CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 291

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12291D291DD4683DsyngaTgaC28762876114311-14313
ORF1ab/nsp12291D291delD4683deldelGAT---5353114311-14313
ORF1ab/nsp12291D291YD4683YnonsynGatTat16150.937514311-14313
ORF1ab/nsp12291D291YD4683YnonsynGaTTaC1610.062514311-14313
ORF1ab/nsp12291D291GD4683GnonsyngAtgGt99114311-14313
ORF1ab/nsp12291D291ND4683NnonsynGatAat850.62514311-14313
ORF1ab/nsp12291D291ND4683NnonsynGaTAaC830.37514311-14313
ORF1ab/nsp12291D291del1D4683del1delgaTga-720.28571414311-14313
ORF1ab/nsp12291D291del1D4683del1delGaTAa-720.28571414311-14313
ORF1ab/nsp12291D291del1D4683del1delGat-at720.28571414311-14313
ORF1ab/nsp12291D291del1D4683del1delgAtg-t710.14285714311-14313
ORF1ab/nsp12291D291VD4683VnonsyngAtgTt540.814311-14313
ORF1ab/nsp12291D291VD4683VnonsyngATgTA510.214311-14313
ORF1ab/nsp12291D291HD4683HnonsynGatCat44114311-14313
ORF1ab/nsp12291D291CD4683CnonsynGATTGC430.7514311-14313
ORF1ab/nsp12291D291CD4683CnonsynGAtTGt410.2514311-14313
ORF1ab/nsp12291D291ED4683EnonsyngaTgaA33114311-14313
ORF1ab/nsp12291D291AD4683AnonsyngAtgCt320.66666714311-14313
ORF1ab/nsp12291D291AD4683AnonsyngATgCC310.33333314311-14313
ORF1ab/nsp12291D291SD4683SnonsynGAtAGt22114311-14313
ORF1ab/nsp12291D291LD4683LnonsynGATCTG210.514311-14313
ORF1ab/nsp12291D291LD4683LnonsynGATCTC210.514311-14313
ORF1ab/nsp12291D291TD4683TnonsynGAtACt210.514311-14313
ORF1ab/nsp12291D291TD4683TnonsynGATACC210.514311-14313
ORF1ab/nsp12291D291PD4683PnonsynGAtCCt11114311-14313
ORF1ab/nsp12291D291ID4683InonsynGATATC11114311-14313
ORF1ab/nsp12291D291del2D4683del2delGAt--t11114311-14313

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12291D291DgaTgaC28762876All0.00055
ORF1ab/nsp12291D291DgaTgaC753753B.1.1.4320.953165
ORF1ab/nsp12291D291DgaTgaC414414B.1.1.70.000371
ORF1ab/nsp12291D291DgaTgaC285285B.1.1.2770.216237
ORF1ab/nsp12291D291DgaTgaC184184B.1.617.20.000693
ORF1ab/nsp12291D291DgaTgaC144144AY.980.011375
ORF1ab/nsp12291D291DgaTgaC116116B.10.001063
ORF1ab/nsp12291D291DgaTgaC9999AY.116.10.030832
ORF1ab/nsp12291D291DgaTgaC8080B.1.5341
ORF1ab/nsp12291D291DgaTgaC6565B.1.1.2441
ORF1ab/nsp12291D291delGAT---5353All0.00001
ORF1ab/nsp12291D291DgaTgaC4747B.1.5970.217593
ORF1ab/nsp12291D291DgaTgaC3939AY.40.000061
ORF1ab/nsp12291D291DgaTgaC3939AY.430.000173
ORF1ab/nsp12291D291DgaTgaC3737AY.75.10.006671
ORF1ab/nsp12291D291DgaTgaC3535B.1.4290.000824
ORF1ab/nsp12291D291DgaTgaC3434B.1.10.000617
ORF1ab/nsp12291D291DgaTgaC3333B.1.20.000291
ORF1ab/nsp12291D291DgaTgaC3131AY.1030.000192
ORF1ab/nsp12291D291DgaTgaC2929B.1.1770.000382
ORF1ab/nsp12291D291DgaTgaC2626AY.1020.000689
ORF1ab/nsp12291D291DgaTgaC2525P.20.004666
ORF1ab/nsp12291D291DgaTgaC2424AY.440.000146
ORF1ab/nsp12291D291delGAT---2424B.1.1.70.000021
ORF1ab/nsp12291D291DgaTgaC2323AY.260.000651
ORF1ab/nsp12291D291DgaTgaC2020B.1.1.5150.4
ORF1ab/nsp12291D291DgaTgaC1818AY.340.001745
ORF1ab/nsp12291D291YGatTat1516All0.000003
ORF1ab/nsp12291D291YGaTTaC116All0
ORF1ab/nsp12291D291DgaTgaC1616B.1.4270.000808
ORF1ab/nsp12291D291DgaTgaC1515AY.1160.004302
ORF1ab/nsp12291D291DgaTgaC1313B.1.1.2140.000721
ORF1ab/nsp12291D291DgaTgaC1212AY.30.000119
ORF1ab/nsp12291D291DgaTgaC1212B.1.2580.000799
ORF1ab/nsp12291D291DgaTgaC1111B.1.4000.004719
ORF1ab/nsp12291D291GgAtgGt99All0.000002
ORF1ab/nsp12291D291DgaTgaC99AY.390.000222
ORF1ab/nsp12291D291DgaTgaC99B.1.5250.001018
ORF1ab/nsp12291D291NGatAat58All0.000001
ORF1ab/nsp12291D291NGaTAaC38All0.000001
ORF1ab/nsp12291D291DgaTgaC88AY.250.000048
ORF1ab/nsp12291D291DgaTgaC88AY.290.000126
ORF1ab/nsp12291D291del1Gat-at27All0
ORF1ab/nsp12291D291del1gaTga-27All0
ORF1ab/nsp12291D291del1GaTAa-27All0
ORF1ab/nsp12291D291del1gAtg-t17All0
ORF1ab/nsp12291D291DgaTgaC77B.1.6320.04698
ORF1ab/nsp12291D291DgaTgaC66P.10.000095
ORF1ab/nsp12291D291DgaTgaC55A0.001935
ORF1ab/nsp12291D291VgAtgTt45All0.000001
ORF1ab/nsp12291D291VgATgTA15All0
ORF1ab/nsp12291D291DgaTgaC55AY.1000.00023
ORF1ab/nsp12291D291delGAT---55AY.40.000008
ORF1ab/nsp12291D291DgaTgaC55B.1.1.5190.000199
ORF1ab/nsp12291D291YGatTat45B.1.1.70.000004
ORF1ab/nsp12291D291YGaTTaC15B.1.1.70.000001
ORF1ab/nsp12291D291DgaTgaC55B.1.177.160.003322
ORF1ab/nsp12291D291DgaTgaC55B.1.5260.000118
ORF1ab/nsp12291D291NGaTAaC340.166667
ORF1ab/nsp12291D291NGatAat140.055556
ORF1ab/nsp12291D291HGatCat44All0.000001
ORF1ab/nsp12291D291CGATTGC34All0.000001
ORF1ab/nsp12291D291CGAtTGt14All0
ORF1ab/nsp12291D291DgaTgaC44AY.1210.000541
ORF1ab/nsp12291D291delGAT---44AY.430.000018
ORF1ab/nsp12291D291DgaTgaC44AY.98.10.000194
ORF1ab/nsp12291D291DgaTgaC44Q.80.00066
ORF1ab/nsp12291D291EgaTgaA33All0.000001
ORF1ab/nsp12291D291AgAtgCt23All0
ORF1ab/nsp12291D291AgATgCC13All0
ORF1ab/nsp12291D291DgaTgaC33AY.1050.001929
ORF1ab/nsp12291D291DgaTgaC33AY.1200.000112
ORF1ab/nsp12291D291DgaTgaC33AY.420.000121
ORF1ab/nsp12291D291DgaTgaC33AY.540.000286
ORF1ab/nsp12291D291DgaTgaC33AY.680.000821
ORF1ab/nsp12291D291DgaTgaC33B.1.1.1920.006928
ORF1ab/nsp12291D291DgaTgaC33B.1.1.2200.005576
ORF1ab/nsp12291D291DgaTgaC33B.1.1.330.001263
ORF1ab/nsp12291D291del1gaTga-23B.1.1.70.000002
ORF1ab/nsp12291D291del1Gat-at13B.1.1.70.000001
ORF1ab/nsp12291D291DgaTgaC33B.1.3510.000089
ORF1ab/nsp12291D291YGatTat33D.20.000225
ORF1ab/nsp12291D291del1GaTAa-220.111111
ORF1ab/nsp12291D291CGATTGC220.111111
ORF1ab/nsp12291D291delGAT---220.111111
ORF1ab/nsp12291D291AgAtgCt120.055556
ORF1ab/nsp12291D291AgATgCC120.055556
ORF1ab/nsp12291D291TGAtACt120.055556
ORF1ab/nsp12291D291TGATACC120.055556
ORF1ab/nsp12291D291DgaTgaC22A.270.003311
ORF1ab/nsp12291D291SGAtAGt22All0
ORF1ab/nsp12291D291TGATACC12All0
ORF1ab/nsp12291D291LGATCTG12All0
ORF1ab/nsp12291D291LGATCTC12All0
ORF1ab/nsp12291D291TGAtACt12All0
ORF1ab/nsp12291D291DgaTgaC22AY.1130.000285
ORF1ab/nsp12291D291DgaTgaC22AY.1140.000462
ORF1ab/nsp12291D291DgaTgaC22AY.1180.000125
ORF1ab/nsp12291D291DgaTgaC22AY.1190.000071
ORF1ab/nsp12291D291DgaTgaC22AY.130.000322
ORF1ab/nsp12291D291DgaTgaC22AY.330.000134
ORF1ab/nsp12291D291YGatTat22AY.40.000003
ORF1ab/nsp12291D291delGAT---22AY.4.50.000215
ORF1ab/nsp12291D291GgAtgGt22AY.430.000009
ORF1ab/nsp12291D291DgaTgaC22AY.470.000062
ORF1ab/nsp12291D291NGatAat22B.10.000018
ORF1ab/nsp12291D291DgaTgaC22B.1.1.2220.000408
ORF1ab/nsp12291D291DgaTgaC22B.1.1.3170.000823
ORF1ab/nsp12291D291SGAtAGt22B.1.1.70.000002
ORF1ab/nsp12291D291HGatCat22B.1.1.70.000002
ORF1ab/nsp12291D291DgaTgaC22B.1.258.170.000208
ORF1ab/nsp12291D291DgaTgaC22B.1.5090.001732
ORF1ab/nsp12291D291DgaTgaC22B.1.5750.000607
ORF1ab/nsp12291D291DgaTgaC22B.1.5960.000174
ORF1ab/nsp12291D291LGATCTC12B.1.617.20.000004
ORF1ab/nsp12291D291LGATCTG12B.1.617.20.000004
ORF1ab/nsp12291D291DgaTgaC22B.1.6200.001892
ORF1ab/nsp12291D291DgaTgaC22B.60.00182
ORF1ab/nsp12291D291DgaTgaC22Q.10.000253
ORF1ab/nsp12291D291DgaTgaC110.055556
ORF1ab/nsp12291D291delGAT---11A0.000387
ORF1ab/nsp12291D291GgAtgGt11A.2.5.20.001572
ORF1ab/nsp12291D291del2GAt--t11All0
ORF1ab/nsp12291D291PGAtCCt11All0
ORF1ab/nsp12291D291IGATATC11All0
ORF1ab/nsp12291D291DgaTgaC11AT.10.005128
ORF1ab/nsp12291D291DgaTgaC11AY.1060.000335
ORF1ab/nsp12291D291DgaTgaC11AY.1100.000113
ORF1ab/nsp12291D291DgaTgaC11AY.120.20.001285
ORF1ab/nsp12291D291GgAtgGt11AY.140.000088
ORF1ab/nsp12291D291delGAT---11AY.190.00114
ORF1ab/nsp12291D291YGatTat11AY.200.000039
ORF1ab/nsp12291D291DgaTgaC11AY.200.000039
ORF1ab/nsp12291D291GgAtgGt11AY.30.00001
ORF1ab/nsp12291D291delGAT---11AY.30.00001
ORF1ab/nsp12291D291DgaTgaC11AY.34.10.00051
ORF1ab/nsp12291D291delGAT---11AY.360.000148
ORF1ab/nsp12291D291DgaTgaC11AY.39.10.00004
ORF1ab/nsp12291D291CGAtTGt11AY.39.10.00004
ORF1ab/nsp12291D291GgAtgGt11AY.40.000002
ORF1ab/nsp12291D291DgaTgaC11AY.4.2.10.000149
ORF1ab/nsp12291D291delGAT---11AY.460.000104
ORF1ab/nsp12291D291DgaTgaC11AY.460.000104
ORF1ab/nsp12291D291delGAT---11AY.46.20.000635
ORF1ab/nsp12291D291DgaTgaC11AY.60.000041
ORF1ab/nsp12291D291delGAT---11AY.600.000938
ORF1ab/nsp12291D291delGAT---11AY.670.000464
ORF1ab/nsp12291D291DgaTgaC11AY.670.000464
ORF1ab/nsp12291D291DgaTgaC11AY.7.10.000113
ORF1ab/nsp12291D291DgaTgaC11AY.750.000056
ORF1ab/nsp12291D291DgaTgaC11AY.840.000437
ORF1ab/nsp12291D291del1Gat-at11AY.840.000437
ORF1ab/nsp12291D291GgAtgGt11AY.98.10.000048
ORF1ab/nsp12291D291delGAT---11AY.990.001049
ORF1ab/nsp12291D291YGatTat11AZ.30.00152
ORF1ab/nsp12291D291VgAtgTt11B0.000128
ORF1ab/nsp12291D291DgaTgaC11B0.000128
ORF1ab/nsp12291D291YGatTat11B0.000128
ORF1ab/nsp12291D291EgaTgaA11B.10.000009
ORF1ab/nsp12291D291YGatTat11B.10.000009
ORF1ab/nsp12291D291PGAtCCt11B.1.10.000018
ORF1ab/nsp12291D291DgaTgaC11B.1.1.100.001115
ORF1ab/nsp12291D291DgaTgaC11B.1.1.1980.001468
ORF1ab/nsp12291D291DgaTgaC11B.1.1.250.000569
ORF1ab/nsp12291D291EgaTgaA11B.1.1.250.000569
ORF1ab/nsp12291D291DgaTgaC11B.1.1.280.000311
ORF1ab/nsp12291D291DgaTgaC11B.1.1.2940.001266
ORF1ab/nsp12291D291delGAT---11B.1.1.3110.000358
ORF1ab/nsp12291D291DgaTgaC11B.1.1.3160.000925
ORF1ab/nsp12291D291del1gAtg-t11B.1.1.4110.014706
ORF1ab/nsp12291D291DgaTgaC11B.1.1.4160.000905
ORF1ab/nsp12291D291GgAtgGt11B.1.1.70.000001
ORF1ab/nsp12291D291CGATTGC11B.1.1.70.000001
ORF1ab/nsp12291D291VgATgTA11B.1.1.70.000001
ORF1ab/nsp12291D291EgaTgaA11B.1.1.70.000001
ORF1ab/nsp12291D291NGatAat11B.1.1.70.000001
ORF1ab/nsp12291D291DgaTgaC11B.1.1.700.000341
ORF1ab/nsp12291D291DgaTgaC11B.1.1.890.006061
ORF1ab/nsp12291D291DgaTgaC11B.1.1600.000031
ORF1ab/nsp12291D291AgAtgCt11B.1.1600.000031
ORF1ab/nsp12291D291delGAT---11B.1.1770.000013
ORF1ab/nsp12291D291del2GAt--t11B.1.1770.000013
ORF1ab/nsp12291D291DgaTgaC11B.1.177.210.000076
ORF1ab/nsp12291D291NGatAat11B.1.177.230.003236
ORF1ab/nsp12291D291VgAtgTt11B.1.177.70.000165
ORF1ab/nsp12291D291delGAT---11B.1.177.870.000728
ORF1ab/nsp12291D291HGatCat11B.1.20.000009
ORF1ab/nsp12291D291DgaTgaC11B.1.2390.001221
ORF1ab/nsp12291D291delGAT---11B.1.258.30.001675
ORF1ab/nsp12291D291DgaTgaC11B.1.30.002618
ORF1ab/nsp12291D291YGatTat11B.1.3510.00003
ORF1ab/nsp12291D291DgaTgaC11B.1.3560.001727
ORF1ab/nsp12291D291DgaTgaC11B.1.360.000146
ORF1ab/nsp12291D291DgaTgaC11B.1.36.290.000517
ORF1ab/nsp12291D291DgaTgaC11B.1.36.360.000602
ORF1ab/nsp12291D291DgaTgaC11B.1.3660.004878
ORF1ab/nsp12291D291delGAT---11B.1.3670.000792
ORF1ab/nsp12291D291DgaTgaC11B.1.3670.000792
ORF1ab/nsp12291D291DgaTgaC11B.1.3750.00082
ORF1ab/nsp12291D291DgaTgaC11B.1.4590.004082
ORF1ab/nsp12291D291DgaTgaC11B.1.466.20.000391
ORF1ab/nsp12291D291DgaTgaC11B.1.4990.00105
ORF1ab/nsp12291D291DgaTgaC11B.1.5760.000907
ORF1ab/nsp12291D291DgaTgaC11B.1.5950.000261
ORF1ab/nsp12291D291DgaTgaC11B.1.6090.000479
ORF1ab/nsp12291D291YGatTat11B.1.617.10.000129
ORF1ab/nsp12291D291delGAT---11B.1.617.20.000004
ORF1ab/nsp12291D291VgAtgTt11B.1.617.20.000004
ORF1ab/nsp12291D291IGATATC11B.1.617.20.000004
ORF1ab/nsp12291D291delGAT---11B.1.6210.000089
ORF1ab/nsp12291D291DgaTgaC11B.1.6280.000352
ORF1ab/nsp12291D291DgaTgaC11B.1.780.008547
ORF1ab/nsp12291D291DgaTgaC11B.450.003831
ORF1ab/nsp12291D291GgAtgGt11B.600.015873
ORF1ab/nsp12291D291DgaTgaC11C.370.000116
ORF1ab/nsp12291D291HGatCat11D.20.000075
ORF1ab/nsp12291D291DgaTgaC11N.90.005952
ORF1ab/nsp12291D291VgAtgTt11P.1.120.000484
ORF1ab/nsp12291D291DgaTgaC11P.1.140.000048
ORF1ab/nsp12291D291DgaTgaC11P.1.150.000232
ORF1ab/nsp12291D291DgaTgaC11P.1.70.000319
ORF1ab/nsp12291D291DgaTgaC11Q.30.000145
ORF1ab/nsp12291D291DgaTgaC11W.40.001351