CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 269 & Codon = gGt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12269D269GD4661GnonsyngAtgGt431043090.99976814245-14247

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12269D269GgAtgGt43094310All0.000824
ORF1ab/nsp12269D269GgAtgGt24542454AY.630.949323
ORF1ab/nsp12269D269GgAtgGt813813B.1.617.20.003061
ORF1ab/nsp12269D269GgAtgGt390390AY.390.009637
ORF1ab/nsp12269D269GgAtgGt162162AY.610.016974
ORF1ab/nsp12269D269GgAtgGt5050B.1.6280.017618
ORF1ab/nsp12269D269GgAtgGt4747AY.40.000073
ORF1ab/nsp12269D269GgAtgGt4141AY.430.000182
ORF1ab/nsp12269D269GgAtgGt3838AY.440.000231
ORF1ab/nsp12269D269GgAtgGt3232B.1.1.70.000029
ORF1ab/nsp12269D269GgAtgGt2828AY.30.000278
ORF1ab/nsp12269D269GgAtgGt2525B.1.1.5190.000993
ORF1ab/nsp12269D269GgAtgGt2020AY.1200.000744
ORF1ab/nsp12269D269GgAtgGt1818AY.250.000108
ORF1ab/nsp12269D269GgAtgGt1212AY.260.00034
ORF1ab/nsp12269D269GgAtgGt1111B.1.3110.00302
ORF1ab/nsp12269D269GgAtgGt1010AY.10.003957
ORF1ab/nsp12269D269GgAtgGt1010AY.75.10.001803
ORF1ab/nsp12269D269GgAtgGt99AY.1020.000239
ORF1ab/nsp12269D269GgAtgGt77AY.1030.000043
ORF1ab/nsp12269D269GgAtgGt77AY.710.003325
ORF1ab/nsp12269D269GgAtgGt77B.10.000064
ORF1ab/nsp12269D269GgAtgGt44AY.1170.000338
ORF1ab/nsp12269D269GgAtgGt44AY.1190.000141
ORF1ab/nsp12269D269GgAtgGt44AY.190.004561
ORF1ab/nsp12269D269GgAtgGt44AY.230.000279
ORF1ab/nsp12269D269GgAtgGt44AY.290.000063
ORF1ab/nsp12269D269GgAtgGt44AY.39.10.000158
ORF1ab/nsp12269D269GgAtgGt44B.1.5260.000094
ORF1ab/nsp12269D269GgAtgGt33AY.1180.000188
ORF1ab/nsp12269D269GgAtgGt33AY.120.000948
ORF1ab/nsp12269D269GgAtgGt33AY.130.000483
ORF1ab/nsp12269D269GgAtgGt33AY.450.000365
ORF1ab/nsp12269D269GgAtgGt33AY.980.000237
ORF1ab/nsp12269D269GgAtgGt33B.1.3510.000089
ORF1ab/nsp12269D269GgAtgGt120.055556
ORF1ab/nsp12269D269GgAtgGt22AY.160.000759
ORF1ab/nsp12269D269GgAtgGt22AY.360.000296
ORF1ab/nsp12269D269GgAtgGt22AY.420.00008
ORF1ab/nsp12269D269GgAtgGt22AY.480.00093
ORF1ab/nsp12269D269GgAtgGt22AY.60.000082
ORF1ab/nsp12269D269GgAtgGt22AY.750.000112
ORF1ab/nsp12269D269GgAtgGt22B0.000256
ORF1ab/nsp12269D269GgAtgGt22B.1.177.790.004684
ORF1ab/nsp12269D269GgAtgGt22B.1.2580.000133
ORF1ab/nsp12269D269GgAtgGt22B.1.575.10.004878
ORF1ab/nsp12269D269GgAtgGt22B.1.5770.001375
ORF1ab/nsp12269D269GgAtgGt22B.1.6190.001742
ORF1ab/nsp12269D269GgAtgGt22P.10.000032
ORF1ab/nsp12269D269GgAtgGt22Q.30.00029
ORF1ab/nsp12269D269GgAtgGt11AY.1000.000046
ORF1ab/nsp12269D269GgAtgGt11AY.1080.001103
ORF1ab/nsp12269D269GgAtgGt11AY.1100.000113
ORF1ab/nsp12269D269GgAtgGt11AY.16.10.00047
ORF1ab/nsp12269D269GgAtgGt11AY.220.002092
ORF1ab/nsp12269D269GgAtgGt11AY.330.000067
ORF1ab/nsp12269D269GgAtgGt11AY.340.000097
ORF1ab/nsp12269D269GgAtgGt11AY.380.000499
ORF1ab/nsp12269D269GgAtgGt11AY.4.20.000022
ORF1ab/nsp12269D269GgAtgGt11AY.4.50.000107
ORF1ab/nsp12269D269GgAtgGt11AY.460.000104
ORF1ab/nsp12269D269GgAtgGt11AY.46.60.000072
ORF1ab/nsp12269D269GgAtgGt11AY.50.000021
ORF1ab/nsp12269D269GgAtgGt11AY.5.30.000337
ORF1ab/nsp12269D269GgAtgGt11AY.500.000799
ORF1ab/nsp12269D269GgAtgGt11AY.540.000095
ORF1ab/nsp12269D269GgAtgGt11AY.580.000907
ORF1ab/nsp12269D269GgAtgGt11AY.590.00053
ORF1ab/nsp12269D269GgAtgGt11AY.600.000938
ORF1ab/nsp12269D269GgAtgGt11AY.620.000436
ORF1ab/nsp12269D269GgAtgGt11AY.670.000464
ORF1ab/nsp12269D269GgAtgGt11AY.730.000665
ORF1ab/nsp12269D269GgAtgGt11AY.770.001127
ORF1ab/nsp12269D269GgAtgGt11AY.840.000437
ORF1ab/nsp12269D269GgAtgGt11AY.870.000833
ORF1ab/nsp12269D269GgAtgGt11AY.9.20.000037
ORF1ab/nsp12269D269GgAtgGt11AY.920.000287
ORF1ab/nsp12269D269GgAtgGt11AY.98.10.000048
ORF1ab/nsp12269D269GgAtgGt11B.1.1.3060.000438
ORF1ab/nsp12269D269GgAtgGt11B.1.1.3160.000925
ORF1ab/nsp12269D269GgAtgGt11B.1.1.330.000421
ORF1ab/nsp12269D269GgAtgGt11B.1.177.570.000281
ORF1ab/nsp12269D269GgAtgGt11B.1.20.000009
ORF1ab/nsp12269D269GgAtgGt11B.1.2340.000132
ORF1ab/nsp12269D269GgAtgGt11B.1.3560.001727
ORF1ab/nsp12269D269GgAtgGt11B.1.4270.00005
ORF1ab/nsp12269D269GgAtgGt11B.1.4970.000315
ORF1ab/nsp12269D269GgAtgGt11B.1.5170.000427
ORF1ab/nsp12269D269GgAtgGt11B.1.5510.00129
ORF1ab/nsp12269D269GgAtgGt11B.1.5960.000087
ORF1ab/nsp12269D269GgAtgGt11B.1.617.10.000129
ORF1ab/nsp12269D269GgAtgGt11B.60.00091
ORF1ab/nsp12269D269GgAtgGt11D.20.000075

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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