CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 254

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12254E254DE4646DnonsyngaGgaT533553310.9992514200-14202
ORF1ab/nsp12254E254DE4646DnonsyngaGgaC533540.00074976614200-14202
ORF1ab/nsp12254E254EE4646EsyngaGgaA683683114200-14202
ORF1ab/nsp12254E254GE4646GnonsyngAggGg18120.66666714200-14202
ORF1ab/nsp12254E254GE4646GnonsyngAGgGT1850.27777814200-14202
ORF1ab/nsp12254E254GE4646GnonsyngAGgGA1810.055555614200-14202
ORF1ab/nsp12254E254delE4646deldelGAG---1616114200-14202
ORF1ab/nsp12254E254KE4646KnonsynGagAag1090.914200-14202
ORF1ab/nsp12254E254KE4646KnonsynGaGAaA1010.114200-14202
ORF1ab/nsp12254E254XE4646XnonsynGagTag99114200-14202
ORF1ab/nsp12254E254QE4646QnonsynGagCag44114200-14202
ORF1ab/nsp12254E254VE4646VnonsyngAggTg33114200-14202
ORF1ab/nsp12254E254RE4646RnonsynGAGAGA210.514200-14202
ORF1ab/nsp12254E254RE4646RnonsynGAgAGg210.514200-14202
ORF1ab/nsp12254E254del1E4646del1delGag-ag11114200-14202
ORF1ab/nsp12254E254AE4646AnonsyngAggCg11114200-14202

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12254E254DgaGgaT53315335All0.00102
ORF1ab/nsp12254E254DgaGgaC45335All0.000001
ORF1ab/nsp12254E254DgaGgaT45554555AD.20.997372
ORF1ab/nsp12254E254EgaGgaA683683All0.000131
ORF1ab/nsp12254E254EgaGgaA295295B.1.1.70.000264
ORF1ab/nsp12254E254DgaGgaT240240AD.10.987654
ORF1ab/nsp12254E254DgaGgaT118119AY.1030.000733
ORF1ab/nsp12254E254DgaGgaC1119AY.1030.000006
ORF1ab/nsp12254E254EgaGgaA119119B.1.1770.001567
ORF1ab/nsp12254E254DgaGgaT106106B.1.1.3150.898305
ORF1ab/nsp12254E254EgaGgaA7979AY.440.000481
ORF1ab/nsp12254E254DgaGgaT3839B.1.1.70.000034
ORF1ab/nsp12254E254DgaGgaC139B.1.1.70.000001
ORF1ab/nsp12254E254DgaGgaT2929B.10.000266
ORF1ab/nsp12254E254EgaGgaA2525AY.1030.000155
ORF1ab/nsp12254E254EgaGgaA2424B.1.1600.000749
ORF1ab/nsp12254E254DgaGgaT2323AY.40.000036
ORF1ab/nsp12254E254DgaGgaT2222AD.2.11
ORF1ab/nsp12254E254DgaGgaT2222R.10.00198
ORF1ab/nsp12254E254EgaGgaA1919AY.260.000538
ORF1ab/nsp12254E254GgAggGg1218All0.000002
ORF1ab/nsp12254E254GgAGgGT518All0.000001
ORF1ab/nsp12254E254GgAGgGA118All0
ORF1ab/nsp12254E254DgaGgaT1717B.1.617.20.000064
ORF1ab/nsp12254E254delGAG---1616All0.000003
ORF1ab/nsp12254E254EgaGgaA1414B.1.2430.000974
ORF1ab/nsp12254E254DgaGgaT1313AY.430.000058
ORF1ab/nsp12254E254DgaGgaT1111B.1.10.0002
ORF1ab/nsp12254E254KGagAag910All0.000002
ORF1ab/nsp12254E254KGaGAaA110All0
ORF1ab/nsp12254E254XGagTag99All0.000002
ORF1ab/nsp12254E254EgaGgaA99AY.40.000014
ORF1ab/nsp12254E254DgaGgaT99B.1.1.2530.022556
ORF1ab/nsp12254E254DgaGgaT99B.1.1770.000119
ORF1ab/nsp12254E254EgaGgaA88AY.120.2.10.003986
ORF1ab/nsp12254E254EgaGgaA77AY.30.00007
ORF1ab/nsp12254E254EgaGgaA77B.1.4270.000353
ORF1ab/nsp12254E254DgaGgaT66AY.140.000528
ORF1ab/nsp12254E254DgaGgaT66AY.30.00006
ORF1ab/nsp12254E254EgaGgaA66AY.4.40.002455
ORF1ab/nsp12254E254EgaGgaA66AY.46.60.000433
ORF1ab/nsp12254E254GgAggGg46B.10.000037
ORF1ab/nsp12254E254GgAGgGT26B.10.000018
ORF1ab/nsp12254E254delGAG---66B.1.1.70.000005
ORF1ab/nsp12254E254DgaGgaT55B.1.20.000044
ORF1ab/nsp12254E254EgaGgaA55B.1.617.20.000019
ORF1ab/nsp12254E254DgaGgaT55C.370.00058
ORF1ab/nsp12254E254DgaGgaT55Q.40.002274
ORF1ab/nsp12254E254QGagCag44All0.000001
ORF1ab/nsp12254E254DgaGgaT44AY.1000.000184
ORF1ab/nsp12254E254EgaGgaA44B.10.000037
ORF1ab/nsp12254E254EgaGgaA44B.1.20.000035
ORF1ab/nsp12254E254DgaGgaT44B.1.2580.000266
ORF1ab/nsp12254E254EgaGgaA44B.1.2650.005083
ORF1ab/nsp12254E254DgaGgaT44B.1.4290.000094
ORF1ab/nsp12254E254KGagAag230.111111
ORF1ab/nsp12254E254KGaGAaA130.055556
ORF1ab/nsp12254E254VgAggTg33All0.000001
ORF1ab/nsp12254E254DgaGgaT33AY.1190.000106
ORF1ab/nsp12254E254EgaGgaA33AY.1190.000106
ORF1ab/nsp12254E254EgaGgaA33AY.290.000047
ORF1ab/nsp12254E254DgaGgaT33AY.330.0002
ORF1ab/nsp12254E254EgaGgaA33AY.350.000699
ORF1ab/nsp12254E254DgaGgaT33AY.390.000074
ORF1ab/nsp12254E254DgaGgaT33AY.540.000286
ORF1ab/nsp12254E254DgaGgaT33B.1.4000.001287
ORF1ab/nsp12254E254EgaGgaA33Q.80.000495
ORF1ab/nsp12254E254RGAGAGA120.055556
ORF1ab/nsp12254E254RGAgAGg120.055556
ORF1ab/nsp12254E254GgAGgGA120.055556
ORF1ab/nsp12254E254GgAggGg120.055556
ORF1ab/nsp12254E254RGAGAGA12All0
ORF1ab/nsp12254E254RGAgAGg12All0
ORF1ab/nsp12254E254DgaGgaT22AY.20.000712
ORF1ab/nsp12254E254DgaGgaT22AY.250.000012
ORF1ab/nsp12254E254KGagAag22AY.30.00002
ORF1ab/nsp12254E254DgaGgaT22AY.4.20.000043
ORF1ab/nsp12254E254EgaGgaA22AY.430.000009
ORF1ab/nsp12254E254EgaGgaA22AY.750.000112
ORF1ab/nsp12254E254EgaGgaA22AY.90.000135
ORF1ab/nsp12254E254XGagTag22B.10.000018
ORF1ab/nsp12254E254DgaGgaT22B.1.1.250.001137
ORF1ab/nsp12254E254DgaGgaT22B.1.1.2580.006515
ORF1ab/nsp12254E254DgaGgaT22B.1.1.3010.002358
ORF1ab/nsp12254E254EgaGgaA22B.1.1.5190.000079
ORF1ab/nsp12254E254XGagTag22B.1.1.70.000002
ORF1ab/nsp12254E254GgAGgGT22B.1.1.70.000002
ORF1ab/nsp12254E254DgaGgaT22B.1.1600.000062
ORF1ab/nsp12254E254EgaGgaA22B.1.2400.000431
ORF1ab/nsp12254E254DgaGgaT22B.1.3510.000059
ORF1ab/nsp12254E254GgAggGg22B.1.360.000292
ORF1ab/nsp12254E254DgaGgaT22B.1.4110.007407
ORF1ab/nsp12254E254DgaGgaT22B.1.5250.000226
ORF1ab/nsp12254E254DgaGgaT22B.1.5960.000174
ORF1ab/nsp12254E254DgaGgaT22B.1.6280.000705
ORF1ab/nsp12254E254DgaGgaT22P.10.000032
ORF1ab/nsp12254E254EgaGgaA22P.1.40.001953
ORF1ab/nsp12254E254EgaGgaA110.055556
ORF1ab/nsp12254E254VgAggTg11A.2.20.001689
ORF1ab/nsp12254E254del1Gag-ag11All0
ORF1ab/nsp12254E254AgAggCg11All0
ORF1ab/nsp12254E254DgaGgaT11AP.10.001502
ORF1ab/nsp12254E254DgaGgaT11AT.10.005128
ORF1ab/nsp12254E254EgaGgaA11AY.1000.000046
ORF1ab/nsp12254E254DgaGgaT11AY.1010.00049
ORF1ab/nsp12254E254DgaGgaT11AY.1020.000027
ORF1ab/nsp12254E254DgaGgaT11AY.1050.000643
ORF1ab/nsp12254E254EgaGgaA11AY.1130.000142
ORF1ab/nsp12254E254DgaGgaT11AY.1170.000085
ORF1ab/nsp12254E254DgaGgaT11AY.1180.000063
ORF1ab/nsp12254E254delGAG---11AY.1200.000037
ORF1ab/nsp12254E254DgaGgaT11AY.1210.000135
ORF1ab/nsp12254E254EgaGgaA11AY.16.10.00047
ORF1ab/nsp12254E254EgaGgaA11AY.200.000039
ORF1ab/nsp12254E254EgaGgaA11AY.230.00007
ORF1ab/nsp12254E254EgaGgaA11AY.250.000006
ORF1ab/nsp12254E254DgaGgaT11AY.290.000016
ORF1ab/nsp12254E254delGAG---11AY.330.000067
ORF1ab/nsp12254E254EgaGgaA11AY.360.000148
ORF1ab/nsp12254E254KGagAag11AY.390.000025
ORF1ab/nsp12254E254delGAG---11AY.390.000025
ORF1ab/nsp12254E254EgaGgaA11AY.390.000025
ORF1ab/nsp12254E254EgaGgaA11AY.39.10.00004
ORF1ab/nsp12254E254delGAG---11AY.40.000002
ORF1ab/nsp12254E254DgaGgaT11AY.4.50.000107
ORF1ab/nsp12254E254XGagTag11AY.430.000004
ORF1ab/nsp12254E254EgaGgaA11AY.460.000104
ORF1ab/nsp12254E254DgaGgaT11AY.470.000031
ORF1ab/nsp12254E254DgaGgaT11AY.50.000021
ORF1ab/nsp12254E254DgaGgaT11AY.530.000288
ORF1ab/nsp12254E254VgAggTg11AY.590.00053
ORF1ab/nsp12254E254DgaGgaT11AY.60.000041
ORF1ab/nsp12254E254delGAG---11AY.650.000533
ORF1ab/nsp12254E254DgaGgaT11AY.750.000056
ORF1ab/nsp12254E254delGAG---11AY.80.000606
ORF1ab/nsp12254E254KGagAag11AY.960.002075
ORF1ab/nsp12254E254DgaGgaT11B0.000128
ORF1ab/nsp12254E254XGagTag11B0.000128
ORF1ab/nsp12254E254KGagAag11B.10.000009
ORF1ab/nsp12254E254QGagCag11B.10.000009
ORF1ab/nsp12254E254VgAggTg11B.10.000009
ORF1ab/nsp12254E254AgAggCg11B.1.10.000018
ORF1ab/nsp12254E254delGAG---11B.1.10.000018
ORF1ab/nsp12254E254EgaGgaA11B.1.10.000018
ORF1ab/nsp12254E254delGAG---11B.1.1.10.000327
ORF1ab/nsp12254E254DgaGgaT11B.1.1.1410.002012
ORF1ab/nsp12254E254EgaGgaA11B.1.1.2140.000055
ORF1ab/nsp12254E254DgaGgaT11B.1.1.2160.00089
ORF1ab/nsp12254E254GgAggGg11B.1.1.2320.001815
ORF1ab/nsp12254E254DgaGgaT11B.1.1.270.00565
ORF1ab/nsp12254E254GgAggGg11B.1.1.2820.011628
ORF1ab/nsp12254E254GgAGgGT11B.1.1.3150.008475
ORF1ab/nsp12254E254GgAggGg11B.1.1.3260.001761
ORF1ab/nsp12254E254EgaGgaA11B.1.1.3480.000796
ORF1ab/nsp12254E254DgaGgaT11B.1.1.3690.000446
ORF1ab/nsp12254E254DgaGgaC11B.1.1.390.00051
ORF1ab/nsp12254E254DgaGgaT11B.1.1.4090.002833
ORF1ab/nsp12254E254EgaGgaA11B.1.1.5230.001563
ORF1ab/nsp12254E254DgaGgaT11B.1.1150.021739
ORF1ab/nsp12254E254del1Gag-ag11B.1.1600.000031
ORF1ab/nsp12254E254KGagAag11B.1.1600.000031
ORF1ab/nsp12254E254DgaGgaC11B.1.160.160.000929
ORF1ab/nsp12254E254EgaGgaA11B.1.177.120.000152
ORF1ab/nsp12254E254DgaGgaT11B.1.177.820.000477
ORF1ab/nsp12254E254QGagCag11B.1.20.000009
ORF1ab/nsp12254E254delGAG---11B.1.20.000009
ORF1ab/nsp12254E254EgaGgaA11B.1.2210.000071
ORF1ab/nsp12254E254DgaGgaT11B.1.2210.000071
ORF1ab/nsp12254E254DgaGgaT11B.1.2380.014925
ORF1ab/nsp12254E254DgaGgaT11B.1.2400.000216
ORF1ab/nsp12254E254XGagTag11B.1.2840.013158
ORF1ab/nsp12254E254DgaGgaT11B.1.360.000146
ORF1ab/nsp12254E254DgaGgaT11B.1.36.170.000494
ORF1ab/nsp12254E254GgAggGg11B.1.36.180.00042
ORF1ab/nsp12254E254GgAggGg11B.1.36.350.002604
ORF1ab/nsp12254E254DgaGgaT11B.1.3890.001002
ORF1ab/nsp12254E254DgaGgaT11B.1.4130.004255
ORF1ab/nsp12254E254DgaGgaT11B.1.4160.001269
ORF1ab/nsp12254E254DgaGgaT11B.1.4270.00005
ORF1ab/nsp12254E254DgaGgaT11B.1.4520.013699
ORF1ab/nsp12254E254EgaGgaA11B.1.4590.004082
ORF1ab/nsp12254E254DgaGgaT11B.1.4990.00105
ORF1ab/nsp12254E254delGAG---11B.1.5250.000113
ORF1ab/nsp12254E254EgaGgaA11B.1.5510.00129
ORF1ab/nsp12254E254EgaGgaA11B.1.5960.000087
ORF1ab/nsp12254E254DgaGgaT11B.1.617.10.000129
ORF1ab/nsp12254E254XGagTag11B.1.617.20.000004
ORF1ab/nsp12254E254EgaGgaA11B.1.6180.004032
ORF1ab/nsp12254E254QGagCag11B.1.6370.000073
ORF1ab/nsp12254E254DgaGgaT11B.230.002924
ORF1ab/nsp12254E254DgaGgaT11C.10.002392
ORF1ab/nsp12254E254DgaGgaT11C.160.00106
ORF1ab/nsp12254E254EgaGgaA11C.320.023256
ORF1ab/nsp12254E254QGagCag11D.20.000075
ORF1ab/nsp12254E254XGagTag11D.20.000075
ORF1ab/nsp12254E254DgaGgaT11D.20.000075
ORF1ab/nsp12254E254KGagAag11P.1.10.000318
ORF1ab/nsp12254E254EgaGgaA11P.1.140.000048
ORF1ab/nsp12254E254EgaGgaA11P.20.000187