CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 285

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12285R285HR4677HnonsyncGtcAt126712660.99921114293-14295
ORF1ab/nsp12285R285HR4677HnonsyncGTcAC126710.00078926614293-14295
ORF1ab/nsp12285R285CR4677CnonsynCgtTgt3923910.99744914293-14295
ORF1ab/nsp12285R285CR4677CnonsynCgTTgC39210.0025510214293-14295
ORF1ab/nsp12285R285RR4677RsyncgTcgC3843550.92447914293-14295
ORF1ab/nsp12285R285RR4677RsyncgTcgG384250.065104214293-14295
ORF1ab/nsp12285R285RR4677RsyncgTcgA38440.010416714293-14295
ORF1ab/nsp12285R285LR4677LnonsyncGtcTt104890.85576914293-14295
ORF1ab/nsp12285R285LR4677LnonsyncGTcTG104140.13461514293-14295
ORF1ab/nsp12285R285LR4677LnonsynCGTTTA10410.0096153814293-14295
ORF1ab/nsp12285R285SR4677SnonsynCgtAgt2525114293-14295
ORF1ab/nsp12285R285delR4677deldelCGT---1313114293-14295
ORF1ab/nsp12285R285WR4677WnonsynCgTTgG22114293-14295
ORF1ab/nsp12285R285YR4677YnonsynCGtTAt210.514293-14295
ORF1ab/nsp12285R285YR4677YnonsynCGTTAC210.514293-14295
ORF1ab/nsp12285R285FR4677FnonsynCGtTTt11114293-14295

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12285R285HcGtcAt12661267All0.000242
ORF1ab/nsp12285R285HcGTcAC11267All0
ORF1ab/nsp12285R285HcGtcAt680680AY.260.019251
ORF1ab/nsp12285R285CCgtTgt391392All0.000075
ORF1ab/nsp12285R285CCgTTgC1392All0
ORF1ab/nsp12285R285RcgTcgC355384All0.000068
ORF1ab/nsp12285R285RcgTcgG25384All0.000005
ORF1ab/nsp12285R285RcgTcgA4384All0.000001
ORF1ab/nsp12285R285RcgTcgC163165B.1.1.70.000146
ORF1ab/nsp12285R285RcgTcgA2165B.1.1.70.000002
ORF1ab/nsp12285R285LcGtcTt89104All0.000017
ORF1ab/nsp12285R285LcGTcTG14104All0.000003
ORF1ab/nsp12285R285LCGTTTA1104All0
ORF1ab/nsp12285R285HcGtcAt9595AZ.10.082394
ORF1ab/nsp12285R285HcGtcAt9494B.1.1.70.000084
ORF1ab/nsp12285R285HcGtcAt8181AY.250.000487
ORF1ab/nsp12285R285HcGtcAt7575B.10.000687
ORF1ab/nsp12285R285CCgtTgt7171B.1.1.70.000064
ORF1ab/nsp12285R285HcGtcAt6262AY.40.000096
ORF1ab/nsp12285R285CCgtTgt5050B.1.1.5190.001986
ORF1ab/nsp12285R285RcgTcgC3838B.1.619.10.024375
ORF1ab/nsp12285R285CCgtTgt3737AY.40.000058
ORF1ab/nsp12285R285LcGtcTt3636B.1.1.70.000032
ORF1ab/nsp12285R285RcgTcgC3434B.1.6390.73913
ORF1ab/nsp12285R285SCgtAgt2525All0.000005
ORF1ab/nsp12285R285CCgtTgt2525B.1.4290.000588
ORF1ab/nsp12285R285CCgtTgt2222B.1.617.20.000083
ORF1ab/nsp12285R285CCgtTgt2020B.1.20.000176
ORF1ab/nsp12285R285CCgtTgt2020P.10.000315
ORF1ab/nsp12285R285RcgTcgC1818B.1.3110.004942
ORF1ab/nsp12285R285LcGtcTt1616B.1.20.000141
ORF1ab/nsp12285R285HcGtcAt1616B.1.617.20.00006
ORF1ab/nsp12285R285HcGtcAt1515AY.430.000066
ORF1ab/nsp12285R285HcGtcAt1414AY.1030.000087
ORF1ab/nsp12285R285HcGtcAt1414B.1.20.000123
ORF1ab/nsp12285R285delCGT---1313All0.000002
ORF1ab/nsp12285R285RcgTcgG1212AY.50.000248
ORF1ab/nsp12285R285RcgTcgC1111B.1.2430.000765
ORF1ab/nsp12285R285RcgTcgC1010B.1.1770.000132
ORF1ab/nsp12285R285HcGtcAt1010B.1.177.80.007524
ORF1ab/nsp12285R285CCgtTgt1010B.1.6370.000731
ORF1ab/nsp12285R285RcgTcgC1010B.441
ORF1ab/nsp12285R285HcGtcAt99AY.30.00009
ORF1ab/nsp12285R285RcgTcgC89B.1.617.20.00003
ORF1ab/nsp12285R285RcgTcgG19B.1.617.20.000004
ORF1ab/nsp12285R285RcgTcgC58AY.1030.000031
ORF1ab/nsp12285R285RcgTcgG38AY.1030.000019
ORF1ab/nsp12285R285CCgtTgt88AY.440.000049
ORF1ab/nsp12285R285HcGtcAt88B.1.258.170.000832
ORF1ab/nsp12285R285CCgtTgt77AY.250.000042
ORF1ab/nsp12285R285RcgTcgC77AY.40.000011
ORF1ab/nsp12285R285LcGtcTt47B.1.617.20.000015
ORF1ab/nsp12285R285LcGTcTG37B.1.617.20.000011
ORF1ab/nsp12285R285HcGtcAt66A0.002322
ORF1ab/nsp12285R285RcgTcgC66AL.10.077922
ORF1ab/nsp12285R285RcgTcgC66AY.1160.001721
ORF1ab/nsp12285R285CCgtTgt66AY.1180.000376
ORF1ab/nsp12285R285RcgTcgC56AY.430.000022
ORF1ab/nsp12285R285RcgTcgG16AY.430.000004
ORF1ab/nsp12285R285CCgtTgt66B.1.1.1700.007481
ORF1ab/nsp12285R285delCGT---66B.1.1.70.000005
ORF1ab/nsp12285R285CCgtTgt55AY.200.000194
ORF1ab/nsp12285R285SCgtAgt55AY.250.00003
ORF1ab/nsp12285R285LcGtcTt55AY.40.000008
ORF1ab/nsp12285R285LcGTcTG35AY.430.000013
ORF1ab/nsp12285R285LcGtcTt25AY.430.000009
ORF1ab/nsp12285R285HcGtcAt55AY.50.000103
ORF1ab/nsp12285R285HcGtcAt55B.1.177.600.001092
ORF1ab/nsp12285R285CCgtTgt55B.1.177.820.002387
ORF1ab/nsp12285R285CCgtTgt55B.1.2650.006353
ORF1ab/nsp12285R285CCgtTgt55B.1.5260.000118
ORF1ab/nsp12285R285RcgTcgG34AY.200.000117
ORF1ab/nsp12285R285RcgTcgC14AY.200.000039
ORF1ab/nsp12285R285RcgTcgC44AY.250.000024
ORF1ab/nsp12285R285SCgtAgt44AY.260.000113
ORF1ab/nsp12285R285HcGtcAt44AY.390.000099
ORF1ab/nsp12285R285CCgtTgt44AY.430.000018
ORF1ab/nsp12285R285CCgtTgt44B.10.000037
ORF1ab/nsp12285R285RcgTcgC34B.10.000027
ORF1ab/nsp12285R285LcGtcTt34B.10.000027
ORF1ab/nsp12285R285LcGTcTG14B.10.000009
ORF1ab/nsp12285R285RcgTcgG14B.10.000009
ORF1ab/nsp12285R285HcGtcAt44B.1.1.5190.000159
ORF1ab/nsp12285R285LcGtcTt44B.1.5960.000349
ORF1ab/nsp12285R285CCgtTgt33AY.1030.000019
ORF1ab/nsp12285R285CCgtTgt33AY.290.000047
ORF1ab/nsp12285R285HcGtcAt33AY.360.000445
ORF1ab/nsp12285R285delCGT---33AY.40.000005
ORF1ab/nsp12285R285CCgtTgt33AY.470.000093
ORF1ab/nsp12285R285CCgtTgt33AY.730.001996
ORF1ab/nsp12285R285CCgtTgt33AY.750.000168
ORF1ab/nsp12285R285CCgtTgt33B.1.10.000054
ORF1ab/nsp12285R285HcGtcAt33B.1.1600.000094
ORF1ab/nsp12285R285HcGtcAt33B.1.2430.000209
ORF1ab/nsp12285R285HcGtcAt33B.1.6090.001438
ORF1ab/nsp12285R285RcgTcgC23D.20.00015
ORF1ab/nsp12285R285RcgTcgG13D.20.000075
ORF1ab/nsp12285R285HcGtcAt33P.10.000047
ORF1ab/nsp12285R285CCgtTgt120.055556
ORF1ab/nsp12285R285YCGTTAC120.055556
ORF1ab/nsp12285R285YCGtTAt120.055556
ORF1ab/nsp12285R285CCgTTgC120.055556
ORF1ab/nsp12285R285HcGTcAC120.055556
ORF1ab/nsp12285R285HcGtcAt120.055556
ORF1ab/nsp12285R285CCgtTgt22A.280.005291
ORF1ab/nsp12285R285WCgTTgG22All0
ORF1ab/nsp12285R285YCGTTAC12All0
ORF1ab/nsp12285R285YCGtTAt12All0
ORF1ab/nsp12285R285CCgtTgt22AY.1000.000092
ORF1ab/nsp12285R285HcGtcAt22AY.1020.000053
ORF1ab/nsp12285R285LcGtcTt22AY.1030.000012
ORF1ab/nsp12285R285LcGtcTt12AY.1130.000142
ORF1ab/nsp12285R285LcGTcTG12AY.1130.000142
ORF1ab/nsp12285R285RcgTcgC22AY.120.10.000642
ORF1ab/nsp12285R285HcGtcAt22AY.200.000078
ORF1ab/nsp12285R285LcGtcTt22AY.200.000078
ORF1ab/nsp12285R285CCgtTgt22AY.30.00002
ORF1ab/nsp12285R285HcGtcAt22AY.330.000134
ORF1ab/nsp12285R285SCgtAgt22AY.390.000049
ORF1ab/nsp12285R285RcgTcgC22AY.390.000049
ORF1ab/nsp12285R285CCgtTgt22AY.390.000049
ORF1ab/nsp12285R285SCgtAgt22AY.40.000003
ORF1ab/nsp12285R285RcgTcgC22AY.4.20.000043
ORF1ab/nsp12285R285HcGtcAt22AY.4.20.000043
ORF1ab/nsp12285R285CCgtTgt22AY.460.000208
ORF1ab/nsp12285R285HcGtcAt22AY.670.000929
ORF1ab/nsp12285R285HcGtcAt22AY.750.000112
ORF1ab/nsp12285R285LcGTcTG12AY.9.20.000037
ORF1ab/nsp12285R285LcGtcTt12AY.9.20.000037
ORF1ab/nsp12285R285HcGtcAt22B.1.1.1330.016949
ORF1ab/nsp12285R285CCgtTgt22B.1.1.2530.005013
ORF1ab/nsp12285R285CCgtTgt22B.1.1600.000062
ORF1ab/nsp12285R285CCgtTgt22B.1.1770.000026
ORF1ab/nsp12285R285SCgtAgt22B.1.20.000018
ORF1ab/nsp12285R285RcgTcgC22B.1.2580.000133
ORF1ab/nsp12285R285HcGtcAt22B.1.5930.021739
ORF1ab/nsp12285R285HcGtcAt22P.1.110.020408
ORF1ab/nsp12285R285HcGtcAt22P.1.150.000465
ORF1ab/nsp12285R285HcGtcAt22R.10.00018
ORF1ab/nsp12285R285RcgTcgC110.055556
ORF1ab/nsp12285R285CCgtTgt11A0.000387
ORF1ab/nsp12285R285HcGtcAt11A.2.30.004739
ORF1ab/nsp12285R285CCgtTgt11A.2.40.003367
ORF1ab/nsp12285R285HcGtcAt11A.23.10.000704
ORF1ab/nsp12285R285FCGtTTt11All0
ORF1ab/nsp12285R285CCgtTgt11AY.100.00053
ORF1ab/nsp12285R285SCgtAgt11AY.1030.000006
ORF1ab/nsp12285R285HcGtcAt11AY.1040.001984
ORF1ab/nsp12285R285CCgtTgt11AY.1060.000335
ORF1ab/nsp12285R285CCgtTgt11AY.1070.000466
ORF1ab/nsp12285R285HcGtcAt11AY.110.001339
ORF1ab/nsp12285R285CCgtTgt11AY.110.001339
ORF1ab/nsp12285R285CCgtTgt11AY.1110.000183
ORF1ab/nsp12285R285RcgTcgG11AY.1130.000142
ORF1ab/nsp12285R285HcGtcAt11AY.1130.000142
ORF1ab/nsp12285R285RcgTcgA11AY.1190.000035
ORF1ab/nsp12285R285CCgtTgt11AY.1190.000035
ORF1ab/nsp12285R285HcGtcAt11AY.1190.000035
ORF1ab/nsp12285R285SCgtAgt11AY.1200.000037
ORF1ab/nsp12285R285CCgtTgt11AY.120.10.000321
ORF1ab/nsp12285R285CCgtTgt11AY.140.000088
ORF1ab/nsp12285R285HcGtcAt11AY.230.00007
ORF1ab/nsp12285R285CCgtTgt11AY.230.00007
ORF1ab/nsp12285R285RcgTcgC11AY.230.00007
ORF1ab/nsp12285R285SCgtAgt11AY.230.00007
ORF1ab/nsp12285R285CCgtTgt11AY.23.10.000417
ORF1ab/nsp12285R285CCgtTgt11AY.260.000028
ORF1ab/nsp12285R285SCgtAgt11AY.290.000016
ORF1ab/nsp12285R285LcGtcTt11AY.290.000016
ORF1ab/nsp12285R285LcGTcTG11AY.30.00001
ORF1ab/nsp12285R285HcGtcAt11AY.300.000396
ORF1ab/nsp12285R285CCgtTgt11AY.300.000396
ORF1ab/nsp12285R285CCgtTgt11AY.320.000532
ORF1ab/nsp12285R285LcGtcTt11AY.330.000067
ORF1ab/nsp12285R285HcGtcAt11AY.380.000499
ORF1ab/nsp12285R285HcGtcAt11AY.39.10.00004
ORF1ab/nsp12285R285HcGtcAt11AY.4.50.000107
ORF1ab/nsp12285R285delCGT---11AY.4.50.000107
ORF1ab/nsp12285R285CCgtTgt11AY.420.00004
ORF1ab/nsp12285R285LCGTTTA11AY.440.000006
ORF1ab/nsp12285R285CCgtTgt11AY.450.000122
ORF1ab/nsp12285R285delCGT---11AY.46.20.000635
ORF1ab/nsp12285R285CCgtTgt11AY.46.40.000165
ORF1ab/nsp12285R285HcGtcAt11AY.46.50.000198
ORF1ab/nsp12285R285LcGtcTt11AY.46.60.000072
ORF1ab/nsp12285R285HcGtcAt11AY.46.60.000072
ORF1ab/nsp12285R285RcgTcgC11AY.470.000031
ORF1ab/nsp12285R285CCgtTgt11AY.50.000021
ORF1ab/nsp12285R285LcGTcTG11AY.670.000464
ORF1ab/nsp12285R285HcGtcAt11AY.710.000475
ORF1ab/nsp12285R285LcGtcTt11AY.710.000475
ORF1ab/nsp12285R285CCgtTgt11AY.740.000116
ORF1ab/nsp12285R285HcGtcAt11AY.75.10.00018
ORF1ab/nsp12285R285LcGTcTG11AY.840.000437
ORF1ab/nsp12285R285RcgTcgC11AY.90.000068
ORF1ab/nsp12285R285CCgtTgt11AY.9.20.000037
ORF1ab/nsp12285R285RcgTcgG11AY.9.20.000037
ORF1ab/nsp12285R285CCgtTgt11AY.950.000761
ORF1ab/nsp12285R285CCgtTgt11AY.980.000079
ORF1ab/nsp12285R285HcGtcAt11AY.980.000079
ORF1ab/nsp12285R285HcGtcAt11AY.98.10.000048
ORF1ab/nsp12285R285LcGTcTG11AY.990.001049
ORF1ab/nsp12285R285HcGtcAt11AY.99.20.000092
ORF1ab/nsp12285R285CCgtTgt11AY.99.20.000092
ORF1ab/nsp12285R285SCgtAgt11B.10.000009
ORF1ab/nsp12285R285FCGtTTt11B.10.000009
ORF1ab/nsp12285R285HcGtcAt11B.1.10.000018
ORF1ab/nsp12285R285LcGTcTG11B.1.10.000018
ORF1ab/nsp12285R285SCgtAgt11B.1.10.000018
ORF1ab/nsp12285R285HcGtcAt11B.1.1.10.000327
ORF1ab/nsp12285R285HcGtcAt11B.1.1.2430.004082
ORF1ab/nsp12285R285RcgTcgC11B.1.1.2610.008621
ORF1ab/nsp12285R285CCgtTgt11B.1.1.280.000311
ORF1ab/nsp12285R285RcgTcgC11B.1.1.3040.002809
ORF1ab/nsp12285R285CCgtTgt11B.1.1.3110.000358
ORF1ab/nsp12285R285RcgTcgC11B.1.1.3120.001912
ORF1ab/nsp12285R285CCgtTgt11B.1.1.3980.003226
ORF1ab/nsp12285R285LcGtcTt11B.1.1.4020.011111
ORF1ab/nsp12285R285RcgTcgC11B.1.1.4090.002833
ORF1ab/nsp12285R285RcgTcgC11B.1.1.500.000679
ORF1ab/nsp12285R285LcGtcTt11B.1.1.5190.00004
ORF1ab/nsp12285R285SCgtAgt11B.1.1.70.000001
ORF1ab/nsp12285R285HcGtcAt11B.1.1430.021277
ORF1ab/nsp12285R285RcgTcgC11B.1.1600.000031
ORF1ab/nsp12285R285HcGtcAt11B.1.1770.000013
ORF1ab/nsp12285R285CCgtTgt11B.1.177.210.000076
ORF1ab/nsp12285R285CCgtTgt11B.1.177.730.000566
ORF1ab/nsp12285R285RcgTcgC11B.1.20.000009
ORF1ab/nsp12285R285RcgTcgC11B.1.2100.002132
ORF1ab/nsp12285R285CCgtTgt11B.1.2390.001221
ORF1ab/nsp12285R285CCgtTgt11B.1.258.170.000104
ORF1ab/nsp12285R285RcgTcgC11B.1.2600.003344
ORF1ab/nsp12285R285LcGtcTt11B.1.3110.000275
ORF1ab/nsp12285R285SCgtAgt11B.1.3510.00003
ORF1ab/nsp12285R285RcgTcgC11B.1.3510.00003
ORF1ab/nsp12285R285CCgtTgt11B.1.360.000146
ORF1ab/nsp12285R285HcGtcAt11B.1.36.380.001642
ORF1ab/nsp12285R285RcgTcgA11B.1.36.80.001
ORF1ab/nsp12285R285delCGT---11B.1.3670.000792
ORF1ab/nsp12285R285CCgtTgt11B.1.3910.001127
ORF1ab/nsp12285R285HcGtcAt11B.1.3990.001934
ORF1ab/nsp12285R285HcGtcAt11B.1.4030.003268
ORF1ab/nsp12285R285CCgtTgt11B.1.4040.001302
ORF1ab/nsp12285R285CCgtTgt11B.1.416.10.001563
ORF1ab/nsp12285R285CCgtTgt11B.1.4270.00005
ORF1ab/nsp12285R285SCgtAgt11B.1.4290.000024
ORF1ab/nsp12285R285HcGtcAt11B.1.4290.000024
ORF1ab/nsp12285R285CCgtTgt11B.1.466.20.000391
ORF1ab/nsp12285R285HcGtcAt11B.1.466.20.000391
ORF1ab/nsp12285R285CCgtTgt11B.1.4970.000315
ORF1ab/nsp12285R285LcGtcTt11B.1.5250.000113
ORF1ab/nsp12285R285LcGtcTt11B.1.5260.000024
ORF1ab/nsp12285R285CCgtTgt11B.1.5510.00129
ORF1ab/nsp12285R285LcGtcTt11B.1.5770.000687
ORF1ab/nsp12285R285CCgtTgt11B.1.5950.000261
ORF1ab/nsp12285R285HcGtcAt11B.1.5950.000261
ORF1ab/nsp12285R285HcGtcAt11B.1.5960.000087
ORF1ab/nsp12285R285WCgTTgG11B.1.617.10.000129
ORF1ab/nsp12285R285delCGT---11B.1.6210.000089
ORF1ab/nsp12285R285HcGtcAt11B.1.6210.000089
ORF1ab/nsp12285R285RcgTcgC11B.1.930.000934
ORF1ab/nsp12285R285CCgtTgt11B.400.000364
ORF1ab/nsp12285R285CCgtTgt11C.370.000116
ORF1ab/nsp12285R285LcGtcTt11C.40.01
ORF1ab/nsp12285R285CCgtTgt11D.20.000075
ORF1ab/nsp12285R285LcGtcTt11D.20.000075
ORF1ab/nsp12285R285WCgTTgG11D.20.000075
ORF1ab/nsp12285R285LcGtcTt11N.40.004255
ORF1ab/nsp12285R285RcgTcgG11P.10.000016
ORF1ab/nsp12285R285CCgtTgt11P.1.150.000232
ORF1ab/nsp12285R285SCgtAgt11P.1.17.10.000875
ORF1ab/nsp12285R285RcgTcgC11P.1.70.000319
ORF1ab/nsp12285R285CCgtTgt11Q.10.000126
ORF1ab/nsp12285R285CCgtTgt11Q.30.000145