CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 249

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12249R249RR4641RsynagGagA14415143100.99271614185-14187
ORF1ab/nsp12249R249RR4641RsynAggCgg144151050.0072840814185-14187
ORF1ab/nsp12249R249MR4641MnonsynaGgaTg1009310093114185-14187
ORF1ab/nsp12249R249SR4641SnonsynagGagT27172717114185-14187
ORF1ab/nsp12249R249GR4641GnonsynAggGgg155715550.99871514185-14187
ORF1ab/nsp12249R249GR4641GnonsynAgGGgA155720.0012845214185-14187
ORF1ab/nsp12249R249KR4641KnonsynaGgaAg11431143114185-14187
ORF1ab/nsp12249R249WR4641WnonsynAggTgg6262114185-14187
ORF1ab/nsp12249R249delR4641deldelAGG---1414114185-14187
ORF1ab/nsp12249R249TR4641TnonsynaGgaCg980.88888914185-14187
ORF1ab/nsp12249R249TR4641TnonsynaGGaCC910.11111114185-14187
ORF1ab/nsp12249R249del1R4641del1delaGga-g640.66666714185-14187
ORF1ab/nsp12249R249del1R4641del1delAgg-gg620.33333314185-14187
ORF1ab/nsp12249R249VR4641VnonsynAGGGTA210.514185-14187
ORF1ab/nsp12249R249VR4641VnonsynAGgGTg210.514185-14187
ORF1ab/nsp12249R249IR4641InonsynaGGaTA11114185-14187

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12249R249RagGagA1431014415All0.002737
ORF1ab/nsp12249R249RAggCgg10514415All0.00002
ORF1ab/nsp12249R249MaGgaTg1009310093All0.00193
ORF1ab/nsp12249R249RagGagA98259825AY.540.936785
ORF1ab/nsp12249R249MaGgaTg79667966AY.1170.673259
ORF1ab/nsp12249R249SagGagT27172717All0.00052
ORF1ab/nsp12249R249GAggGgg15551557All0.000297
ORF1ab/nsp12249R249GAgGGgA21557All0
ORF1ab/nsp12249R249RagGagA14551455B.1.20.012812
ORF1ab/nsp12249R249SagGagT14301430B.1.617.20.005385
ORF1ab/nsp12249R249KaGgaAg11431143All0.000219
ORF1ab/nsp12249R249RagGagA10731077B.1.617.20.00404
ORF1ab/nsp12249R249RAggCgg41077B.1.617.20.000015
ORF1ab/nsp12249R249GAggGgg10731073AY.40.00167
ORF1ab/nsp12249R249MaGgaTg10211021AY.46.30.953315
ORF1ab/nsp12249R249KaGgaAg741741B.1.1.70.000663
ORF1ab/nsp12249R249RagGagA598598B.1.1.70.000535
ORF1ab/nsp12249R249SagGagT502502AY.430.002224
ORF1ab/nsp12249R249RagGagA362362B.1.3960.255469
ORF1ab/nsp12249R249MaGgaTg359359AY.40.000559
ORF1ab/nsp12249R249MaGgaTg331331B.1.617.20.001246
ORF1ab/nsp12249R249RagGagA246250AY.40.000383
ORF1ab/nsp12249R249RAggCgg4250AY.40.000006
ORF1ab/nsp12249R249GAggGgg163163AY.440.000992
ORF1ab/nsp12249R249RagGagA149149C.30.11
ORF1ab/nsp12249R249SagGagT125125AY.34.10.063743
ORF1ab/nsp12249R249RagGagA116116AY.1030.00072
ORF1ab/nsp12249R249RagGagA100101B.10.000916
ORF1ab/nsp12249R249RAggCgg1101B.10.000009
ORF1ab/nsp12249R249SagGagT9999AY.460.010304
ORF1ab/nsp12249R249RAggCgg8790B.1.1.2140.004825
ORF1ab/nsp12249R249RagGagA390B.1.1.2140.000166
ORF1ab/nsp12249R249KaGgaAg7373AY.99.20.006727
ORF1ab/nsp12249R249SagGagT6565B.1.1.3740.154394
ORF1ab/nsp12249R249WAggTgg6262All0.000012
ORF1ab/nsp12249R249KaGgaAg5959AY.440.000359
ORF1ab/nsp12249R249GAggGgg5757AY.99.20.005253
ORF1ab/nsp12249R249KaGgaAg4747B.1.5260.001105
ORF1ab/nsp12249R249SagGagT4545AY.40.00007
ORF1ab/nsp12249R249SagGagT4343AY.440.000262
ORF1ab/nsp12249R249GAggGgg4343AY.50.000888
ORF1ab/nsp12249R249MaGgaTg3434AY.440.000207
ORF1ab/nsp12249R249SagGagT3434B.1.1.70.00003
ORF1ab/nsp12249R249SagGagT3232AY.1190.00113
ORF1ab/nsp12249R249GAggGgg3232AY.250.000192
ORF1ab/nsp12249R249SagGagT3232AY.390.000791
ORF1ab/nsp12249R249MaGgaTg3131AY.430.000137
ORF1ab/nsp12249R249GAggGgg3030B.1.617.20.000113
ORF1ab/nsp12249R249MaGgaTg2929AY.1030.00018
ORF1ab/nsp12249R249MaGgaTg2828B.1.1.70.000025
ORF1ab/nsp12249R249RagGagA2727AY.250.000162
ORF1ab/nsp12249R249MaGgaTg2626B.10.000238
ORF1ab/nsp12249R249SagGagT2626B.1.1.2320.047187
ORF1ab/nsp12249R249MaGgaTg2424B.1.5260.000564
ORF1ab/nsp12249R249SagGagT2323C.350.017802
ORF1ab/nsp12249R249SagGagT2222AY.1030.000137
ORF1ab/nsp12249R249GAggGgg2222AY.430.000097
ORF1ab/nsp12249R249MaGgaTg2222AY.99.20.002027
ORF1ab/nsp12249R249KaGgaAg2121B.1.617.20.000079
ORF1ab/nsp12249R249GAggGgg2020AY.1030.000124
ORF1ab/nsp12249R249KaGgaAg2020AY.40.000031
ORF1ab/nsp12249R249RagGagA2020B.1.1.3060.008768
ORF1ab/nsp12249R249RagGagA1919AY.440.000116
ORF1ab/nsp12249R249SagGagT1818AY.330.001202
ORF1ab/nsp12249R249RagGagA1818AY.620.007843
ORF1ab/nsp12249R249SagGagT1717AY.1170.001437
ORF1ab/nsp12249R249WAggTgg1717AY.40.000026
ORF1ab/nsp12249R249RagGagA1717P.10.000268
ORF1ab/nsp12249R249RagGagA1616B.1.5960.001394
ORF1ab/nsp12249R249delAGG---1414All0.000003
ORF1ab/nsp12249R249MaGgaTg1414AY.460.001457
ORF1ab/nsp12249R249WAggTgg1313AY.250.000078
ORF1ab/nsp12249R249MaGgaTg1313AY.370.004109
ORF1ab/nsp12249R249RagGagA1313AY.430.000058
ORF1ab/nsp12249R249RagGagA1313AY.750.000728
ORF1ab/nsp12249R249RagGagA1313B.1.4290.000306
ORF1ab/nsp12249R249SagGagT1212AY.1020.000318
ORF1ab/nsp12249R249KaGgaAg1212AY.1030.000075
ORF1ab/nsp12249R249MaGgaTg1212AY.390.000297
ORF1ab/nsp12249R249MaGgaTg1111AY.1190.000388
ORF1ab/nsp12249R249GAggGgg1111AY.390.000272
ORF1ab/nsp12249R249GAggGgg1111AY.420.000443
ORF1ab/nsp12249R249RagGagA1111B.1.10.0002
ORF1ab/nsp12249R249SagGagT1111B.1.10.0002
ORF1ab/nsp12249R249RagGagA1111B.1.1.5190.000437
ORF1ab/nsp12249R249RagGagA1111B.1.3510.000327
ORF1ab/nsp12249R249SagGagT1010AY.1210.001353
ORF1ab/nsp12249R249RagGagA1010AY.390.000247
ORF1ab/nsp12249R249RagGagA1010AY.7.10.001127
ORF1ab/nsp12249R249WAggTgg1010B.400.003643
ORF1ab/nsp12249R249TaGgaCg89All0.000002
ORF1ab/nsp12249R249TaGGaCC19All0
ORF1ab/nsp12249R249KaGgaAg99AY.1020.000239
ORF1ab/nsp12249R249SagGagT99AY.1160.002581
ORF1ab/nsp12249R249RagGagA99AY.160.003417
ORF1ab/nsp12249R249MaGgaTg99AY.470.00028
ORF1ab/nsp12249R249MaGgaTg99B.1.1770.000119
ORF1ab/nsp12249R249RagGagA99B.1.1770.000119
ORF1ab/nsp12249R249KaGgaAg99B.1.20.000079
ORF1ab/nsp12249R249SagGagT99B.1.20.000079
ORF1ab/nsp12249R249MaGgaTg99B.1.20.000079
ORF1ab/nsp12249R249RagGagA99B.1.5260.000212
ORF1ab/nsp12249R249KaGgaAg99P.10.000142
ORF1ab/nsp12249R249MaGgaTg88AY.250.000048
ORF1ab/nsp12249R249KaGgaAg88AY.470.000249
ORF1ab/nsp12249R249MaGgaTg88AY.840.0035
ORF1ab/nsp12249R249SagGagT88B.1.1770.000105
ORF1ab/nsp12249R249GAggGgg88B.1.20.00007
ORF1ab/nsp12249R249KaGgaAg88B.1.6210.000708
ORF1ab/nsp12249R249RAggCgg57AY.1190.000177
ORF1ab/nsp12249R249RagGagA27AY.1190.000071
ORF1ab/nsp12249R249KaGgaAg77AY.250.000042
ORF1ab/nsp12249R249KaGgaAg77AY.430.000031
ORF1ab/nsp12249R249SagGagT77AY.5.40.001937
ORF1ab/nsp12249R249MaGgaTg77AY.9.20.000257
ORF1ab/nsp12249R249KaGgaAg77B.1.1.260.036649
ORF1ab/nsp12249R249GAggGgg77B.1.2430.000487
ORF1ab/nsp12249R249SagGagT77B.1.3510.000208
ORF1ab/nsp12249R249MaGgaTg77P.20.001306
ORF1ab/nsp12249R249MaGgaTg66A0.002322
ORF1ab/nsp12249R249del1aGga-g46All0.000001
ORF1ab/nsp12249R249del1Agg-gg26All0
ORF1ab/nsp12249R249SagGagT66AY.230.000418
ORF1ab/nsp12249R249GAggGgg66AY.260.00017
ORF1ab/nsp12249R249SagGagT66AY.450.00073
ORF1ab/nsp12249R249RagGagA66AY.610.000629
ORF1ab/nsp12249R249WAggTgg66B.1.1.3540.026316
ORF1ab/nsp12249R249GAggGgg66B.1.1.70.000005
ORF1ab/nsp12249R249SagGagT66B.1.160.320.025751
ORF1ab/nsp12249R249KaGgaAg66B.1.466.20.002347
ORF1ab/nsp12249R249KaGgaAg66B.1.5950.001566
ORF1ab/nsp12249R249MaGgaTg55AY.1020.000133
ORF1ab/nsp12249R249RagGagA55AY.1170.000423
ORF1ab/nsp12249R249MaGgaTg55AY.330.000334
ORF1ab/nsp12249R249KaGgaAg55AY.350.001165
ORF1ab/nsp12249R249SagGagT55AY.39.10.000198
ORF1ab/nsp12249R249MaGgaTg55AY.450.000608
ORF1ab/nsp12249R249GAggGgg55AY.460.00052
ORF1ab/nsp12249R249RagGagA55AY.520.004072
ORF1ab/nsp12249R249SagGagT55AY.840.002187
ORF1ab/nsp12249R249MaGgaTg55B0.000639
ORF1ab/nsp12249R249delAGG---55B.1.1.70.000004
ORF1ab/nsp12249R249TaGgaCg55P.10.000079
ORF1ab/nsp12249R249GAggGgg44AY.1020.000106
ORF1ab/nsp12249R249KaGgaAg44AY.1200.000149
ORF1ab/nsp12249R249RagGagA44AY.39.10.000158
ORF1ab/nsp12249R249MaGgaTg44AY.4.20.000087
ORF1ab/nsp12249R249MaGgaTg44AY.4.30.003367
ORF1ab/nsp12249R249SagGagT44AY.400.003857
ORF1ab/nsp12249R249MaGgaTg44AY.410.001176
ORF1ab/nsp12249R249RagGagA44AY.450.000487
ORF1ab/nsp12249R249SagGagT44AY.5.30.00135
ORF1ab/nsp12249R249SagGagT44AY.610.000419
ORF1ab/nsp12249R249SagGagT44AY.620.001743
ORF1ab/nsp12249R249RagGagA44AY.9.20.000147
ORF1ab/nsp12249R249RagGagA44B.1.160.160.003717
ORF1ab/nsp12249R249RagGagA44B.1.2210.000284
ORF1ab/nsp12249R249RAggCgg34B.1.2580.0002
ORF1ab/nsp12249R249RagGagA14B.1.2580.000067
ORF1ab/nsp12249R249GAggGgg44B.1.3510.000119
ORF1ab/nsp12249R249KaGgaAg44B.1.4290.000094
ORF1ab/nsp12249R249SagGagT44B.1.617.10.000516
ORF1ab/nsp12249R249KaGgaAg44N.40.017021
ORF1ab/nsp12249R249RagGagA44P.1.150.000929
ORF1ab/nsp12249R249MaGgaTg33AY.1000.000138
ORF1ab/nsp12249R249MaGgaTg33AY.1060.001005
ORF1ab/nsp12249R249MaGgaTg33AY.1110.000549
ORF1ab/nsp12249R249SagGagT33AY.1180.000188
ORF1ab/nsp12249R249MaGgaTg33AY.1200.000112
ORF1ab/nsp12249R249SagGagT33AY.160.001139
ORF1ab/nsp12249R249SagGagT33AY.200.000117
ORF1ab/nsp12249R249MaGgaTg33AY.230.000209
ORF1ab/nsp12249R249SagGagT33AY.250.000018
ORF1ab/nsp12249R249MaGgaTg33AY.260.000085
ORF1ab/nsp12249R249RagGagA33AY.30.00003
ORF1ab/nsp12249R249KaGgaAg33AY.30.00003
ORF1ab/nsp12249R249KaGgaAg33AY.300.001187
ORF1ab/nsp12249R249SagGagT33AY.340.000291
ORF1ab/nsp12249R249KaGgaAg33AY.4.20.000065
ORF1ab/nsp12249R249RagGagA33AY.46.40.000494
ORF1ab/nsp12249R249SagGagT33AY.50.000062
ORF1ab/nsp12249R249RagGagA33AY.510.002727
ORF1ab/nsp12249R249GAggGgg33AY.90.000203
ORF1ab/nsp12249R249MaGgaTg33AY.980.000237
ORF1ab/nsp12249R249SagGagT33AY.990.003148
ORF1ab/nsp12249R249SagGagT33AY.99.20.000276
ORF1ab/nsp12249R249RagGagA33AZ.10.002602
ORF1ab/nsp12249R249GAggGgg33B.10.000027
ORF1ab/nsp12249R249GAggGgg33B.1.10.000054
ORF1ab/nsp12249R249RagGagA33B.1.1.2190.015
ORF1ab/nsp12249R249GAggGgg33B.1.1.5190.000119
ORF1ab/nsp12249R249WAggTgg33B.1.1.70.000003
ORF1ab/nsp12249R249GAggGgg33B.1.1770.00004
ORF1ab/nsp12249R249RagGagA33B.1.2100.006397
ORF1ab/nsp12249R249RagGagA33B.1.3110.000824
ORF1ab/nsp12249R249SagGagT33B.1.360.000438
ORF1ab/nsp12249R249GAggGgg33B.1.438.10.000322
ORF1ab/nsp12249R249KaGgaAg33B.1.5170.001281
ORF1ab/nsp12249R249MaGgaTg33B.1.5610.001191
ORF1ab/nsp12249R249SagGagT33B.1.5950.000783
ORF1ab/nsp12249R249GAgGGgA120.055556
ORF1ab/nsp12249R249VAGGGTA120.055556
ORF1ab/nsp12249R249VAGgGTg120.055556
ORF1ab/nsp12249R249GAggGgg120.055556
ORF1ab/nsp12249R249VAGGGTA12All0
ORF1ab/nsp12249R249VAGgGTg12All0
ORF1ab/nsp12249R249MaGgaTg22AY.1050.001286
ORF1ab/nsp12249R249MaGgaTg22AY.1100.000225
ORF1ab/nsp12249R249SagGagT22AY.120.000632
ORF1ab/nsp12249R249RagGagA22AY.1200.000074
ORF1ab/nsp12249R249MaGgaTg22AY.1210.000271
ORF1ab/nsp12249R249RagGagA22AY.16.10.00094
ORF1ab/nsp12249R249RagGagA22AY.200.000078
ORF1ab/nsp12249R249RagGagA22AY.23.10.000835
ORF1ab/nsp12249R249SagGagT22AY.290.000032
ORF1ab/nsp12249R249KaGgaAg22AY.290.000032
ORF1ab/nsp12249R249WAggTgg22AY.30.00002
ORF1ab/nsp12249R249MaGgaTg22AY.4.2.10.000298
ORF1ab/nsp12249R249GAggGgg22AY.4.50.000215
ORF1ab/nsp12249R249MaGgaTg22AY.46.20.001271
ORF1ab/nsp12249R249GAggGgg22AY.470.000062
ORF1ab/nsp12249R249MaGgaTg22AY.50.000041
ORF1ab/nsp12249R249MaGgaTg22AY.920.000575
ORF1ab/nsp12249R249SagGagT22AY.920.000575
ORF1ab/nsp12249R249RagGagA22AY.930.000546
ORF1ab/nsp12249R249SagGagT22AY.950.001522
ORF1ab/nsp12249R249SagGagT22AY.98.10.000097
ORF1ab/nsp12249R249SagGagT22B.10.000018
ORF1ab/nsp12249R249del1Agg-gg22B.10.000018
ORF1ab/nsp12249R249KaGgaAg22B.1.10.000036
ORF1ab/nsp12249R249KaGgaAg22B.1.1.280.000622
ORF1ab/nsp12249R249KaGgaAg22B.1.1.290.020619
ORF1ab/nsp12249R249GAggGgg22B.1.1.3160.00185
ORF1ab/nsp12249R249RagGagA22B.1.1.3170.000823
ORF1ab/nsp12249R249KaGgaAg22B.1.1.330.000842
ORF1ab/nsp12249R249RagGagA22B.1.1.4160.00181
ORF1ab/nsp12249R249KaGgaAg22B.1.1.5190.000079
ORF1ab/nsp12249R249RagGagA22B.1.1.5280.009615
ORF1ab/nsp12249R249KaGgaAg22B.1.1600.000062
ORF1ab/nsp12249R249RagGagA22B.1.2340.000264
ORF1ab/nsp12249R249RagGagA22B.1.2430.000139
ORF1ab/nsp12249R249RagGagA22B.1.258.110.000793
ORF1ab/nsp12249R249RagGagA22B.1.2840.026316
ORF1ab/nsp12249R249MaGgaTg22B.1.3490.00143
ORF1ab/nsp12249R249KaGgaAg22B.1.3510.000059
ORF1ab/nsp12249R249GAggGgg22B.1.3590.045455
ORF1ab/nsp12249R249KaGgaAg22B.1.360.000292
ORF1ab/nsp12249R249GAggGgg22B.1.360.000292
ORF1ab/nsp12249R249RagGagA22B.1.3690.00057
ORF1ab/nsp12249R249KaGgaAg22B.1.3960.001411
ORF1ab/nsp12249R249KaGgaAg22B.1.4700.002809
ORF1ab/nsp12249R249KaGgaAg22B.1.4990.002101
ORF1ab/nsp12249R249SagGagT22B.1.5260.000047
ORF1ab/nsp12249R249RagGagA22B.1.5380.016129
ORF1ab/nsp12249R249RagGagA22B.1.5800.00813
ORF1ab/nsp12249R249RagGagA22B.1.5950.000522
ORF1ab/nsp12249R249RagGagA22B.1.617.10.000258
ORF1ab/nsp12249R249RagGagA22B.1.6210.000177
ORF1ab/nsp12249R249del1aGga-g22B.1.6270.00404
ORF1ab/nsp12249R249KaGgaAg22B.400.000729
ORF1ab/nsp12249R249MaGgaTg110.055556
ORF1ab/nsp12249R249RagGagA110.055556
ORF1ab/nsp12249R249IaGGaTA110.055556
ORF1ab/nsp12249R249WAggTgg110.055556
ORF1ab/nsp12249R249GAggGgg11A0.000387
ORF1ab/nsp12249R249GAggGgg11A.2.20.001689
ORF1ab/nsp12249R249GAggGgg11A.30.002096
ORF1ab/nsp12249R249RagGagA11A.60.005128
ORF1ab/nsp12249R249IaGGaTA11All0
ORF1ab/nsp12249R249RagGagA11AU.10.001266
ORF1ab/nsp12249R249MaGgaTg11AY.100.00053
ORF1ab/nsp12249R249GAggGgg11AY.1000.000046
ORF1ab/nsp12249R249MaGgaTg11AY.1070.000466
ORF1ab/nsp12249R249SagGagT11AY.1070.000466
ORF1ab/nsp12249R249SagGagT11AY.1080.001103
ORF1ab/nsp12249R249MaGgaTg11AY.1080.001103
ORF1ab/nsp12249R249KaGgaAg11AY.1100.000113
ORF1ab/nsp12249R249SagGagT11AY.1130.000142
ORF1ab/nsp12249R249MaGgaTg11AY.1140.000231
ORF1ab/nsp12249R249GAggGgg11AY.1160.000287
ORF1ab/nsp12249R249RagGagA11AY.1160.000287
ORF1ab/nsp12249R249KaGgaAg11AY.1160.000287
ORF1ab/nsp12249R249MaGgaTg11AY.1180.000063
ORF1ab/nsp12249R249GAggGgg11AY.1180.000063
ORF1ab/nsp12249R249KaGgaAg11AY.1190.000035
ORF1ab/nsp12249R249GAggGgg11AY.1200.000037
ORF1ab/nsp12249R249SagGagT11AY.1200.000037
ORF1ab/nsp12249R249delAGG---11AY.1200.000037
ORF1ab/nsp12249R249WAggTgg11AY.1200.000037
ORF1ab/nsp12249R249SagGagT11AY.140.000088
ORF1ab/nsp12249R249MaGgaTg11AY.140.000088
ORF1ab/nsp12249R249RagGagA11AY.140.000088
ORF1ab/nsp12249R249SagGagT11AY.16.10.00047
ORF1ab/nsp12249R249KaGgaAg11AY.200.000039
ORF1ab/nsp12249R249SagGagT11AY.240.000431
ORF1ab/nsp12249R249RagGagA11AY.260.000028
ORF1ab/nsp12249R249KaGgaAg11AY.270.000065
ORF1ab/nsp12249R249GAggGgg11AY.280.00189
ORF1ab/nsp12249R249SagGagT11AY.30.00001
ORF1ab/nsp12249R249GAggGgg11AY.30.00001
ORF1ab/nsp12249R249MaGgaTg11AY.30.00001
ORF1ab/nsp12249R249GAggGgg11AY.3.10.000085
ORF1ab/nsp12249R249MaGgaTg11AY.300.000396
ORF1ab/nsp12249R249SagGagT11AY.320.000532
ORF1ab/nsp12249R249KaGgaAg11AY.320.000532
ORF1ab/nsp12249R249MaGgaTg11AY.320.000532
ORF1ab/nsp12249R249KaGgaAg11AY.330.000067
ORF1ab/nsp12249R249RagGagA11AY.340.000097
ORF1ab/nsp12249R249KaGgaAg11AY.360.000148
ORF1ab/nsp12249R249SagGagT11AY.360.000148
ORF1ab/nsp12249R249RagGagA11AY.370.000316
ORF1ab/nsp12249R249delAGG---11AY.390.000025
ORF1ab/nsp12249R249MaGgaTg11AY.39.10.00004
ORF1ab/nsp12249R249TaGgaCg11AY.40.000002
ORF1ab/nsp12249R249delAGG---11AY.40.000002
ORF1ab/nsp12249R249RagGagA11AY.4.10.000737
ORF1ab/nsp12249R249SagGagT11AY.4.30.000842
ORF1ab/nsp12249R249RagGagA11AY.4.50.000107
ORF1ab/nsp12249R249WAggTgg11AY.450.000122
ORF1ab/nsp12249R249KaGgaAg11AY.450.000122
ORF1ab/nsp12249R249KaGgaAg11AY.460.000104
ORF1ab/nsp12249R249RagGagA11AY.460.000104
ORF1ab/nsp12249R249MaGgaTg11AY.46.10.001027
ORF1ab/nsp12249R249KaGgaAg11AY.46.40.000165
ORF1ab/nsp12249R249MaGgaTg11AY.46.50.000198
ORF1ab/nsp12249R249RagGagA11AY.46.60.000072
ORF1ab/nsp12249R249MaGgaTg11AY.46.60.000072
ORF1ab/nsp12249R249RagGagA11AY.470.000031
ORF1ab/nsp12249R249SagGagT11AY.480.000465
ORF1ab/nsp12249R249RagGagA11AY.50.000021
ORF1ab/nsp12249R249RagGagA11AY.5.40.000277
ORF1ab/nsp12249R249RagGagA11AY.530.000288
ORF1ab/nsp12249R249MaGgaTg11AY.530.000288
ORF1ab/nsp12249R249GAgGGgA11AY.540.000095
ORF1ab/nsp12249R249KaGgaAg11AY.570.000656
ORF1ab/nsp12249R249KaGgaAg11AY.60.000041
ORF1ab/nsp12249R249MaGgaTg11AY.60.000041
ORF1ab/nsp12249R249MaGgaTg11AY.610.000105
ORF1ab/nsp12249R249MaGgaTg11AY.620.000436
ORF1ab/nsp12249R249KaGgaAg11AY.620.000436
ORF1ab/nsp12249R249delAGG---11AY.650.000533
ORF1ab/nsp12249R249SagGagT11AY.660.00107
ORF1ab/nsp12249R249MaGgaTg11AY.670.000464
ORF1ab/nsp12249R249KaGgaAg11AY.690.000187
ORF1ab/nsp12249R249SagGagT11AY.70.000196
ORF1ab/nsp12249R249SagGagT11AY.710.000475
ORF1ab/nsp12249R249MaGgaTg11AY.75.10.00018
ORF1ab/nsp12249R249GAggGgg11AY.75.10.00018
ORF1ab/nsp12249R249RagGagA11AY.75.10.00018
ORF1ab/nsp12249R249SagGagT11AY.75.10.00018
ORF1ab/nsp12249R249GAggGgg11AY.780.001541
ORF1ab/nsp12249R249delAGG---11AY.80.000606
ORF1ab/nsp12249R249GAggGgg11AY.800.001129
ORF1ab/nsp12249R249SagGagT11AY.820.001357
ORF1ab/nsp12249R249GAggGgg11AY.840.000437
ORF1ab/nsp12249R249KaGgaAg11AY.870.000833
ORF1ab/nsp12249R249SagGagT11AY.9.20.000037
ORF1ab/nsp12249R249SagGagT11AY.900.000684
ORF1ab/nsp12249R249SagGagT11AY.910.00073
ORF1ab/nsp12249R249MaGgaTg11AY.930.000273
ORF1ab/nsp12249R249MaGgaTg11AY.950.000761
ORF1ab/nsp12249R249WAggTgg11AY.950.000761
ORF1ab/nsp12249R249RagGagA11AY.980.000079
ORF1ab/nsp12249R249KaGgaAg11AY.980.000079
ORF1ab/nsp12249R249RagGagA11AY.98.10.000048
ORF1ab/nsp12249R249GAggGgg11AY.98.10.000048
ORF1ab/nsp12249R249MaGgaTg11AY.98.10.000048
ORF1ab/nsp12249R249WAggTgg11B0.000128
ORF1ab/nsp12249R249RagGagA11B0.000128
ORF1ab/nsp12249R249WAggTgg11B.10.000009
ORF1ab/nsp12249R249delAGG---11B.1.10.000018
ORF1ab/nsp12249R249WAggTgg11B.1.10.000018
ORF1ab/nsp12249R249MaGgaTg11B.1.10.000018
ORF1ab/nsp12249R249RagGagA11B.1.1.10.000327
ORF1ab/nsp12249R249delAGG---11B.1.1.10.000327
ORF1ab/nsp12249R249GAggGgg11B.1.1.1530.001095
ORF1ab/nsp12249R249RagGagA11B.1.1.160.055556
ORF1ab/nsp12249R249SagGagT11B.1.1.1610.003534
ORF1ab/nsp12249R249MaGgaTg11B.1.1.1630.007634
ORF1ab/nsp12249R249MaGgaTg11B.1.1.1740.003378
ORF1ab/nsp12249R249KaGgaAg11B.1.1.1760.000439
ORF1ab/nsp12249R249RagGagA11B.1.1.1890.001513
ORF1ab/nsp12249R249RagGagA11B.1.1.1940.00495
ORF1ab/nsp12249R249KaGgaAg11B.1.1.2140.000055
ORF1ab/nsp12249R249MaGgaTg11B.1.1.2220.000204
ORF1ab/nsp12249R249KaGgaAg11B.1.1.2940.001266
ORF1ab/nsp12249R249GAggGgg11B.1.1.3060.000438
ORF1ab/nsp12249R249SagGagT11B.1.1.3060.000438
ORF1ab/nsp12249R249MaGgaTg11B.1.1.3120.001912
ORF1ab/nsp12249R249WAggTgg11B.1.1.3260.001761
ORF1ab/nsp12249R249RagGagA11B.1.1.3290.003846
ORF1ab/nsp12249R249WAggTgg11B.1.1.330.000421
ORF1ab/nsp12249R249RagGagA11B.1.1.330.000421
ORF1ab/nsp12249R249KaGgaAg11B.1.1.3440.010753
ORF1ab/nsp12249R249RagGagA11B.1.1.370.000193
ORF1ab/nsp12249R249SagGagT11B.1.1.3720.000689
ORF1ab/nsp12249R249GAggGgg11B.1.1.390.00051
ORF1ab/nsp12249R249RagGagA11B.1.1.500.000679
ORF1ab/nsp12249R249SagGagT11B.1.1.630.000386
ORF1ab/nsp12249R249SagGagT11B.1.1.700.000341
ORF1ab/nsp12249R249KaGgaAg11B.1.1.700.000341
ORF1ab/nsp12249R249SagGagT11B.1.110.30.000718
ORF1ab/nsp12249R249KaGgaAg11B.1.1110.001175
ORF1ab/nsp12249R249RagGagA11B.1.1390.000733
ORF1ab/nsp12249R249KaGgaAg11B.1.1770.000013
ORF1ab/nsp12249R249RagGagA11B.1.177.150.000631
ORF1ab/nsp12249R249GAggGgg11B.1.177.160.000664
ORF1ab/nsp12249R249RagGagA11B.1.177.210.000076
ORF1ab/nsp12249R249KaGgaAg11B.1.177.210.000076
ORF1ab/nsp12249R249RagGagA11B.1.177.330.001645
ORF1ab/nsp12249R249KaGgaAg11B.1.177.40.000211
ORF1ab/nsp12249R249KaGgaAg11B.1.177.440.000519
ORF1ab/nsp12249R249TaGgaCg11B.1.177.70.000165
ORF1ab/nsp12249R249KaGgaAg11B.1.177.810.000189
ORF1ab/nsp12249R249delAGG---11B.1.20.000009
ORF1ab/nsp12249R249SagGagT11B.1.214.20.0006
ORF1ab/nsp12249R249SagGagT11B.1.2210.000071
ORF1ab/nsp12249R249MaGgaTg11B.1.2340.000132
ORF1ab/nsp12249R249KaGgaAg11B.1.2430.00007
ORF1ab/nsp12249R249RagGagA11B.1.258.200.015873
ORF1ab/nsp12249R249RagGagA11B.1.2650.001271
ORF1ab/nsp12249R249RagGagA11B.1.2810.021739
ORF1ab/nsp12249R249MaGgaTg11B.1.3110.000275
ORF1ab/nsp12249R249MaGgaTg11B.1.3510.00003
ORF1ab/nsp12249R249MaGgaTg11B.1.360.000146
ORF1ab/nsp12249R249RagGagA11B.1.360.000146
ORF1ab/nsp12249R249MaGgaTg11B.1.36.170.000494
ORF1ab/nsp12249R249SagGagT11B.1.36.170.000494
ORF1ab/nsp12249R249RAggCgg11B.1.36.180.00042
ORF1ab/nsp12249R249TaGgaCg11B.1.36.290.000517
ORF1ab/nsp12249R249SagGagT11B.1.36.290.000517
ORF1ab/nsp12249R249RagGagA11B.1.3620.001541
ORF1ab/nsp12249R249RagGagA11B.1.3810.007812
ORF1ab/nsp12249R249SagGagT11B.1.3960.000706
ORF1ab/nsp12249R249RagGagA11B.1.4270.00005
ORF1ab/nsp12249R249delAGG---11B.1.5250.000113
ORF1ab/nsp12249R249RagGagA11B.1.5250.000113
ORF1ab/nsp12249R249SagGagT11B.1.5610.000397
ORF1ab/nsp12249R249RagGagA11B.1.5610.000397
ORF1ab/nsp12249R249GAggGgg11B.1.5640.000426
ORF1ab/nsp12249R249KaGgaAg11B.1.5680.001111
ORF1ab/nsp12249R249KaGgaAg11B.1.5700.002941
ORF1ab/nsp12249R249RagGagA11B.1.5770.000687
ORF1ab/nsp12249R249TaGGaCC11B.1.5820.000491
ORF1ab/nsp12249R249RagGagA11B.1.5880.00091
ORF1ab/nsp12249R249SagGagT11B.1.5960.000087
ORF1ab/nsp12249R249KaGgaAg11B.1.5960.000087
ORF1ab/nsp12249R249del1aGga-g11B.1.5960.000087
ORF1ab/nsp12249R249GAggGgg11B.1.5960.000087
ORF1ab/nsp12249R249RagGagA11B.1.5970.00463
ORF1ab/nsp12249R249MaGgaTg11B.1.6030.010638
ORF1ab/nsp12249R249GAggGgg11B.1.617.10.000129
ORF1ab/nsp12249R249WAggTgg11B.1.617.20.000004
ORF1ab/nsp12249R249del1aGga-g11B.1.617.20.000004
ORF1ab/nsp12249R249MaGgaTg11B.1.6210.000089
ORF1ab/nsp12249R249RagGagA11B.1.6280.000352
ORF1ab/nsp12249R249KaGgaAg11B.1.6280.000352
ORF1ab/nsp12249R249MaGgaTg11B.1.6370.000073
ORF1ab/nsp12249R249GAggGgg11B.1.930.000934
ORF1ab/nsp12249R249RagGagA11B.400.000364
ORF1ab/nsp12249R249WAggTgg11B.610.005747
ORF1ab/nsp12249R249SagGagT11C.360.000911
ORF1ab/nsp12249R249SagGagT11C.36.30.000567
ORF1ab/nsp12249R249KaGgaAg11C.370.000116
ORF1ab/nsp12249R249RagGagA11C.370.000116
ORF1ab/nsp12249R249SagGagT11D.20.000075
ORF1ab/nsp12249R249GAggGgg11P.10.000016
ORF1ab/nsp12249R249MaGgaTg11P.10.000016
ORF1ab/nsp12249R249SagGagT11P.10.000016
ORF1ab/nsp12249R249KaGgaAg11P.1.100.000269
ORF1ab/nsp12249R249KaGgaAg11P.1.140.000048
ORF1ab/nsp12249R249KaGgaAg11P.1.150.000232
ORF1ab/nsp12249R249KaGgaAg11P.1.20.001156
ORF1ab/nsp12249R249KaGgaAg11P.1.70.000319
ORF1ab/nsp12249R249SagGagT11Q.80.000165
ORF1ab/nsp12249R249SagGagT11R.10.00009