
ORF1ab/nsp12293T293PAcaCca11C.160.00106
ORF1ab/nsp12293T293IaCaaTa11C.350.000774
ORF1ab/nsp12293T293TacAacG11P.10.000016
ORF1ab/nsp12293T293KaCaaAa11P.1.150.000232
ORF1ab/nsp12293T293IaCaaTa11P.1.150.000232
ORF1ab/nsp12293T293IaCaaTa11P.1.20.001156
ORF1ab/nsp12293T293IaCaaTa11P.20.000187
ORF1ab/nsp12293T293IaCaaTa11Q.10.000126
ORF1ab/nsp12293T293IaCaaTa11R.10.00009
ORF1ab/nsp12293T293IaCaaTa11Y.10.012821