CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 260 | D260D | D4652D | syn | gaC | gaT | 13081 | 13081 | 1 | 14218-14220 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 13081 | 13081 | All | 0.002502 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 5755 | 5755 | Q.1 | 0.727009 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2030 | 2030 | B.1.1.7 | 0.001817 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 927 | 927 | B.1.1.333 | 0.997847 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 596 | 596 | AY.4 | 0.000928 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 401 | 401 | B.1.429 | 0.009435 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 298 | 298 | P.1 | 0.004695 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 293 | 293 | B.1.2 | 0.00258 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 198 | 198 | AY.25 | 0.001191 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 163 | 163 | AY.44 | 0.000992 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 143 | 143 | B.1 | 0.00131 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 129 | 129 | B.1.617.2 | 0.000486 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 121 | 121 | AY.3 | 0.001204 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 120 | 120 | B.1.1.519 | 0.004765 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 119 | 119 | AY.43 | 0.000527 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 118 | 118 | AY.119 | 0.004166 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 87 | 87 | AY.103 | 0.00054 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 80 | 80 | AY.47 | 0.002488 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 68 | 68 | AY.120 | 0.002528 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 51 | 51 | B.1.1 | 0.000925 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 50 | 50 | AY.75 | 0.002801 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 48 | 48 | B.1.177 | 0.000632 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 48 | 48 | B.1.351 | 0.001427 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 46 | 46 | AY.4.2 | 0.000998 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 45 | 45 | B.1.177.12 | 0.006826 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 45 | 45 | B.1.596 | 0.003921 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 44 | 44 | AY.42 | 0.00177 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 42 | 42 | B.1.526 | 0.000987 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 38 | 38 | B.1.36 | 0.005544 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 35 | 35 | AY.26 | 0.000991 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 34 | 34 | AY.39 | 0.00084 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 27 | 27 | B.1.311 | 0.007414 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 25 | 25 | B.1.1.222 | 0.0051 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 25 | 25 | B.1.160 | 0.00078 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 23 | 23 | B.1.427 | 0.001161 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 22 | 22 | AY.102 | 0.000583 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 21 | 21 | B.1.177.61 | 0.913043 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 20 | 20 | AY.9.2 | 0.000735 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 20 | 20 | B.1.525 | 0.002263 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 19 | 19 | AY.5 | 0.000392 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 19 | 19 | B.1.1.253 | 0.047619 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 17 | 17 | AY.29 | 0.000268 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 17 | 17 | B.1.258.17 | 0.001768 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 17 | 17 | P.1.1 | 0.0054 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 14 | 14 | P.1.10 | 0.003773 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 13 | 13 | AY.107 | 0.006058 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 13 | 13 | AY.39.1 | 0.000515 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 13 | 13 | B.1.258 | 0.000865 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 13 | 13 | B.1.617.1 | 0.001677 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 13 | 13 | B.1.637 | 0.00095 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 13 | 13 | P.1.14 | 0.000621 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 12 | 12 | AY.20 | 0.000466 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 12 | 12 | B.1.1.214 | 0.000665 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 11 | 11 | AY.12 | 0.003477 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 11 | 11 | AY.23 | 0.000767 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 11 | 11 | B.1.177.35 | 0.007602 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 10 | 10 | B.1.1.216 | 0.008905 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 10 | 10 | B.1.160.24 | 0.044248 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 10 | 10 | B.1.221 | 0.00071 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 10 | 10 | P.1.7 | 0.003193 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 9 | 9 | AY.33 | 0.000601 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 9 | 9 | AY.98.1 | 0.000436 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 9 | 9 | B.1.438.1 | 0.000965 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 8 | 8 | AY.61 | 0.000838 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 8 | 8 | B.1.346 | 0.010485 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 8 | 8 | B.1.621 | 0.000708 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 8 | 8 | P.1.12 | 0.003872 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 8 | 8 | Q.8 | 0.001319 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 7 | 7 | AY.117 | 0.000592 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 7 | 7 | AY.32 | 0.003727 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 7 | 7 | B.1.1.372 | 0.004821 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 7 | 7 | B.1.243 | 0.000487 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 7 | 7 | B.1.576 | 0.006346 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 6 | 6 | AY.37 | 0.001896 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 6 | 6 | AY.4.5 | 0.000645 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 6 | 6 | AY.54 | 0.000572 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 6 | 6 | AY.91 | 0.004383 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 5 | 5 | AY.105 | 0.003215 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 5 | 5 | AY.114 | 0.001156 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 5 | 5 | B.1.1.434 | 0.001743 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 5 | 5 | B.1.1.70 | 0.001705 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 5 | 5 | B.1.487 | 0.098039 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 5 | 5 | B.1.9.2 | 0.5 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 5 | 5 | P.1.15 | 0.001162 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 4 | 4 | AY.4.4 | 0.001637 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 4 | 4 | AY.46.1 | 0.004107 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 4 | 4 | B.1.1.298 | 0.003448 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 4 | 4 | B.1.1.377 | 0.005525 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 4 | 4 | B.1.177.86 | 0.000734 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 4 | 4 | B.3 | 0.003322 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 3 | 3 | A.23.1 | 0.002113 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 3 | 3 | AY.116.1 | 0.000934 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 3 | 3 | AY.35 | 0.000699 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 3 | 3 | AY.38 | 0.001498 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 3 | 3 | AY.65 | 0.001599 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 3 | 3 | AY.84 | 0.001312 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 3 | 3 | B.1.177.18 | 0.00348 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 3 | 3 | B.1.367 | 0.002377 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | AY.2 | 0.000712 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | AY.4.3 | 0.001684 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | AY.9.2.1 | 0.003953 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.1.1.101 | 0.02 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.1.1.389 | 0.012121 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.1.128 | 0.001271 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.1.177.52 | 0.003515 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.1.189 | 0.008584 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.1.291 | 0.038462 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.1.305 | 0.004301 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.1.459 | 0.008163 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.1.474 | 0.003802 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.1.587 | 0.003795 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.1.601 | 0.060606 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.1.619 | 0.001742 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.23 | 0.005848 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | C.30 | 0.003454 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.1.134 | 0.011364 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.1.31 | 0.066667 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.177.78 | 0.009709 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.318 | 0.038462 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.333 | 0.010526 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.579 | 0.011236 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.1.8 | 0.001972 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | U.1 | 0.012821 |
ORF1ab/nsp12 | 260 | D260D | gaC | gaT | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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