CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 254 & Codon = gaT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12254E254DE4646DnonsyngaGgaT533553310.9992514200-14202

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12254E254DgaGgaT53315335All0.00102
ORF1ab/nsp12254E254DgaGgaT45554555AD.20.997372
ORF1ab/nsp12254E254DgaGgaT240240AD.10.987654
ORF1ab/nsp12254E254DgaGgaT118119AY.1030.000733
ORF1ab/nsp12254E254DgaGgaT106106B.1.1.3150.898305
ORF1ab/nsp12254E254DgaGgaT3839B.1.1.70.000034
ORF1ab/nsp12254E254DgaGgaT2929B.10.000266
ORF1ab/nsp12254E254DgaGgaT2323AY.40.000036
ORF1ab/nsp12254E254DgaGgaT2222AD.2.11
ORF1ab/nsp12254E254DgaGgaT2222R.10.00198
ORF1ab/nsp12254E254DgaGgaT1717B.1.617.20.000064
ORF1ab/nsp12254E254DgaGgaT1313AY.430.000058
ORF1ab/nsp12254E254DgaGgaT1111B.1.10.0002
ORF1ab/nsp12254E254DgaGgaT99B.1.1.2530.022556
ORF1ab/nsp12254E254DgaGgaT99B.1.1770.000119
ORF1ab/nsp12254E254DgaGgaT66AY.140.000528
ORF1ab/nsp12254E254DgaGgaT66AY.30.00006
ORF1ab/nsp12254E254DgaGgaT55B.1.20.000044
ORF1ab/nsp12254E254DgaGgaT55C.370.00058
ORF1ab/nsp12254E254DgaGgaT55Q.40.002274
ORF1ab/nsp12254E254DgaGgaT44AY.1000.000184
ORF1ab/nsp12254E254DgaGgaT44B.1.2580.000266
ORF1ab/nsp12254E254DgaGgaT44B.1.4290.000094
ORF1ab/nsp12254E254DgaGgaT33AY.1190.000106
ORF1ab/nsp12254E254DgaGgaT33AY.330.0002
ORF1ab/nsp12254E254DgaGgaT33AY.390.000074
ORF1ab/nsp12254E254DgaGgaT33AY.540.000286
ORF1ab/nsp12254E254DgaGgaT33B.1.4000.001287
ORF1ab/nsp12254E254DgaGgaT22AY.20.000712
ORF1ab/nsp12254E254DgaGgaT22AY.250.000012
ORF1ab/nsp12254E254DgaGgaT22AY.4.20.000043
ORF1ab/nsp12254E254DgaGgaT22B.1.1.250.001137
ORF1ab/nsp12254E254DgaGgaT22B.1.1.2580.006515
ORF1ab/nsp12254E254DgaGgaT22B.1.1.3010.002358
ORF1ab/nsp12254E254DgaGgaT22B.1.1600.000062
ORF1ab/nsp12254E254DgaGgaT22B.1.3510.000059
ORF1ab/nsp12254E254DgaGgaT22B.1.4110.007407
ORF1ab/nsp12254E254DgaGgaT22B.1.5250.000226
ORF1ab/nsp12254E254DgaGgaT22B.1.5960.000174
ORF1ab/nsp12254E254DgaGgaT22B.1.6280.000705
ORF1ab/nsp12254E254DgaGgaT22P.10.000032
ORF1ab/nsp12254E254DgaGgaT11AP.10.001502
ORF1ab/nsp12254E254DgaGgaT11AT.10.005128
ORF1ab/nsp12254E254DgaGgaT11AY.1010.00049
ORF1ab/nsp12254E254DgaGgaT11AY.1020.000027
ORF1ab/nsp12254E254DgaGgaT11AY.1050.000643
ORF1ab/nsp12254E254DgaGgaT11AY.1170.000085
ORF1ab/nsp12254E254DgaGgaT11AY.1180.000063
ORF1ab/nsp12254E254DgaGgaT11AY.1210.000135
ORF1ab/nsp12254E254DgaGgaT11AY.290.000016
ORF1ab/nsp12254E254DgaGgaT11AY.4.50.000107
ORF1ab/nsp12254E254DgaGgaT11AY.470.000031
ORF1ab/nsp12254E254DgaGgaT11AY.50.000021
ORF1ab/nsp12254E254DgaGgaT11AY.530.000288
ORF1ab/nsp12254E254DgaGgaT11AY.60.000041
ORF1ab/nsp12254E254DgaGgaT11AY.750.000056
ORF1ab/nsp12254E254DgaGgaT11B0.000128
ORF1ab/nsp12254E254DgaGgaT11B.1.1.1410.002012
ORF1ab/nsp12254E254DgaGgaT11B.1.1.2160.00089
ORF1ab/nsp12254E254DgaGgaT11B.1.1.270.00565
ORF1ab/nsp12254E254DgaGgaT11B.1.1.3690.000446
ORF1ab/nsp12254E254DgaGgaT11B.1.1.4090.002833
ORF1ab/nsp12254E254DgaGgaT11B.1.1150.021739
ORF1ab/nsp12254E254DgaGgaT11B.1.177.820.000477
ORF1ab/nsp12254E254DgaGgaT11B.1.2210.000071
ORF1ab/nsp12254E254DgaGgaT11B.1.2380.014925
ORF1ab/nsp12254E254DgaGgaT11B.1.2400.000216
ORF1ab/nsp12254E254DgaGgaT11B.1.360.000146
ORF1ab/nsp12254E254DgaGgaT11B.1.36.170.000494
ORF1ab/nsp12254E254DgaGgaT11B.1.3890.001002
ORF1ab/nsp12254E254DgaGgaT11B.1.4130.004255
ORF1ab/nsp12254E254DgaGgaT11B.1.4160.001269
ORF1ab/nsp12254E254DgaGgaT11B.1.4270.00005
ORF1ab/nsp12254E254DgaGgaT11B.1.4520.013699
ORF1ab/nsp12254E254DgaGgaT11B.1.4990.00105
ORF1ab/nsp12254E254DgaGgaT11B.1.617.10.000129
ORF1ab/nsp12254E254DgaGgaT11B.230.002924
ORF1ab/nsp12254E254DgaGgaT11C.10.002392
ORF1ab/nsp12254E254DgaGgaT11C.160.00106
ORF1ab/nsp12254E254DgaGgaT11D.20.000075

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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