CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 254 | E254D | E4646D | nonsyn | gaG | gaT | 5335 | 5331 | 0.99925 | 14200-14202 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 5331 | 5335 | All | 0.00102 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 4555 | 4555 | AD.2 | 0.997372 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 240 | 240 | AD.1 | 0.987654 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 118 | 119 | AY.103 | 0.000733 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 106 | 106 | B.1.1.315 | 0.898305 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 38 | 39 | B.1.1.7 | 0.000034 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 29 | 29 | B.1 | 0.000266 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 23 | 23 | AY.4 | 0.000036 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 22 | 22 | AD.2.1 | 1 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 22 | 22 | R.1 | 0.00198 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 17 | 17 | B.1.617.2 | 0.000064 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 13 | 13 | AY.43 | 0.000058 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 11 | 11 | B.1.1 | 0.0002 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 9 | 9 | B.1.1.253 | 0.022556 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 9 | 9 | B.1.177 | 0.000119 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 6 | 6 | AY.14 | 0.000528 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 5 | 5 | Q.4 | 0.002274 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 3 | 3 | B.1.400 | 0.001287 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 2 | 2 | AY.2 | 0.000712 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 2 | 2 | B.1.1.258 | 0.006515 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 2 | 2 | B.1.1.301 | 0.002358 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 2 | 2 | B.1.411 | 0.007407 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | B.1.115 | 0.021739 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | B.1.238 | 0.014925 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | B.1.413 | 0.004255 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | B.1.452 | 0.013699 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp12 | 254 | E254D | gaG | gaT | 1 | 1 | D.2 | 0.000075 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|