CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 260 & Codon = gaA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12260D260ED4652EnonsyngaCgaA135711340.83566714218-14220

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12260D260EgaCgaA11341357All0.000217
ORF1ab/nsp12260D260EgaCgaA9571173B.1.1.70.000857
ORF1ab/nsp12260D260EgaCgaA5858AY.9.10.004856
ORF1ab/nsp12260D260EgaCgaA3131AY.40.000048
ORF1ab/nsp12260D260EgaCgaA2323AY.4.50.002472
ORF1ab/nsp12260D260EgaCgaA99B.1.617.20.000034
ORF1ab/nsp12260D260EgaCgaA88AY.90.000541
ORF1ab/nsp12260D260EgaCgaA27AY.430.000009
ORF1ab/nsp12260D260EgaCgaA55R.10.00045
ORF1ab/nsp12260D260EgaCgaA44A.10.001127
ORF1ab/nsp12260D260EgaCgaA44AY.80.002424
ORF1ab/nsp12260D260EgaCgaA22AY.1200.000074
ORF1ab/nsp12260D260EgaCgaA12AY.30.00001
ORF1ab/nsp12260D260EgaCgaA22AY.580.001815
ORF1ab/nsp12260D260EgaCgaA22AY.630.000774
ORF1ab/nsp12260D260EgaCgaA22B.10.000018
ORF1ab/nsp12260D260EgaCgaA22B.1.1.330.000842
ORF1ab/nsp12260D260EgaCgaA22B.1.5610.000794
ORF1ab/nsp12260D260EgaCgaA110.055556
ORF1ab/nsp12260D260EgaCgaA11AY.1060.000335
ORF1ab/nsp12260D260EgaCgaA11AY.170.008197
ORF1ab/nsp12260D260EgaCgaA11AY.290.000016
ORF1ab/nsp12260D260EgaCgaA11AY.420.00004
ORF1ab/nsp12260D260EgaCgaA11AY.680.000274
ORF1ab/nsp12260D260EgaCgaA11AY.870.000833
ORF1ab/nsp12260D260EgaCgaA11AY.9.20.000037
ORF1ab/nsp12260D260EgaCgaA11AY.980.000079
ORF1ab/nsp12260D260EgaCgaA11AY.99.20.000092
ORF1ab/nsp12260D260EgaCgaA11B.1.10.000018
ORF1ab/nsp12260D260EgaCgaA11B.1.1.2220.000204
ORF1ab/nsp12260D260EgaCgaA11B.1.1110.001175
ORF1ab/nsp12260D260EgaCgaA11B.1.360.000146
ORF1ab/nsp12260D260EgaCgaA11B.1.4270.00005
ORF1ab/nsp12260D260EgaCgaA11B.1.5990.00365
ORF1ab/nsp12260D260EgaCgaA11B.1.6090.000479
ORF1ab/nsp12260D260EgaCgaA11C.350.000774
ORF1ab/nsp12260D260EgaCgaA11C.370.000116
ORF1ab/nsp12260D260EgaCgaA11P.10.000016

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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