CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 264

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12264P264SP4656SnonsynCctTct190719050.99895114230-14232
ORF1ab/nsp12264P264SP4656SnonsynCcTTcC190710.00052438414230-14232
ORF1ab/nsp12264P264SP4656SnonsynCcTTcA190710.00052438414230-14232
ORF1ab/nsp12264P264TP4656TnonsynCctAct12461246114230-14232
ORF1ab/nsp12264P264PP4656PsynccTccC4274110.96252914230-14232
ORF1ab/nsp12264P264PP4656PsynccTccA427120.02810314230-14232
ORF1ab/nsp12264P264PP4656PsynccTccG42740.0093676814230-14232
ORF1ab/nsp12264P264AP4656AnonsynCctGct77750.97402614230-14232
ORF1ab/nsp12264P264AP4656AnonsynCcTGcC7720.02597414230-14232
ORF1ab/nsp12264P264HP4656HnonsyncCtcAt6565114230-14232
ORF1ab/nsp12264P264LP4656LnonsyncCtcTt32280.87514230-14232
ORF1ab/nsp12264P264LP4656LnonsyncCTcTA3220.062514230-14232
ORF1ab/nsp12264P264LP4656LnonsyncCTcTC3210.0312514230-14232
ORF1ab/nsp12264P264LP4656LnonsynCCTTTA3210.0312514230-14232
ORF1ab/nsp12264P264delP4656deldelCCT---1818114230-14232
ORF1ab/nsp12264P264RP4656RnonsyncCtcGt1111114230-14232
ORF1ab/nsp12264P264del1P4656del1delccTcc-530.614230-14232
ORF1ab/nsp12264P264del1P4656del1delCct-ct520.414230-14232
ORF1ab/nsp12264P264del2P4656del2delCCt--t430.7514230-14232
ORF1ab/nsp12264P264del2P4656del2delcCTc--410.2514230-14232
ORF1ab/nsp12264P264FP4656FnonsynCCTTTC210.514230-14232
ORF1ab/nsp12264P264FP4656FnonsynCCtTTt210.514230-14232

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12264P264SCctTct19051907All0.000364
ORF1ab/nsp12264P264SCcTTcC11907All0
ORF1ab/nsp12264P264SCcTTcA11907All0
ORF1ab/nsp12264P264TCctAct12461246All0.000238
ORF1ab/nsp12264P264TCctAct11171117B.1.3670.885103
ORF1ab/nsp12264P264SCctTct716716B.1.1.3770.98895
ORF1ab/nsp12264P264PccTccC411427All0.000079
ORF1ab/nsp12264P264PccTccA12427All0.000002
ORF1ab/nsp12264P264PccTccG4427All0.000001
ORF1ab/nsp12264P264SCctTct219219B.1.1.70.000196
ORF1ab/nsp12264P264PccTccC168172B.1.1.70.00015
ORF1ab/nsp12264P264PccTccG2172B.1.1.70.000002
ORF1ab/nsp12264P264PccTccA2172B.1.1.70.000002
ORF1ab/nsp12264P264SCctTct134134AY.1130.01908
ORF1ab/nsp12264P264PccTccC122122AY.140.010738
ORF1ab/nsp12264P264SCctTct8282AY.390.002026
ORF1ab/nsp12264P264SCctTct8181B.1.617.20.000305
ORF1ab/nsp12264P264ACctGct7577All0.000014
ORF1ab/nsp12264P264ACcTGcC277All0
ORF1ab/nsp12264P264TCctAct7474B.10.000678
ORF1ab/nsp12264P264SCctTct6666AY.40.000103
ORF1ab/nsp12264P264HcCtcAt6565All0.000012
ORF1ab/nsp12264P264ACctGct6464AY.40.0001
ORF1ab/nsp12264P264SCctTct4343AY.1030.000267
ORF1ab/nsp12264P264SCctTct3939B.1.20.000343
ORF1ab/nsp12264P264SCctTct3434B.1.2430.002366
ORF1ab/nsp12264P264LcCtcTt2832All0.000005
ORF1ab/nsp12264P264LcCTcTA232All0
ORF1ab/nsp12264P264LcCTcTC132All0
ORF1ab/nsp12264P264LCCTTTA132All0
ORF1ab/nsp12264P264SCctTct3131B.1.4800.077114
ORF1ab/nsp12264P264SCctTct3030B.10.000275
ORF1ab/nsp12264P264SCctTct2929AY.300.011476
ORF1ab/nsp12264P264SCctTct2828B.1.1.560.5
ORF1ab/nsp12264P264SCctTct2626AY.440.000158
ORF1ab/nsp12264P264HcCtcAt2121B.1.1.70.000019
ORF1ab/nsp12264P264delCCT---1818All0.000003
ORF1ab/nsp12264P264SCctTct1818B.1.5960.001568
ORF1ab/nsp12264P264PccTccC1717AY.340.001648
ORF1ab/nsp12264P264SCctTct1717P.10.000268
ORF1ab/nsp12264P264SCctTct1616B.1.1770.000211
ORF1ab/nsp12264P264SCctTct1515AY.1020.000398
ORF1ab/nsp12264P264SCctTct1212AY.250.000072
ORF1ab/nsp12264P264SCctTct1212AY.3.10.001023
ORF1ab/nsp12264P264PccTccC1212B.1.20.000106
ORF1ab/nsp12264P264RcCtcGt1111All0.000002
ORF1ab/nsp12264P264SCctTct1111AY.430.000049
ORF1ab/nsp12264P264PccTccC1010AY.4.20.000217
ORF1ab/nsp12264P264SCctTct1010AY.610.001048
ORF1ab/nsp12264P264SCctTct1010B.1.177.760.024938
ORF1ab/nsp12264P264PccTccC99AY.360.001334
ORF1ab/nsp12264P264PccTccC99B.1.2400.00194
ORF1ab/nsp12264P264SCctTct99B.1.5970.041667
ORF1ab/nsp12264P264HcCtcAt88AY.30.00008
ORF1ab/nsp12264P264TCctAct88AY.4.50.00086
ORF1ab/nsp12264P264RcCtcGt88AY.530.0023
ORF1ab/nsp12264P264SCctTct88B.1.177.40.001688
ORF1ab/nsp12264P264SCctTct88B.520.080808
ORF1ab/nsp12264P264PccTccC77AY.1030.000043
ORF1ab/nsp12264P264PccTccC77AY.46.60.000505
ORF1ab/nsp12264P264SCctTct77B.1.1490.023973
ORF1ab/nsp12264P264TCctAct66AY.1000.000276
ORF1ab/nsp12264P264HcCtcAt66AY.40.000009
ORF1ab/nsp12264P264SCctTct66B0.000767
ORF1ab/nsp12264P264SCctTct66B.1.4290.000141
ORF1ab/nsp12264P264TCctAct66B.1.5960.000523
ORF1ab/nsp12264P264del1ccTcc-35All0.000001
ORF1ab/nsp12264P264del1Cct-ct25All0
ORF1ab/nsp12264P264SCctTct55AY.1100.000563
ORF1ab/nsp12264P264SCctTct55AY.1190.000177
ORF1ab/nsp12264P264SCctTct55AY.30.00005
ORF1ab/nsp12264P264SCctTct55AY.460.00052
ORF1ab/nsp12264P264ACctGct55AY.50.000103
ORF1ab/nsp12264P264SCctTct55AY.740.000578
ORF1ab/nsp12264P264LcCtcTt55B.1.1.70.000004
ORF1ab/nsp12264P264SCctTct55B.1.360.00073
ORF1ab/nsp12264P264HcCtcAt55B.1.617.20.000019
ORF1ab/nsp12264P264SCctTct55C.370.00058
ORF1ab/nsp12264P264LcCTcTC140.055556
ORF1ab/nsp12264P264LcCTcTA140.055556
ORF1ab/nsp12264P264LCCTTTA140.055556
ORF1ab/nsp12264P264LcCtcTt140.055556
ORF1ab/nsp12264P264del2CCt--t34All0.000001
ORF1ab/nsp12264P264del2cCTc--14All0
ORF1ab/nsp12264P264PccTccC44AY.250.000024
ORF1ab/nsp12264P264SCctTct44AY.39.10.000158
ORF1ab/nsp12264P264HcCtcAt44AY.430.000018
ORF1ab/nsp12264P264PccTccC44AY.540.000381
ORF1ab/nsp12264P264SCctTct44AY.980.000316
ORF1ab/nsp12264P264TCctAct44B0.000511
ORF1ab/nsp12264P264delCCT---44B.1.1.70.000004
ORF1ab/nsp12264P264SCctTct44B.1.177.70.000659
ORF1ab/nsp12264P264SCctTct44B.1.4980.081633
ORF1ab/nsp12264P264LcCtcTt44D.20.0003
ORF1ab/nsp12264P264SCctTct44P.1.150.000929
ORF1ab/nsp12264P264SCctTct44Q.10.000505
ORF1ab/nsp12264P264SCctTct44Q.30.00058
ORF1ab/nsp12264P264PccTccC230.111111
ORF1ab/nsp12264P264ACctGct230.111111
ORF1ab/nsp12264P264PccTccA130.055556
ORF1ab/nsp12264P264SCctTct130.055556
ORF1ab/nsp12264P264SCcTTcC130.055556
ORF1ab/nsp12264P264ACcTGcC130.055556
ORF1ab/nsp12264P264SCcTTcA130.055556
ORF1ab/nsp12264P264SCctTct33A0.001161
ORF1ab/nsp12264P264SCctTct33AY.230.000209
ORF1ab/nsp12264P264TCctAct33AY.250.000018
ORF1ab/nsp12264P264SCctTct33AY.290.000047
ORF1ab/nsp12264P264PccTccC23AY.300.000791
ORF1ab/nsp12264P264PccTccA13AY.300.000396
ORF1ab/nsp12264P264PccTccC33AY.40.000005
ORF1ab/nsp12264P264SCctTct33AY.46.40.000494
ORF1ab/nsp12264P264PccTccC33AY.590.001589
ORF1ab/nsp12264P264HcCtcAt33B.10.000027
ORF1ab/nsp12264P264SCctTct33B.1.10.000054
ORF1ab/nsp12264P264SCctTct33B.1.177.540.001819
ORF1ab/nsp12264P264LcCtcTt33B.1.20.000026
ORF1ab/nsp12264P264TCctAct33B.1.2580.0002
ORF1ab/nsp12264P264RcCtcGt33B.1.617.20.000011
ORF1ab/nsp12264P264PccTccC33B.1.617.20.000011
ORF1ab/nsp12264P264SCctTct33D.20.000225
ORF1ab/nsp12264P264SCctTct33P.1.140.000143
ORF1ab/nsp12264P264FCCtTTt120.055556
ORF1ab/nsp12264P264FCCTTTC120.055556
ORF1ab/nsp12264P264FCCTTTC12All0
ORF1ab/nsp12264P264FCCtTTt12All0
ORF1ab/nsp12264P264SCctTct22AY.1000.000092
ORF1ab/nsp12264P264HcCtcAt22AY.1020.000053
ORF1ab/nsp12264P264LcCtcTt22AY.1030.000012
ORF1ab/nsp12264P264TCctAct22AY.1050.001286
ORF1ab/nsp12264P264SCctTct22AY.1170.000169
ORF1ab/nsp12264P264SCctTct22AY.1200.000074
ORF1ab/nsp12264P264PccTccC22AY.160.000759
ORF1ab/nsp12264P264SCctTct22AY.200.000078
ORF1ab/nsp12264P264PccTccC22AY.380.000999
ORF1ab/nsp12264P264PccTccC22AY.39.20.003082
ORF1ab/nsp12264P264HcCtcAt22AY.420.00008
ORF1ab/nsp12264P264SCctTct22AY.420.00008
ORF1ab/nsp12264P264PccTccC22AY.430.000009
ORF1ab/nsp12264P264SCctTct22AY.450.000243
ORF1ab/nsp12264P264SCctTct22AY.620.000871
ORF1ab/nsp12264P264PccTccA22AY.850.000854
ORF1ab/nsp12264P264SCctTct22AY.9.20.000073
ORF1ab/nsp12264P264PccTccC22B.1.1.250.001137
ORF1ab/nsp12264P264PccTccC22B.1.1.370.000386
ORF1ab/nsp12264P264SCctTct22B.1.1.4340.000697
ORF1ab/nsp12264P264SCctTct22B.1.1.4860.003155
ORF1ab/nsp12264P264TCctAct22B.1.1.560.035714
ORF1ab/nsp12264P264del2CCt--t22B.1.1.70.000002
ORF1ab/nsp12264P264TCctAct22B.1.1600.000062
ORF1ab/nsp12264P264TCctAct22B.1.1770.000026
ORF1ab/nsp12264P264LcCTcTA12B.1.1770.000013
ORF1ab/nsp12264P264LcCtcTt12B.1.1770.000013
ORF1ab/nsp12264P264PccTccC12B.1.1770.000013
ORF1ab/nsp12264P264PccTccA12B.1.1770.000013
ORF1ab/nsp12264P264SCctTct22B.1.177.730.001133
ORF1ab/nsp12264P264SCctTct22B.1.177.860.000367
ORF1ab/nsp12264P264SCctTct22B.1.2340.000264
ORF1ab/nsp12264P264SCctTct22B.1.3970.009709
ORF1ab/nsp12264P264SCctTct22B.1.4270.000101
ORF1ab/nsp12264P264PccTccC22B.1.5260.000047
ORF1ab/nsp12264P264SCctTct22B.1.5260.000047
ORF1ab/nsp12264P264LcCtcTt22B.1.5960.000174
ORF1ab/nsp12264P264TCctAct22B.1.617.20.000008
ORF1ab/nsp12264P264ACcTGcC12B.1.617.20.000004
ORF1ab/nsp12264P264ACctGct12B.1.617.20.000004
ORF1ab/nsp12264P264SCctTct22B.1.6300.010471
ORF1ab/nsp12264P264PccTccC22C.370.000232
ORF1ab/nsp12264P264TCctAct22P.10.000032
ORF1ab/nsp12264P264HcCtcAt11A0.000387
ORF1ab/nsp12264P264SCctTct11AY.100.00053
ORF1ab/nsp12264P264ACctGct11AY.1000.000046
ORF1ab/nsp12264P264TCctAct11AY.1030.000006
ORF1ab/nsp12264P264del1ccTcc-11AY.1030.000006
ORF1ab/nsp12264P264TCctAct11AY.1040.001984
ORF1ab/nsp12264P264HcCtcAt11AY.1090.00074
ORF1ab/nsp12264P264PccTccA11AY.1170.000085
ORF1ab/nsp12264P264SCctTct11AY.1180.000063
ORF1ab/nsp12264P264TCctAct11AY.1190.000035
ORF1ab/nsp12264P264delCCT---11AY.1200.000037
ORF1ab/nsp12264P264SCctTct11AY.140.000088
ORF1ab/nsp12264P264LcCtcTt11AY.140.000088
ORF1ab/nsp12264P264SCctTct11AY.16.10.00047
ORF1ab/nsp12264P264PccTccC11AY.190.00114
ORF1ab/nsp12264P264delCCT---11AY.250.000006
ORF1ab/nsp12264P264SCctTct11AY.260.000028
ORF1ab/nsp12264P264PccTccC11AY.290.000016
ORF1ab/nsp12264P264HcCtcAt11AY.330.000067
ORF1ab/nsp12264P264SCctTct11AY.340.000097
ORF1ab/nsp12264P264PccTccC11AY.390.000025
ORF1ab/nsp12264P264LcCtcTt11AY.40.000002
ORF1ab/nsp12264P264SCctTct11AY.4.2.10.000149
ORF1ab/nsp12264P264SCctTct11AY.4.50.000107
ORF1ab/nsp12264P264delCCT---11AY.430.000004
ORF1ab/nsp12264P264LcCtcTt11AY.430.000004
ORF1ab/nsp12264P264ACctGct11AY.440.000006
ORF1ab/nsp12264P264SCctTct11AY.46.50.000198
ORF1ab/nsp12264P264SCctTct11AY.50.000021
ORF1ab/nsp12264P264HcCtcAt11AY.520.000814
ORF1ab/nsp12264P264SCctTct11AY.540.000095
ORF1ab/nsp12264P264SCctTct11AY.580.000907
ORF1ab/nsp12264P264SCctTct11AY.60.000041
ORF1ab/nsp12264P264delCCT---11AY.650.000533
ORF1ab/nsp12264P264delCCT---11AY.660.00107
ORF1ab/nsp12264P264SCctTct11AY.7.10.000113
ORF1ab/nsp12264P264LcCtcTt11AY.7.10.000113
ORF1ab/nsp12264P264SCctTct11AY.710.000475
ORF1ab/nsp12264P264SCctTct11AY.750.000056
ORF1ab/nsp12264P264SCctTct11AY.75.10.00018
ORF1ab/nsp12264P264delCCT---11AY.80.000606
ORF1ab/nsp12264P264SCctTct11AY.840.000437
ORF1ab/nsp12264P264SCctTct11AY.850.000427
ORF1ab/nsp12264P264HcCtcAt11AY.880.000884
ORF1ab/nsp12264P264PccTccC11AY.90.000068
ORF1ab/nsp12264P264HcCtcAt11AY.9.10.000084
ORF1ab/nsp12264P264SCctTct11AY.920.000287
ORF1ab/nsp12264P264TCctAct11AY.980.000079
ORF1ab/nsp12264P264LcCtcTt11AY.98.10.000048
ORF1ab/nsp12264P264LcCtcTt11B0.000128
ORF1ab/nsp12264P264HcCtcAt11B0.000128
ORF1ab/nsp12264P264del1ccTcc-11B.10.000009
ORF1ab/nsp12264P264PccTccC11B.10.000009
ORF1ab/nsp12264P264del2cCTc--11B.10.000009
ORF1ab/nsp12264P264PccTccC11B.1.10.000018
ORF1ab/nsp12264P264TCctAct11B.1.10.000018
ORF1ab/nsp12264P264delCCT---11B.1.10.000018
ORF1ab/nsp12264P264delCCT---11B.1.1.10.000327
ORF1ab/nsp12264P264SCctTct11B.1.1.1980.001468
ORF1ab/nsp12264P264SCctTct11B.1.1.2170.003636
ORF1ab/nsp12264P264SCctTct11B.1.1.280.000311
ORF1ab/nsp12264P264SCctTct11B.1.1.2840.000107
ORF1ab/nsp12264P264SCctTct11B.1.1.30.008696
ORF1ab/nsp12264P264LcCtcTt11B.1.1.3060.000438
ORF1ab/nsp12264P264SCctTct11B.1.1.3060.000438
ORF1ab/nsp12264P264SCctTct11B.1.1.3160.000925
ORF1ab/nsp12264P264SCctTct11B.1.1.3180.000302
ORF1ab/nsp12264P264SCctTct11B.1.1.3260.001761
ORF1ab/nsp12264P264SCctTct11B.1.1.330.000421
ORF1ab/nsp12264P264HcCtcAt11B.1.1.4160.000905
ORF1ab/nsp12264P264PccTccC11B.1.1.4200.001006
ORF1ab/nsp12264P264SCctTct11B.1.1.4320.001266
ORF1ab/nsp12264P264TCctAct11B.1.1.4340.000349
ORF1ab/nsp12264P264SCctTct11B.1.1.500.000679
ORF1ab/nsp12264P264SCctTct11B.1.1.5260.003546
ORF1ab/nsp12264P264del1Cct-ct11B.1.1.560.017857
ORF1ab/nsp12264P264TCctAct11B.1.1.70.000001
ORF1ab/nsp12264P264TCctAct11B.1.1570.002985
ORF1ab/nsp12264P264PccTccA11B.1.177.320.00135
ORF1ab/nsp12264P264SCctTct11B.1.177.420.000894
ORF1ab/nsp12264P264TCctAct11B.1.177.60.000977
ORF1ab/nsp12264P264PccTccG11B.1.177.600.000218
ORF1ab/nsp12264P264SCctTct11B.1.177.710.010101
ORF1ab/nsp12264P264SCctTct11B.1.177.810.000189
ORF1ab/nsp12264P264delCCT---11B.1.177.830.001481
ORF1ab/nsp12264P264TCctAct11B.1.177.860.000183
ORF1ab/nsp12264P264SCctTct11B.1.177.870.000728
ORF1ab/nsp12264P264del1ccTcc-11B.1.20.000009
ORF1ab/nsp12264P264HcCtcAt11B.1.20.000009
ORF1ab/nsp12264P264SCctTct11B.1.2210.000071
ORF1ab/nsp12264P264TCctAct11B.1.2210.000071
ORF1ab/nsp12264P264SCctTct11B.1.2400.000216
ORF1ab/nsp12264P264SCctTct11B.1.2580.000067
ORF1ab/nsp12264P264delCCT---11B.1.2580.000067
ORF1ab/nsp12264P264HcCtcAt11B.1.3010.005917
ORF1ab/nsp12264P264SCctTct11B.1.3110.000275
ORF1ab/nsp12264P264PccTccC11B.1.3110.000275
ORF1ab/nsp12264P264SCctTct11B.1.3510.00003
ORF1ab/nsp12264P264PccTccC11B.1.3510.00003
ORF1ab/nsp12264P264SCctTct11B.1.36.170.000494
ORF1ab/nsp12264P264SCctTct11B.1.36.360.000602
ORF1ab/nsp12264P264PccTccA11B.1.36.80.001
ORF1ab/nsp12264P264SCctTct11B.1.3670.000792
ORF1ab/nsp12264P264SCctTct11B.1.3690.000285
ORF1ab/nsp12264P264SCctTct11B.1.3770.004566
ORF1ab/nsp12264P264del1Cct-ct11B.1.3990.001934
ORF1ab/nsp12264P264SCctTct11B.1.416.10.001563
ORF1ab/nsp12264P264LcCtcTt11B.1.4270.00005
ORF1ab/nsp12264P264HcCtcAt11B.1.4290.000024
ORF1ab/nsp12264P264SCctTct11B.1.4590.004082
ORF1ab/nsp12264P264LcCtcTt11B.1.4590.004082
ORF1ab/nsp12264P264SCctTct11B.1.5230.002451
ORF1ab/nsp12264P264del2CCt--t11B.1.5250.000113
ORF1ab/nsp12264P264TCctAct11B.1.5330.009615
ORF1ab/nsp12264P264HcCtcAt11B.1.5460.003704
ORF1ab/nsp12264P264SCctTct11B.1.5750.000303
ORF1ab/nsp12264P264PccTccC11B.1.5760.000907
ORF1ab/nsp12264P264SCctTct11B.1.5950.000261
ORF1ab/nsp12264P264SCctTct11B.1.6000.005848
ORF1ab/nsp12264P264delCCT---11B.1.617.20.000004
ORF1ab/nsp12264P264SCctTct11B.1.6210.000089
ORF1ab/nsp12264P264HcCtcAt11B.1.6230.000536
ORF1ab/nsp12264P264ACctGct11B.1.6370.000073
ORF1ab/nsp12264P264SCctTct11B.1.80.001972
ORF1ab/nsp12264P264TCctAct11B.1.90.006173
ORF1ab/nsp12264P264SCctTct11C.160.00106
ORF1ab/nsp12264P264delCCT---11C.170.055556
ORF1ab/nsp12264P264delCCT---11C.360.000911
ORF1ab/nsp12264P264SCctTct11C.360.000911
ORF1ab/nsp12264P264PccTccA11D.20.000075
ORF1ab/nsp12264P264PccTccC11L.30.003546
ORF1ab/nsp12264P264HcCtcAt11P.1.120.000484
ORF1ab/nsp12264P264LcCtcTt11P.1.120.000484
ORF1ab/nsp12264P264SCctTct11P.1.120.000484
ORF1ab/nsp12264P264PccTccA11P.1.20.001156
ORF1ab/nsp12264P264SCctTct11P.1.40.000977
ORF1ab/nsp12264P264PccTccG11Q.10.000126
ORF1ab/nsp12264P264SCctTct11Q.80.000165
ORF1ab/nsp12264P264delCCT---11Q.80.000165
ORF1ab/nsp12264P264PccTccC11R.10.00009