CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 273

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12273Y273YY4665YsyntaTtaC12801280114257-14259
ORF1ab/nsp12273Y273CY4665CnonsyntAttGt4394380.99772214257-14259
ORF1ab/nsp12273Y273CY4665CnonsyntATtGC43910.002277914257-14259
ORF1ab/nsp12273Y273HY4665HnonsynTatCat3193180.99686514257-14259
ORF1ab/nsp12273Y273HY4665HnonsynTaTCaC31910.003134814257-14259
ORF1ab/nsp12273Y273NY4665NnonsynTatAat2424114257-14259
ORF1ab/nsp12273Y273delY4665deldelTAT---55114257-14259
ORF1ab/nsp12273Y273FY4665FnonsyntAttTt22114257-14259
ORF1ab/nsp12273Y273del1Y4665del1deltaTta-22114257-14259
ORF1ab/nsp12273Y273RY4665RnonsynTAtCGt210.514257-14259
ORF1ab/nsp12273Y273XY4665XnonsyntaTtaA210.514257-14259
ORF1ab/nsp12273Y273XY4665XnonsyntaTtaG210.514257-14259
ORF1ab/nsp12273Y273RY4665RnonsynTATCGC210.514257-14259
ORF1ab/nsp12273Y273SY4665SnonsyntAttCt11114257-14259
ORF1ab/nsp12273Y273del2Y4665del2deltATt--11114257-14259

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12273Y273YtaTtaC12801280All0.000245
ORF1ab/nsp12273Y273YtaTtaC750750AY.250.004511
ORF1ab/nsp12273Y273CtAttGt438439All0.000084
ORF1ab/nsp12273Y273CtATtGC1439All0
ORF1ab/nsp12273Y273HTatCat318319All0.000061
ORF1ab/nsp12273Y273HTaTCaC1319All0
ORF1ab/nsp12273Y273YtaTtaC187187AV.10.944444
ORF1ab/nsp12273Y273CtAttGt172172AY.390.00425
ORF1ab/nsp12273Y273HTatCat118118B.1.1.70.000106
ORF1ab/nsp12273Y273HTatCat114114AY.40.000177
ORF1ab/nsp12273Y273CtAttGt8888AY.3.10.007503
ORF1ab/nsp12273Y273YtaTtaC6767AY.440.000408
ORF1ab/nsp12273Y273CtAttGt6161B.1.1.5180.386076
ORF1ab/nsp12273Y273YtaTtaC5858B.1.617.20.000218
ORF1ab/nsp12273Y273YtaTtaC4545B.1.1.70.00004
ORF1ab/nsp12273Y273YtaTtaC2727AY.390.000667
ORF1ab/nsp12273Y273NTatAat2424All0.000005
ORF1ab/nsp12273Y273YtaTtaC2222AY.40.000034
ORF1ab/nsp12273Y273YtaTtaC1515AY.200.000583
ORF1ab/nsp12273Y273HTatCat1414AY.250.000084
ORF1ab/nsp12273Y273CtAttGt1414AY.40.000022
ORF1ab/nsp12273Y273CtAttGt1414B.1.617.20.000053
ORF1ab/nsp12273Y273YtaTtaC1111AY.30.000109
ORF1ab/nsp12273Y273CtAttGt1111AY.440.000067
ORF1ab/nsp12273Y273YtaTtaC1111B.1.20.000097
ORF1ab/nsp12273Y273CtAttGt88AY.250.000048
ORF1ab/nsp12273Y273YtaTtaC88B.1.1600.00025
ORF1ab/nsp12273Y273HTatCat88B.1.617.20.00003
ORF1ab/nsp12273Y273CtAttGt77AY.1030.000043
ORF1ab/nsp12273Y273CtAttGt77AY.430.000031
ORF1ab/nsp12273Y273CtAttGt66AY.350.001398
ORF1ab/nsp12273Y273CtAttGt66B.1.1.70.000005
ORF1ab/nsp12273Y273delTAT---55All0.000001
ORF1ab/nsp12273Y273YtaTtaC55AY.290.000079
ORF1ab/nsp12273Y273YtaTtaC55AY.4.20.000108
ORF1ab/nsp12273Y273CtAttGt55AY.980.000395
ORF1ab/nsp12273Y273HTatCat55C.370.00058
ORF1ab/nsp12273Y273HTatCat55P.1.70.001596
ORF1ab/nsp12273Y273HTatCat44AY.46.60.000289
ORF1ab/nsp12273Y273HTatCat44B.1.160.260.009685
ORF1ab/nsp12273Y273YtaTtaC44B.1.6210.000354
ORF1ab/nsp12273Y273HTatCat44P.10.000063
ORF1ab/nsp12273Y273HTatCat33AY.1030.000019
ORF1ab/nsp12273Y273CtAttGt33AY.4.40.001227
ORF1ab/nsp12273Y273HTatCat33AY.440.000018
ORF1ab/nsp12273Y273YtaTtaC33AY.46.60.000217
ORF1ab/nsp12273Y273CtAttGt33B.10.000027
ORF1ab/nsp12273Y273YtaTtaC33B.10.000027
ORF1ab/nsp12273Y273NTatAat33B.1.1.70.000003
ORF1ab/nsp12273Y273delTAT---33B.1.1.70.000003
ORF1ab/nsp12273Y273HTatCat33B.1.20.000026
ORF1ab/nsp12273Y273CtAttGt33B.1.2580.0002
ORF1ab/nsp12273Y273HTatCat33B.1.4290.000071
ORF1ab/nsp12273Y273YtaTtaC33B.1.5260.000071
ORF1ab/nsp12273Y273HTaTCaC120.055556
ORF1ab/nsp12273Y273RTATCGC120.055556
ORF1ab/nsp12273Y273RTAtCGt120.055556
ORF1ab/nsp12273Y273CtATtGC120.055556
ORF1ab/nsp12273Y273CtAttGt120.055556
ORF1ab/nsp12273Y273HTatCat120.055556
ORF1ab/nsp12273Y273YtaTtaC22A.10.000564
ORF1ab/nsp12273Y273YtaTtaC22A.2.50.000998
ORF1ab/nsp12273Y273del1taTta-22All0
ORF1ab/nsp12273Y273FtAttTt22All0
ORF1ab/nsp12273Y273RTAtCGt12All0
ORF1ab/nsp12273Y273XtaTtaG12All0
ORF1ab/nsp12273Y273RTATCGC12All0
ORF1ab/nsp12273Y273XtaTtaA12All0
ORF1ab/nsp12273Y273YtaTtaC22AY.1010.000981
ORF1ab/nsp12273Y273YtaTtaC22AY.1020.000053
ORF1ab/nsp12273Y273YtaTtaC22AY.1030.000012
ORF1ab/nsp12273Y273YtaTtaC22AY.1170.000169
ORF1ab/nsp12273Y273NTatAat22AY.250.000012
ORF1ab/nsp12273Y273HTatCat22AY.290.000032
ORF1ab/nsp12273Y273CtAttGt22AY.290.000032
ORF1ab/nsp12273Y273HTatCat22AY.360.000296
ORF1ab/nsp12273Y273YtaTtaC22AY.4.50.000215
ORF1ab/nsp12273Y273HTatCat22AY.420.00008
ORF1ab/nsp12273Y273HTatCat22AY.430.000009
ORF1ab/nsp12273Y273CtAttGt22AY.9.20.000073
ORF1ab/nsp12273Y273YtaTtaC22AY.930.000546
ORF1ab/nsp12273Y273YtaTtaC22B0.000256
ORF1ab/nsp12273Y273YtaTtaC22B.1.10.000036
ORF1ab/nsp12273Y273HTatCat22B.1.10.000036
ORF1ab/nsp12273Y273YtaTtaC22B.1.1.3480.001592
ORF1ab/nsp12273Y273YtaTtaC22B.1.1470.001512
ORF1ab/nsp12273Y273NTatAat22B.1.1770.000026
ORF1ab/nsp12273Y273CtAttGt22B.1.20.000018
ORF1ab/nsp12273Y273NTatAat22B.1.20.000018
ORF1ab/nsp12273Y273HTatCat22B.1.2340.000264
ORF1ab/nsp12273Y273YtaTtaC22B.1.2580.000133
ORF1ab/nsp12273Y273CtAttGt22B.1.36.10.002281
ORF1ab/nsp12273Y273YtaTtaC22B.1.4270.000101
ORF1ab/nsp12273Y273YtaTtaC22B.1.5750.000607
ORF1ab/nsp12273Y273del1taTta-22B.1.6270.00404
ORF1ab/nsp12273Y273YtaTtaC22Q.80.00033
ORF1ab/nsp12273Y273YtaTtaC110.055556
ORF1ab/nsp12273Y273CtAttGt11AE.30.032258
ORF1ab/nsp12273Y273del2tATt--11All0
ORF1ab/nsp12273Y273StAttCt11All0
ORF1ab/nsp12273Y273YtaTtaC11AY.10.000396
ORF1ab/nsp12273Y273HTatCat11AY.1000.000046
ORF1ab/nsp12273Y273NTatAat11AY.1030.000006
ORF1ab/nsp12273Y273NTatAat11AY.1050.000643
ORF1ab/nsp12273Y273YtaTtaC11AY.1070.000466
ORF1ab/nsp12273Y273YtaTtaC11AY.1130.000142
ORF1ab/nsp12273Y273HTatCat11AY.1150.005208
ORF1ab/nsp12273Y273CtAttGt11AY.1170.000085
ORF1ab/nsp12273Y273XtaTtaA11AY.1190.000035
ORF1ab/nsp12273Y273HTatCat11AY.120.000316
ORF1ab/nsp12273Y273CtAttGt11AY.230.00007
ORF1ab/nsp12273Y273NTatAat11AY.260.000028
ORF1ab/nsp12273Y273CtAttGt11AY.260.000028
ORF1ab/nsp12273Y273YtaTtaC11AY.260.000028
ORF1ab/nsp12273Y273CtAttGt11AY.30.00001
ORF1ab/nsp12273Y273YtaTtaC11AY.3.10.000085
ORF1ab/nsp12273Y273YtaTtaC11AY.300.000396
ORF1ab/nsp12273Y273HTatCat11AY.330.000067
ORF1ab/nsp12273Y273YtaTtaC11AY.330.000067
ORF1ab/nsp12273Y273CtAttGt11AY.330.000067
ORF1ab/nsp12273Y273NTatAat11AY.370.000316
ORF1ab/nsp12273Y273del2tATt--11AY.40.000002
ORF1ab/nsp12273Y273StAttCt11AY.4.20.000022
ORF1ab/nsp12273Y273CtAttGt11AY.4.20.000022
ORF1ab/nsp12273Y273CtAttGt11AY.4.2.10.000149
ORF1ab/nsp12273Y273YtaTtaC11AY.4.40.000409
ORF1ab/nsp12273Y273YtaTtaC11AY.430.000004
ORF1ab/nsp12273Y273NTatAat11AY.440.000006
ORF1ab/nsp12273Y273CtAttGt11AY.470.000031
ORF1ab/nsp12273Y273YtaTtaC11AY.50.000021
ORF1ab/nsp12273Y273HTatCat11AY.590.00053
ORF1ab/nsp12273Y273NTatAat11AY.680.000274
ORF1ab/nsp12273Y273CtAttGt11AY.7.10.000113
ORF1ab/nsp12273Y273CtAttGt11AY.770.001127
ORF1ab/nsp12273Y273YtaTtaC11AY.9.20.000037
ORF1ab/nsp12273Y273HTatCat11AY.9.20.000037
ORF1ab/nsp12273Y273YtaTtaC11AY.920.000287
ORF1ab/nsp12273Y273HTatCat11B.10.000009
ORF1ab/nsp12273Y273NTatAat11B.10.000009
ORF1ab/nsp12273Y273NTatAat11B.1.10.000018
ORF1ab/nsp12273Y273delTAT---11B.1.10.000018
ORF1ab/nsp12273Y273delTAT---11B.1.1.10.000327
ORF1ab/nsp12273Y273YtaTtaC11B.1.1.10.000327
ORF1ab/nsp12273Y273HTatCat11B.1.1.1570.000913
ORF1ab/nsp12273Y273FtAttTt11B.1.1.2770.000759
ORF1ab/nsp12273Y273CtAttGt11B.1.1.3020.002075
ORF1ab/nsp12273Y273CtAttGt11B.1.1.3170.000412
ORF1ab/nsp12273Y273NTatAat11B.1.1.370.000193
ORF1ab/nsp12273Y273CtAttGt11B.1.1.390.00051
ORF1ab/nsp12273Y273HTatCat11B.1.1.5190.00004
ORF1ab/nsp12273Y273XtaTtaG11B.1.1.70.000001
ORF1ab/nsp12273Y273HTatCat11B.1.1.700.000341
ORF1ab/nsp12273Y273CtAttGt11B.1.1150.021739
ORF1ab/nsp12273Y273YtaTtaC11B.1.1390.000733
ORF1ab/nsp12273Y273CtAttGt11B.1.1390.000733
ORF1ab/nsp12273Y273YtaTtaC11B.1.1770.000013
ORF1ab/nsp12273Y273HTatCat11B.1.1770.000013
ORF1ab/nsp12273Y273NTatAat11B.1.177.770.000726
ORF1ab/nsp12273Y273NTatAat11B.1.2210.000071
ORF1ab/nsp12273Y273NTatAat11B.1.2580.000067
ORF1ab/nsp12273Y273HTatCat11B.1.2580.000067
ORF1ab/nsp12273Y273YtaTtaC11B.1.258.170.000104
ORF1ab/nsp12273Y273NTatAat11B.1.36.390.002217
ORF1ab/nsp12273Y273YtaTtaC11B.1.3960.000706
ORF1ab/nsp12273Y273NTatAat11B.1.4000.000429
ORF1ab/nsp12273Y273HTatCat11B.1.4000.000429
ORF1ab/nsp12273Y273YtaTtaC11B.1.4290.000024
ORF1ab/nsp12273Y273CtAttGt11B.1.4290.000024
ORF1ab/nsp12273Y273YtaTtaC11B.1.4970.000315
ORF1ab/nsp12273Y273HTatCat11B.1.5090.000866
ORF1ab/nsp12273Y273CtAttGt11B.1.5260.000024
ORF1ab/nsp12273Y273NTatAat11B.1.5260.000024
ORF1ab/nsp12273Y273HTatCat11B.1.5700.002941
ORF1ab/nsp12273Y273YtaTtaC11B.1.5950.000261
ORF1ab/nsp12273Y273HTatCat11B.1.6210.000089
ORF1ab/nsp12273Y273CtAttGt11B.1.6370.000073
ORF1ab/nsp12273Y273CtAttGt11B.300.014706
ORF1ab/nsp12273Y273YtaTtaC11C.360.000911
ORF1ab/nsp12273Y273FtAttTt11D.20.000075
ORF1ab/nsp12273Y273CtAttGt11D.20.000075
ORF1ab/nsp12273Y273HTatCat11D.20.000075
ORF1ab/nsp12273Y273YtaTtaC11P.1.150.000232
ORF1ab/nsp12273Y273YtaTtaC11P.1.170.000162