CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 26 | T26I | T4418I | nonsyn | aCt | aTt | 10195 | 10193 | 0.999804 | 13516-13518 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 10193 | 10195 | All | 0.00195 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2673 | 2673 | B.1.1.7 | 0.002393 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1319 | 1319 | B.1.177.77 | 0.957879 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 475 | 475 | AY.4 | 0.000739 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 469 | 469 | AY.44 | 0.002855 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 399 | 399 | AY.29 | 0.006294 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 344 | 344 | B.1.221 | 0.024435 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 334 | 334 | B.1 | 0.003059 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 333 | 333 | AY.43 | 0.001475 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 264 | 264 | B.1.617.2 | 0.000994 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 253 | 253 | B.1.617.1 | 0.032628 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 216 | 216 | B.1.2 | 0.001902 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 206 | 206 | AY.103 | 0.001279 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 199 | 199 | AY.25 | 0.001197 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 174 | 174 | B.1.177 | 0.002291 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 161 | 161 | B.1.346 | 0.211009 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 131 | 131 | B.1.1.214 | 0.007265 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 125 | 125 | P.1 | 0.001969 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 105 | 105 | B.1.526 | 0.002468 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 99 | 99 | B.1.1 | 0.001796 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 95 | 95 | AY.39 | 0.002348 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 87 | 87 | AY.85 | 0.037164 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 74 | 74 | B.1.351.2 | 0.02239 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 70 | 70 | B.1.1.222 | 0.01428 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 54 | 54 | AY.26 | 0.001529 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 51 | 51 | Q.1 | 0.006443 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 48 | 48 | AY.3 | 0.000477 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 45 | 45 | B.1.160 | 0.001403 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 44 | 44 | B.1.351 | 0.001308 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 36 | 36 | AY.42 | 0.001448 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 33 | 33 | B.1.621 | 0.002921 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 30 | 30 | A.2.5.2 | 0.04717 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 29 | 29 | R.1 | 0.00261 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 28 | 28 | AY.6 | 0.001152 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 27 | 27 | AY.61 | 0.002829 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 27 | 27 | B.1.1.519 | 0.001072 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 27 | 27 | B.1.429 | 0.000635 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 25 | 25 | AY.9.2 | 0.000918 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 24 | 24 | AY.5 | 0.000496 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 24 | 24 | B.1.243 | 0.00167 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 23 | 23 | AY.20 | 0.000894 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 22 | 22 | AY.102 | 0.000583 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 22 | 22 | B.1.258 | 0.001464 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 21 | 21 | B.1.177.86 | 0.003853 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 20 | 20 | B.1.177.21 | 0.001529 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 19 | 19 | P.1.14 | 0.000908 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 17 | 17 | AY.29.1 | 0.003749 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 17 | 17 | AY.4.2 | 0.000369 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 17 | 17 | C.37 | 0.001973 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 16 | 16 | B.1.544 | 0.096386 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 16 | 16 | P.2 | 0.002986 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 15 | 15 | B.1.1.322 | 0.131579 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 15 | 15 | B.1.499 | 0.015756 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 15 | 15 | B.1.630 | 0.078534 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 14 | 14 | AY.118 | 0.000877 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 14 | 14 | AY.5.3 | 0.004723 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 14 | 14 | B.1.596 | 0.00122 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 11 | 13 | AY.120 | 0.000409 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 13 | 13 | B.1.1.25 | 0.007391 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 13 | 13 | B.1.177.75 | 0.013528 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 12 | 12 | AY.34 | 0.001164 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 12 | 12 | AY.59 | 0.006356 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 12 | 12 | B.1.1.216 | 0.010686 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 12 | 12 | B.1.1.284 | 0.001289 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 11 | 11 | AY.119 | 0.000388 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 11 | 11 | B.1.36.26 | 0.031429 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 11 | 11 | P.1.15 | 0.002556 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 10 | 10 | B | 0.001278 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 10 | 10 | B.1.409 | 0.007812 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 9 | 9 | AY.13 | 0.001449 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 9 | 9 | AY.33 | 0.000601 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 9 | 9 | AY.47 | 0.00028 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 9 | 9 | B.1.427 | 0.000454 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 8 | 8 | AY.45 | 0.000973 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 8 | 8 | B.1.177.7 | 0.001319 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 8 | 8 | B.1.349 | 0.005718 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 8 | 8 | B.1.614 | 1 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 7 | 7 | AY.27 | 0.000453 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 7 | 7 | AY.46.1 | 0.007187 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 7 | 7 | AY.7 | 0.001372 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 7 | 7 | AY.9.1 | 0.000586 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 7 | 7 | AY.99.2 | 0.000645 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 7 | 7 | B.1.369 | 0.001997 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 7 | 7 | P.1.4 | 0.006836 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 6 | 6 | AY.98 | 0.000474 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 6 | 6 | B.1.1.157 | 0.005479 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 6 | 6 | B.1.1.316 | 0.00555 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 6 | 6 | B.1.221.3 | 0.005 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 6 | 6 | B.1.609 | 0.002876 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 6 | 6 | B.1.637 | 0.000438 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 6 | 6 | C.36 | 0.005464 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 6 | 6 | Q.8 | 0.000989 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 5 | 5 | A.23.1 | 0.003521 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 5 | 5 | AY.68 | 0.001369 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 5 | 5 | AY.7.1 | 0.000564 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 5 | 5 | B.1.1.153 | 0.005476 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 5 | 5 | B.1.1.37 | 0.000964 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 5 | 5 | B.1.1.385 | 0.022321 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 5 | 5 | B.1.1.70 | 0.001705 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 5 | 5 | B.1.177.44 | 0.002595 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 5 | 5 | B.1.177.60 | 0.001092 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 5 | 5 | B.1.177.8 | 0.003762 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 5 | 5 | B.1.612 | 0.013263 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 4 | 4 | A.2.5 | 0.001996 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 4 | 4 | A.27 | 0.006623 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 4 | 4 | AY.111 | 0.000733 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 4 | 4 | AY.38 | 0.001997 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 4 | 4 | AY.58 | 0.00363 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 4 | 4 | AY.73 | 0.002661 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 4 | 4 | AY.84 | 0.00175 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 4 | 4 | B.1.1.254 | 0.044944 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 4 | 4 | B.1.1.372 | 0.002755 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 4 | 4 | B.1.1.375 | 0.047619 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 4 | 4 | B.1.177.69 | 0.005935 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 4 | 4 | B.1.222 | 0.006768 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 4 | 4 | B.1.393 | 0.114286 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 4 | 4 | B.1.438.1 | 0.000429 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 4 | 4 | B.1.478 | 0.047059 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 4 | 4 | B.1.561 | 0.001588 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 4 | 4 | C.36.3 | 0.002269 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 3 | 3 | B.1.1.220 | 0.005576 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 3 | 3 | B.1.1.417 | 0.008108 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 3 | 3 | B.1.177.46 | 0.002755 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 3 | 3 | B.1.258.11 | 0.001189 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 3 | 3 | B.1.258.5 | 0.026316 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 3 | 3 | B.1.428 | 0.003061 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | A | 0.000774 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | AY.72 | 0.002721 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.1.192 | 0.004619 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.1.370 | 0.025316 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.1.44 | 0.004819 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.1.448 | 0.004065 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.1.462 | 0.017241 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.160.16 | 0.001859 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.177.33 | 0.003289 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.177.45 | 0.000762 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.177.6 | 0.001953 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.236 | 0.004107 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.258.3 | 0.00335 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.258.7 | 0.003824 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.3 | 0.005236 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.36.36 | 0.001204 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.36.39 | 0.004435 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.403 | 0.006536 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.456 | 0.006536 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.564.1 | 0.003155 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.595.1 | 0.011696 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.600 | 0.011696 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.1.619.1 | 0.001283 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.35 | 0.015625 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | C.26 | 0.014706 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | C.35 | 0.001548 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | K.1 | 0.047619 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AE.4 | 0.043478 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AE.7 | 0.083333 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AM.4 | 0.003571 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AZ.4 | 0.003356 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | AZ.6 | 0.008403 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.123 | 0.017857 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.219 | 0.005 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.230 | 0.009174 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.31 | 0.066667 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.365 | 0.005587 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.1.90 | 0.1 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.160.12 | 0.00641 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.169 | 0.014925 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.177.2 | 0.004545 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.195 | 0.005025 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.293 | 0.0125 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.402 | 0.009804 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.498 | 0.020408 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.549 | 0.007194 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.9.4 | 0.006135 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.1.94 | 0.027027 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | L.1 | 0.001905 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | N.1 | 0.016949 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | U.3 | 0.003861 |
ORF1ab/nsp12 | 26 | T26I | aCt | aTt | 1 | 1 | Z.1 | 0.00289 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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