CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 261

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12261L261XL4653XnonsyntTatGa5835800.99485414221-14223
ORF1ab/nsp12261L261XL4653XnonsyntTatAa58330.005145814221-14223
ORF1ab/nsp12261L261CL4653CnonsyntTAtGC3403390.99705914221-14223
ORF1ab/nsp12261L261CL4653CnonsyntTAtGT34010.0029411814221-14223
ORF1ab/nsp12261L261LL4653LsynttAttG3362760.82142914221-14223
ORF1ab/nsp12261L261LL4653LsynTtaCta336580.17261914221-14223
ORF1ab/nsp12261L261LL4653LsynTtACtG33610.0029761914221-14223
ORF1ab/nsp12261L261LL4653LsynTtACtT33610.0029761914221-14223
ORF1ab/nsp12261L261SL4653SnonsyntTatCa50460.9214221-14223
ORF1ab/nsp12261L261SL4653SnonsyntTAtCC5020.0414221-14223
ORF1ab/nsp12261L261SL4653SnonsyntTAtCT5010.0214221-14223
ORF1ab/nsp12261L261SL4653SnonsyntTAtCG5010.0214221-14223
ORF1ab/nsp12261L261VL4653VnonsynTtaGta37360.97297314221-14223
ORF1ab/nsp12261L261VL4653VnonsynTtAGtG3710.02702714221-14223
ORF1ab/nsp12261L261IL4653InonsynTtaAta19180.94736814221-14223
ORF1ab/nsp12261L261IL4653InonsynTtAAtT1910.052631614221-14223
ORF1ab/nsp12261L261delL4653deldelTTA---1515114221-14223
ORF1ab/nsp12261L261FL4653FnonsynttAttT12100.83333314221-14223
ORF1ab/nsp12261L261FL4653FnonsynttAttC1220.16666714221-14223
ORF1ab/nsp12261L261PL4653PnonsynTTaCCa430.7514221-14223
ORF1ab/nsp12261L261PL4653PnonsynTTACCG410.2514221-14223
ORF1ab/nsp12261L261del1L4653del1delttAtt-320.66666714221-14223
ORF1ab/nsp12261L261del1L4653del1delTta-ta310.33333314221-14223
ORF1ab/nsp12261L261GL4653GnonsynTTAGGG210.514221-14223
ORF1ab/nsp12261L261GL4653GnonsynTTaGGa210.514221-14223
ORF1ab/nsp12261L261WL4653WnonsyntTAtGG11114221-14223

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12261L261XtTatGa580583All0.000111
ORF1ab/nsp12261L261XtTatAa3583All0.000001
ORF1ab/nsp12261L261CtTAtGC339340All0.000065
ORF1ab/nsp12261L261CtTAtGT1340All0
ORF1ab/nsp12261L261LttAttG276336All0.000053
ORF1ab/nsp12261L261LTtaCta58336All0.000011
ORF1ab/nsp12261L261LTtACtG1336All0
ORF1ab/nsp12261L261LTtACtT1336All0
ORF1ab/nsp12261L261LttAttG157172B.1.1.70.000141
ORF1ab/nsp12261L261LTtaCta15172B.1.1.70.000013
ORF1ab/nsp12261L261XtTatGa113113C.10.270335
ORF1ab/nsp12261L261XtTatGa9898B.1.1.4480.199187
ORF1ab/nsp12261L261XtTatGa9191B.10.000834
ORF1ab/nsp12261L261XtTatGa7474B.1.3510.0022
ORF1ab/nsp12261L261XtTatGa7070B.1.1.520.853659
ORF1ab/nsp12261L261CtTAtGC5555B.1.20.000484
ORF1ab/nsp12261L261CtTAtGC5151B.1.1690.761194
ORF1ab/nsp12261L261StTatCa4650All0.000009
ORF1ab/nsp12261L261StTAtCC250All0
ORF1ab/nsp12261L261StTAtCG150All0
ORF1ab/nsp12261L261StTAtCT150All0
ORF1ab/nsp12261L261CtTAtGC3940B.1.1.2910.028953
ORF1ab/nsp12261L261CtTAtGT140B.1.1.2910.000742
ORF1ab/nsp12261L261CtTAtGC3939B.10.000357
ORF1ab/nsp12261L261VTtaGta3637All0.000007
ORF1ab/nsp12261L261VTtAGtG137All0
ORF1ab/nsp12261L261CtTAtGC3333B.1.3330.347368
ORF1ab/nsp12261L261LttAttG3131B.1.438.10.003325
ORF1ab/nsp12261L261CtTAtGC3030B.1.4460.6
ORF1ab/nsp12261L261LTtaCta2323AY.60.000946
ORF1ab/nsp12261L261LttAttG2121AY.440.000128
ORF1ab/nsp12261L261ITtaAta1819All0.000003
ORF1ab/nsp12261L261ITtAAtT119All0
ORF1ab/nsp12261L261XtTatGa1919B.1.3810.148438
ORF1ab/nsp12261L261XtTatGa1616B.1.1.540.048338
ORF1ab/nsp12261L261StTatCa1616B.1.1.70.000014
ORF1ab/nsp12261L261delTTA---1515All0.000003
ORF1ab/nsp12261L261LttAttG1215B.10.00011
ORF1ab/nsp12261L261LTtaCta215B.10.000018
ORF1ab/nsp12261L261LTtACtT115B.10.000009
ORF1ab/nsp12261L261XtTatGa1515B.1.1.530.205479
ORF1ab/nsp12261L261FttAttT1012All0.000002
ORF1ab/nsp12261L261FttAttC212All0
ORF1ab/nsp12261L261XtTatGa1212B.1.1.1170.116505
ORF1ab/nsp12261L261CtTAtGC1212B.1.1.520.146341
ORF1ab/nsp12261L261XtTatGa1010B.1.10.000181
ORF1ab/nsp12261L261VTtaGta1010B.1.20.000088
ORF1ab/nsp12261L261LttAttG89AY.40.000012
ORF1ab/nsp12261L261LTtaCta19AY.40.000002
ORF1ab/nsp12261L261CtTAtGC99B.1.2400.00194
ORF1ab/nsp12261L261CtTAtGC99B.1.3410.204545
ORF1ab/nsp12261L261LttAttG99B.1.4290.000212
ORF1ab/nsp12261L261XtTatGa88B.1.1.570.091954
ORF1ab/nsp12261L261VTtaGta88B.1.177.600.001747
ORF1ab/nsp12261L261ITtaAta88B.1.3510.000238
ORF1ab/nsp12261L261XtTatGa88C.20.129032
ORF1ab/nsp12261L261XtTatGa77B.1.1.10.002287
ORF1ab/nsp12261L261CtTAtGC77B.1.1.2280.021341
ORF1ab/nsp12261L261LttAttG57B.1.617.20.000019
ORF1ab/nsp12261L261LTtaCta27B.1.617.20.000008
ORF1ab/nsp12261L261LttAttG66AY.360.000889
ORF1ab/nsp12261L261LttAttG66B.1.1.2160.005343
ORF1ab/nsp12261L261delTTA---66B.1.1.70.000005
ORF1ab/nsp12261L261StTatCa55AY.1030.000031
ORF1ab/nsp12261L261CtTAtGC55B.1.3710.005612
ORF1ab/nsp12261L261CtTAtGC55B.1.4260.005045
ORF1ab/nsp12261L261PTTaCCa34All0.000001
ORF1ab/nsp12261L261PTTACCG14All0
ORF1ab/nsp12261L261LttAttG24AY.1030.000012
ORF1ab/nsp12261L261LTtaCta24AY.1030.000012
ORF1ab/nsp12261L261XtTatGa44B.1.1.3720.002755
ORF1ab/nsp12261L261XtTatGa44B.1.1.3860.266667
ORF1ab/nsp12261L261XtTatGa44B.1.1.4590.061538
ORF1ab/nsp12261L261CtTAtGC44B.1.3690.001141
ORF1ab/nsp12261L261LttAttG130.055556
ORF1ab/nsp12261L261LTtACtG130.055556
ORF1ab/nsp12261L261LTtaCta130.055556
ORF1ab/nsp12261L261del1ttAtt-23All0
ORF1ab/nsp12261L261del1Tta-ta13All0
ORF1ab/nsp12261L261StTAtCC13B.1.1.2910.000742
ORF1ab/nsp12261L261StTatCa13B.1.1.2910.000742
ORF1ab/nsp12261L261StTAtCT13B.1.1.2910.000742
ORF1ab/nsp12261L261XtTatGa33B.1.1.340.039474
ORF1ab/nsp12261L261CtTAtGC33B.1.1.980.055556
ORF1ab/nsp12261L261CtTAtGC33B.1.2430.000209
ORF1ab/nsp12261L261StTatCa23B.1.3710.002245
ORF1ab/nsp12261L261StTAtCC13B.1.3710.001122
ORF1ab/nsp12261L261VTtaGta33B.1.617.20.000011
ORF1ab/nsp12261L261PTTaCCa120.055556
ORF1ab/nsp12261L261StTAtCG120.055556
ORF1ab/nsp12261L261PTTACCG120.055556
ORF1ab/nsp12261L261StTatCa120.055556
ORF1ab/nsp12261L261XtTatGa22A0.000774
ORF1ab/nsp12261L261GTTaGGa12All0
ORF1ab/nsp12261L261GTTAGGG12All0
ORF1ab/nsp12261L261VTtaGta22AY.1020.000053
ORF1ab/nsp12261L261StTatCa22AY.250.000012
ORF1ab/nsp12261L261ITtaAta22AY.40.000003
ORF1ab/nsp12261L261VTtaGta22AY.4.20.000043
ORF1ab/nsp12261L261LttAttG12AY.4.50.000107
ORF1ab/nsp12261L261LTtaCta12AY.4.50.000107
ORF1ab/nsp12261L261StTatCa22AY.430.000009
ORF1ab/nsp12261L261LTtaCta22AY.50.000041
ORF1ab/nsp12261L261StTatCa22B.10.000018
ORF1ab/nsp12261L261ITtAAtT12B.10.000009
ORF1ab/nsp12261L261ITtaAta12B.10.000009
ORF1ab/nsp12261L261LttAttG12B.1.1.2220.000204
ORF1ab/nsp12261L261LTtaCta12B.1.1.2220.000204
ORF1ab/nsp12261L261CtTAtGC22B.1.1.2310.006192
ORF1ab/nsp12261L261CtTAtGC22B.1.1.260.010471
ORF1ab/nsp12261L261GTTaGGa12B.1.1.280.000311
ORF1ab/nsp12261L261VTtAGtG12B.1.1.280.000311
ORF1ab/nsp12261L261GTTAGGG12B.1.1.280.000311
ORF1ab/nsp12261L261VTtaGta12B.1.1.280.000311
ORF1ab/nsp12261L261XtTatGa22B.1.1.2910.001485
ORF1ab/nsp12261L261FttAttT12B.1.1.2910.000742
ORF1ab/nsp12261L261FttAttC12B.1.1.2910.000742
ORF1ab/nsp12261L261CtTAtGC22B.1.1.3060.000877
ORF1ab/nsp12261L261CtTAtGC22B.1.1.3370.007194
ORF1ab/nsp12261L261XtTatGa22B.1.1.5070.017391
ORF1ab/nsp12261L261XtTatGa22B.1.1.620.054054
ORF1ab/nsp12261L261VTtaGta22B.1.1.70.000002
ORF1ab/nsp12261L261XtTatGa22B.1.1780.047619
ORF1ab/nsp12261L261CtTAtGC22B.1.1880.033333
ORF1ab/nsp12261L261ITtaAta22B.1.20.000018
ORF1ab/nsp12261L261CtTAtGC22B.1.2060.001631
ORF1ab/nsp12261L261CtTAtGC22B.1.3130.013158
ORF1ab/nsp12261L261CtTAtGC22B.1.3240.00321
ORF1ab/nsp12261L261CtTAtGC22B.1.3370.011173
ORF1ab/nsp12261L261XtTatGa22B.1.3710.002245
ORF1ab/nsp12261L261CtTAtGC22B.1.5740.004301
ORF1ab/nsp12261L261CtTAtGC22B.1.5940.0625
ORF1ab/nsp12261L261LttAttG22B.1.5960.000174
ORF1ab/nsp12261L261XtTatAa22B.1.617.20.000008
ORF1ab/nsp12261L261XtTatGa22C.90.060606
ORF1ab/nsp12261L261FttAttT110.055556
ORF1ab/nsp12261L261CtTAtGC11A.10.000282
ORF1ab/nsp12261L261StTatCa11A.2.50.000499
ORF1ab/nsp12261L261WtTAtGG11All0
ORF1ab/nsp12261L261LTtaCta11AY.1000.000046
ORF1ab/nsp12261L261LttAttG11AY.1020.000027
ORF1ab/nsp12261L261VTtaGta11AY.1100.000113
ORF1ab/nsp12261L261StTatCa11AY.1110.000183
ORF1ab/nsp12261L261StTatCa11AY.1190.000035
ORF1ab/nsp12261L261VTtaGta11AY.1190.000035
ORF1ab/nsp12261L261delTTA---11AY.1200.000037
ORF1ab/nsp12261L261PTTaCCa11AY.120.10.000321
ORF1ab/nsp12261L261LttAttG11AY.230.00007
ORF1ab/nsp12261L261del1ttAtt-11AY.250.000006
ORF1ab/nsp12261L261LTtaCta11AY.250.000006
ORF1ab/nsp12261L261VTtaGta11AY.260.000028
ORF1ab/nsp12261L261LttAttG11AY.270.000065
ORF1ab/nsp12261L261FttAttT11AY.290.000016
ORF1ab/nsp12261L261StTatCa11AY.30.00001
ORF1ab/nsp12261L261LTtaCta11AY.350.000233
ORF1ab/nsp12261L261VTtaGta11AY.370.000316
ORF1ab/nsp12261L261LTtaCta11AY.390.000025
ORF1ab/nsp12261L261StTatCa11AY.40.000002
ORF1ab/nsp12261L261VTtaGta11AY.40.000002
ORF1ab/nsp12261L261VTtaGta11AY.430.000004
ORF1ab/nsp12261L261FttAttT11AY.430.000004
ORF1ab/nsp12261L261LttAttG11AY.430.000004
ORF1ab/nsp12261L261StTatCa11AY.440.000006
ORF1ab/nsp12261L261VTtaGta11AY.46.10.001027
ORF1ab/nsp12261L261LttAttG11AY.470.000031
ORF1ab/nsp12261L261XtTatAa11AY.540.000095
ORF1ab/nsp12261L261delTTA---11AY.650.000533
ORF1ab/nsp12261L261delTTA---11AY.660.00107
ORF1ab/nsp12261L261LTtaCta11AY.690.000187
ORF1ab/nsp12261L261delTTA---11AY.80.000606
ORF1ab/nsp12261L261LttAttG11AY.9.20.000037
ORF1ab/nsp12261L261FttAttT11B.10.000009
ORF1ab/nsp12261L261delTTA---11B.1.10.000018
ORF1ab/nsp12261L261LttAttG11B.1.10.000018
ORF1ab/nsp12261L261delTTA---11B.1.1.10.000327
ORF1ab/nsp12261L261CtTAtGC11B.1.1.1280.007092
ORF1ab/nsp12261L261LttAttG11B.1.1.2200.001859
ORF1ab/nsp12261L261CtTAtGC11B.1.1.2220.000204
ORF1ab/nsp12261L261XtTatGa11B.1.1.2530.002506
ORF1ab/nsp12261L261XtTatGa11B.1.1.2540.011236
ORF1ab/nsp12261L261CtTAtGC11B.1.1.2580.003257
ORF1ab/nsp12261L261LttAttG11B.1.1.2610.008621
ORF1ab/nsp12261L261XtTatGa11B.1.1.2730.006757
ORF1ab/nsp12261L261WtTAtGG11B.1.1.280.000311
ORF1ab/nsp12261L261XtTatGa11B.1.1.280.000311
ORF1ab/nsp12261L261LttAttG11B.1.1.280.000311
ORF1ab/nsp12261L261ITtaAta11B.1.1.3170.000412
ORF1ab/nsp12261L261XtTatGa11B.1.1.4120.007634
ORF1ab/nsp12261L261StTatCa11B.1.1.5190.00004
ORF1ab/nsp12261L261CtTAtGC11B.1.1.610.008772
ORF1ab/nsp12261L261ITtaAta11B.1.1.70.000001
ORF1ab/nsp12261L261CtTAtGC11B.1.1.80.003584
ORF1ab/nsp12261L261StTatCa11B.1.1770.000013
ORF1ab/nsp12261L261FttAttT11B.1.177.830.001481
ORF1ab/nsp12261L261XtTatGa11B.1.20.000009
ORF1ab/nsp12261L261StTatCa11B.1.20.000009
ORF1ab/nsp12261L261PTTaCCa11B.1.2210.000071
ORF1ab/nsp12261L261del1Tta-ta11B.1.2340.000132
ORF1ab/nsp12261L261StTatCa11B.1.2400.000216
ORF1ab/nsp12261L261XtTatGa11B.1.2400.000216
ORF1ab/nsp12261L261ITtaAta11B.1.2430.00007
ORF1ab/nsp12261L261XtTatGa11B.1.2430.00007
ORF1ab/nsp12261L261FttAttT11B.1.2580.000067
ORF1ab/nsp12261L261CtTAtGC11B.1.3200.001245
ORF1ab/nsp12261L261CtTAtGC11B.1.3360.002439
ORF1ab/nsp12261L261StTatCa11B.1.3510.00003
ORF1ab/nsp12261L261VTtaGta11B.1.3510.00003
ORF1ab/nsp12261L261StTatCa11B.1.351.50.0006
ORF1ab/nsp12261L261FttAttC11B.1.3710.001122
ORF1ab/nsp12261L261CtTAtGC11B.1.4020.009804
ORF1ab/nsp12261L261StTatCa11B.1.4290.000024
ORF1ab/nsp12261L261LttAttG11B.1.4590.004082
ORF1ab/nsp12261L261StTatCa11B.1.466.20.000391
ORF1ab/nsp12261L261ITtaAta11B.1.5250.000113
ORF1ab/nsp12261L261delTTA---11B.1.5250.000113
ORF1ab/nsp12261L261LTtaCta11B.1.5260.000024
ORF1ab/nsp12261L261CtTAtGC11B.1.5650.00081
ORF1ab/nsp12261L261CtTAtGC11B.1.5760.000907
ORF1ab/nsp12261L261FttAttT11B.1.5880.00091
ORF1ab/nsp12261L261CtTAtGC11B.1.5950.000261
ORF1ab/nsp12261L261CtTAtGC11B.1.595.20.04
ORF1ab/nsp12261L261FttAttT11B.1.5990.00365
ORF1ab/nsp12261L261FttAttT11B.1.617.20.000004
ORF1ab/nsp12261L261ITtaAta11B.1.617.20.000004
ORF1ab/nsp12261L261LttAttG11B.1.6210.000089
ORF1ab/nsp12261L261LttAttG11B.1.6370.000073
ORF1ab/nsp12261L261XtTatGa11B.60.00091
ORF1ab/nsp12261L261delTTA---11C.170.055556
ORF1ab/nsp12261L261del1ttAtt-11C.360.000911
ORF1ab/nsp12261L261XtTatGa11C.60.037037
ORF1ab/nsp12261L261StTatCa11N.90.005952
ORF1ab/nsp12261L261LTtaCta11P.10.000016
ORF1ab/nsp12261L261LttAttG11P.1.170.000162
ORF1ab/nsp12261L261LTtaCta11P.20.000187
ORF1ab/nsp12261L261delTTA---11Q.80.000165