CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 253

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12253A253AA4645AsyngcAgcG5284570.8655314197-14199
ORF1ab/nsp12253A253AA4645AsyngcAgcT528570.10795514197-14199
ORF1ab/nsp12253A253AA4645AsyngcAgcC528140.026515214197-14199
ORF1ab/nsp12253A253SA4645SnonsynGcaTca156156114197-14199
ORF1ab/nsp12253A253VA4645VnonsyngCagTa82770.93902414197-14199
ORF1ab/nsp12253A253VA4645VnonsyngCAgTT8240.048780514197-14199
ORF1ab/nsp12253A253VA4645VnonsyngCAgTG8210.012195114197-14199
ORF1ab/nsp12253A253TA4645TnonsynGcaAca24230.95833314197-14199
ORF1ab/nsp12253A253TA4645TnonsynGcAAcG2410.041666714197-14199
ORF1ab/nsp12253A253delA4645deldelGCA---1616114197-14199
ORF1ab/nsp12253A253PA4645PnonsynGcaCca760.85714314197-14199
ORF1ab/nsp12253A253PA4645PnonsynGcACcG710.14285714197-14199
ORF1ab/nsp12253A253EA4645EnonsyngCagAa540.814197-14199
ORF1ab/nsp12253A253EA4645EnonsyngCAgAG510.214197-14199
ORF1ab/nsp12253A253del1A4645del1delgcAgc-420.514197-14199
ORF1ab/nsp12253A253del1A4645del1delgCag-a410.2514197-14199
ORF1ab/nsp12253A253del1A4645del1delGca-ca410.2514197-14199
ORF1ab/nsp12253A253GA4645GnonsyngCagGa33114197-14199
ORF1ab/nsp12253A253LA4645LnonsynGCaCTa210.514197-14199
ORF1ab/nsp12253A253QA4645QnonsynGCACAG210.514197-14199
ORF1ab/nsp12253A253QA4645QnonsynGCaCAa210.514197-14199
ORF1ab/nsp12253A253LA4645LnonsynGCACTG210.514197-14199

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12253A253AgcAgcG457528All0.000087
ORF1ab/nsp12253A253AgcAgcT57528All0.000011
ORF1ab/nsp12253A253AgcAgcC14528All0.000003
ORF1ab/nsp12253A253SGcaTca156156All0.00003
ORF1ab/nsp12253A253AgcAgcG133144B.1.1.70.000119
ORF1ab/nsp12253A253AgcAgcT7144B.1.1.70.000006
ORF1ab/nsp12253A253AgcAgcC4144B.1.1.70.000004
ORF1ab/nsp12253A253AgcAgcG127130B.1.20.001118
ORF1ab/nsp12253A253AgcAgcC2130B.1.20.000018
ORF1ab/nsp12253A253AgcAgcT1130B.1.20.000009
ORF1ab/nsp12253A253VgCagTa7782All0.000015
ORF1ab/nsp12253A253VgCAgTT482All0.000001
ORF1ab/nsp12253A253VgCAgTG182All0
ORF1ab/nsp12253A253SGcaTca6060D.20.004502
ORF1ab/nsp12253A253AgcAgcG4848B.1.1.4320.060759
ORF1ab/nsp12253A253AgcAgcG2531B.10.000229
ORF1ab/nsp12253A253AgcAgcT531B.10.000046
ORF1ab/nsp12253A253AgcAgcC131B.10.000009
ORF1ab/nsp12253A253SGcaTca2626AY.250.000156
ORF1ab/nsp12253A253TGcaAca2324All0.000004
ORF1ab/nsp12253A253TGcAAcG124All0
ORF1ab/nsp12253A253AgcAgcG1323AY.30.000129
ORF1ab/nsp12253A253AgcAgcT1023AY.30.000099
ORF1ab/nsp12253A253delGCA---1616All0.000003
ORF1ab/nsp12253A253VgCagTa1616AY.40.000025
ORF1ab/nsp12253A253AgcAgcG1515B.1.360.002189
ORF1ab/nsp12253A253AgcAgcG1414B.1.5820.006869
ORF1ab/nsp12253A253AgcAgcT913AY.40.000014
ORF1ab/nsp12253A253AgcAgcG413AY.40.000006
ORF1ab/nsp12253A253AgcAgcG1011B.1.617.20.000038
ORF1ab/nsp12253A253AgcAgcT111B.1.617.20.000004
ORF1ab/nsp12253A253SGcaTca1010P.1.70.003193
ORF1ab/nsp12253A253SGcaTca99B.10.000082
ORF1ab/nsp12253A253VgCagTa88B.1.1.70.000007
ORF1ab/nsp12253A253PGcaCca67All0.000001
ORF1ab/nsp12253A253PGcACcG17All0
ORF1ab/nsp12253A253VgCagTa77B.10.000064
ORF1ab/nsp12253A253SGcaTca77B.1.10.000127
ORF1ab/nsp12253A253AgcAgcG77B.1.1770.000092
ORF1ab/nsp12253A253AgcAgcT77B.1.350.11
ORF1ab/nsp12253A253TGcaAca66AY.40.000009
ORF1ab/nsp12253A253AgcAgcG36AY.440.000018
ORF1ab/nsp12253A253AgcAgcC26AY.440.000012
ORF1ab/nsp12253A253AgcAgcT16AY.440.000006
ORF1ab/nsp12253A253delGCA---66B.1.1.70.000005
ORF1ab/nsp12253A253SGcaTca66B.1.1.70.000005
ORF1ab/nsp12253A253AgcAgcT36P.10.000047
ORF1ab/nsp12253A253AgcAgcG36P.10.000047
ORF1ab/nsp12253A253EgCagAa45All0.000001
ORF1ab/nsp12253A253EgCAgAG15All0
ORF1ab/nsp12253A253AgcAgcT35AY.250.000018
ORF1ab/nsp12253A253AgcAgcC25AY.250.000012
ORF1ab/nsp12253A253AgcAgcG55AY.300.001979
ORF1ab/nsp12253A253del1gcAgc-24All0
ORF1ab/nsp12253A253del1Gca-ca14All0
ORF1ab/nsp12253A253del1gCag-a14All0
ORF1ab/nsp12253A253SGcaTca44AY.40.000006
ORF1ab/nsp12253A253AgcAgcG44B.1.160.170.006803
ORF1ab/nsp12253A253VgCagTa44B.1.617.20.000015
ORF1ab/nsp12253A253VgCagTa44B.400.001457
ORF1ab/nsp12253A253VgCagTa33A0.001161
ORF1ab/nsp12253A253TGcaAca33A.10.000846
ORF1ab/nsp12253A253AgcAgcG33A.10.000846
ORF1ab/nsp12253A253VgCagTa33A.250.054545
ORF1ab/nsp12253A253GgCagGa33All0.000001
ORF1ab/nsp12253A253AgcAgcG33AY.1030.000019
ORF1ab/nsp12253A253VgCAgTT23AY.30.00002
ORF1ab/nsp12253A253VgCagTa13AY.30.00001
ORF1ab/nsp12253A253AgcAgcT33B.1.1.5190.000119
ORF1ab/nsp12253A253TGcaAca33B.1.1.70.000003
ORF1ab/nsp12253A253AgcAgcG33B.1.3370.01676
ORF1ab/nsp12253A253VgCagTa33B.1.5960.000261
ORF1ab/nsp12253A253TGcaAca33B.1.617.20.000011
ORF1ab/nsp12253A253PGcaCca120.055556
ORF1ab/nsp12253A253LGCACTG120.055556
ORF1ab/nsp12253A253VgCAgTG120.055556
ORF1ab/nsp12253A253LGCaCTa120.055556
ORF1ab/nsp12253A253EgCagAa120.055556
ORF1ab/nsp12253A253PGcACcG120.055556
ORF1ab/nsp12253A253QGCACAG120.055556
ORF1ab/nsp12253A253EgCAgAG120.055556
ORF1ab/nsp12253A253VgCagTa120.055556
ORF1ab/nsp12253A253QGCaCAa120.055556
ORF1ab/nsp12253A253SGcaTca22A.20.001324
ORF1ab/nsp12253A253QGCACAG12All0
ORF1ab/nsp12253A253LGCaCTa12All0
ORF1ab/nsp12253A253LGCACTG12All0
ORF1ab/nsp12253A253QGCaCAa12All0
ORF1ab/nsp12253A253AgcAgcG22AY.1000.000092
ORF1ab/nsp12253A253SGcaTca22AY.1020.000053
ORF1ab/nsp12253A253VgCagTa22AY.1190.000071
ORF1ab/nsp12253A253AgcAgcG12AY.1190.000035
ORF1ab/nsp12253A253AgcAgcT12AY.1190.000035
ORF1ab/nsp12253A253GgCagGa22AY.1200.000074
ORF1ab/nsp12253A253AgcAgcG22AY.230.000139
ORF1ab/nsp12253A253SGcaTca22AY.290.000032
ORF1ab/nsp12253A253SGcaTca22AY.420.00008
ORF1ab/nsp12253A253AgcAgcG22AY.450.000243
ORF1ab/nsp12253A253AgcAgcG22B.1.1600.000062
ORF1ab/nsp12253A253SGcaTca22B.1.1770.000026
ORF1ab/nsp12253A253VgCagTa22B.1.1770.000026
ORF1ab/nsp12253A253VgCagTa22B.1.20.000018
ORF1ab/nsp12253A253delGCA---22B.1.20.000018
ORF1ab/nsp12253A253AgcAgcT22B.1.2210.000142
ORF1ab/nsp12253A253SGcaTca22B.1.2340.000264
ORF1ab/nsp12253A253SGcaTca22B.1.4270.000101
ORF1ab/nsp12253A253AgcAgcG22B.1.4290.000047
ORF1ab/nsp12253A253VgCagTa22B.1.4290.000047
ORF1ab/nsp12253A253SGcaTca22B.1.617.20.000008
ORF1ab/nsp12253A253AgcAgcG110.055556
ORF1ab/nsp12253A253TGcaAca11A0.000387
ORF1ab/nsp12253A253AgcAgcG11AY.1020.000027
ORF1ab/nsp12253A253VgCagTa11AY.1020.000027
ORF1ab/nsp12253A253VgCagTa11AY.1030.000006
ORF1ab/nsp12253A253AgcAgcG11AY.1060.000335
ORF1ab/nsp12253A253TGcAAcG11AY.1190.000035
ORF1ab/nsp12253A253delGCA---11AY.1200.000037
ORF1ab/nsp12253A253AgcAgcG11AY.1200.000037
ORF1ab/nsp12253A253SGcaTca11AY.130.000161
ORF1ab/nsp12253A253EgCagAa11AY.130.000161
ORF1ab/nsp12253A253AgcAgcC11AY.140.000088
ORF1ab/nsp12253A253VgCagTa11AY.16.10.00047
ORF1ab/nsp12253A253VgCagTa11AY.230.00007
ORF1ab/nsp12253A253EgCagAa11AY.250.000006
ORF1ab/nsp12253A253VgCagTa11AY.250.000006
ORF1ab/nsp12253A253TGcaAca11AY.270.000065
ORF1ab/nsp12253A253TGcaAca11AY.30.00001
ORF1ab/nsp12253A253AgcAgcG11AY.380.000499
ORF1ab/nsp12253A253delGCA---11AY.390.000025
ORF1ab/nsp12253A253VgCAgTT11AY.390.000025
ORF1ab/nsp12253A253SGcaTca11AY.390.000025
ORF1ab/nsp12253A253AgcAgcG11AY.390.000025
ORF1ab/nsp12253A253AgcAgcG11AY.39.10.00004
ORF1ab/nsp12253A253delGCA---11AY.40.000002
ORF1ab/nsp12253A253PGcaCca11AY.40.000002
ORF1ab/nsp12253A253AgcAgcG11AY.430.000004
ORF1ab/nsp12253A253VgCagTa11AY.430.000004
ORF1ab/nsp12253A253SGcaTca11AY.440.000006
ORF1ab/nsp12253A253AgcAgcG11AY.46.40.000165
ORF1ab/nsp12253A253AgcAgcC11AY.470.000031
ORF1ab/nsp12253A253AgcAgcT11AY.590.00053
ORF1ab/nsp12253A253SGcaTca11AY.650.000533
ORF1ab/nsp12253A253delGCA---11AY.650.000533
ORF1ab/nsp12253A253AgcAgcT11AY.740.000116
ORF1ab/nsp12253A253delGCA---11AY.80.000606
ORF1ab/nsp12253A253AgcAgcC11AY.850.000427
ORF1ab/nsp12253A253VgCagTa11AY.9.10.000084
ORF1ab/nsp12253A253AgcAgcG11AY.9.20.000037
ORF1ab/nsp12253A253VgCAgTT11AY.960.002075
ORF1ab/nsp12253A253VgCagTa11AY.980.000079
ORF1ab/nsp12253A253SGcaTca11AY.980.000079
ORF1ab/nsp12253A253SGcaTca11B0.000128
ORF1ab/nsp12253A253del1gcAgc-11B.10.000009
ORF1ab/nsp12253A253AgcAgcG11B.1.10.000018
ORF1ab/nsp12253A253VgCagTa11B.1.10.000018
ORF1ab/nsp12253A253delGCA---11B.1.10.000018
ORF1ab/nsp12253A253delGCA---11B.1.1.10.000327
ORF1ab/nsp12253A253AgcAgcG11B.1.1.2070.001182
ORF1ab/nsp12253A253AgcAgcG11B.1.1.2140.000055
ORF1ab/nsp12253A253VgCagTa11B.1.1.2160.00089
ORF1ab/nsp12253A253VgCagTa11B.1.1.2220.000204
ORF1ab/nsp12253A253PGcaCca11B.1.1.3070.002532
ORF1ab/nsp12253A253AgcAgcG11B.1.1.3150.008475
ORF1ab/nsp12253A253AgcAgcG11B.1.1.3350.012987
ORF1ab/nsp12253A253SGcaTca11B.1.1.3690.000446
ORF1ab/nsp12253A253AgcAgcT11B.1.1.370.000193
ORF1ab/nsp12253A253AgcAgcG11B.1.1.3750.011905
ORF1ab/nsp12253A253TGcaAca11B.1.1.390.00051
ORF1ab/nsp12253A253VgCagTa11B.1.1.4160.000905
ORF1ab/nsp12253A253SGcaTca11B.1.1.5190.00004
ORF1ab/nsp12253A253del1gcAgc-11B.1.1600.000031
ORF1ab/nsp12253A253AgcAgcG11B.1.160.160.000929
ORF1ab/nsp12253A253SGcaTca11B.1.177.260.006993
ORF1ab/nsp12253A253SGcaTca11B.1.177.540.000606
ORF1ab/nsp12253A253SGcaTca11B.1.20.000009
ORF1ab/nsp12253A253PGcaCca11B.1.20.000009
ORF1ab/nsp12253A253TGcaAca11B.1.2210.000071
ORF1ab/nsp12253A253del1gCag-a11B.1.2210.000071
ORF1ab/nsp12253A253TGcaAca11B.1.2430.00007
ORF1ab/nsp12253A253AgcAgcG11B.1.2580.000067
ORF1ab/nsp12253A253VgCagTa11B.1.3240.001605
ORF1ab/nsp12253A253AgcAgcG11B.1.3500.002933
ORF1ab/nsp12253A253AgcAgcG11B.1.3510.00003
ORF1ab/nsp12253A253PGcaCca11B.1.3560.001727
ORF1ab/nsp12253A253SGcaTca11B.1.36.390.002217
ORF1ab/nsp12253A253VgCagTa11B.1.4270.00005
ORF1ab/nsp12253A253del1Gca-ca11B.1.4290.000024
ORF1ab/nsp12253A253SGcaTca11B.1.4340.052632
ORF1ab/nsp12253A253AgcAgcT11B.1.4590.004082
ORF1ab/nsp12253A253AgcAgcG11B.1.4740.001901
ORF1ab/nsp12253A253SGcaTca11B.1.5230.002451
ORF1ab/nsp12253A253delGCA---11B.1.5250.000113
ORF1ab/nsp12253A253AgcAgcG11B.1.5260.000024
ORF1ab/nsp12253A253EgCagAa11B.1.5460.003704
ORF1ab/nsp12253A253AgcAgcG11B.1.5770.000687
ORF1ab/nsp12253A253VgCagTa11B.1.5880.00091
ORF1ab/nsp12253A253PGcaCca11B.1.617.10.000129
ORF1ab/nsp12253A253VgCagTa11B.1.617.10.000129
ORF1ab/nsp12253A253TGcaAca11B.270.015385
ORF1ab/nsp12253A253SGcaTca11B.290.003509
ORF1ab/nsp12253A253SGcaTca11B.30.000831
ORF1ab/nsp12253A253GgCagGa11B.60.00091
ORF1ab/nsp12253A253AgcAgcG11B.6.60.000889
ORF1ab/nsp12253A253VgCagTa11C.10.002392
ORF1ab/nsp12253A253SGcaTca11C.10.002392
ORF1ab/nsp12253A253VgCagTa11D.20.000075
ORF1ab/nsp12253A253SGcaTca11D.30.005917
ORF1ab/nsp12253A253TGcaAca11P.10.000016
ORF1ab/nsp12253A253VgCagTa11P.1.140.000048
ORF1ab/nsp12253A253AgcAgcG11P.1.140.000048
ORF1ab/nsp12253A253AgcAgcG11Q.10.000126