CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 246

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12246T246TT4638TsynacCacT736570200.95315714176-14178
ORF1ab/nsp12246T246TT4638TsynacCacA73653130.042498314176-14178
ORF1ab/nsp12246T246TT4638TsynacCacG7365320.0043448714176-14178
ORF1ab/nsp12246T246IT4638InonsynaCcaTc127612680.9937314176-14178
ORF1ab/nsp12246T246IT4638InonsynaCCaTT127680.0062695914176-14178
ORF1ab/nsp12246T246NT4638NnonsynaCcaAc100960.9614176-14178
ORF1ab/nsp12246T246NT4638NnonsynaCCaAT10040.0414176-14178
ORF1ab/nsp12246T246delT4638deldelACC---1717114176-14178
ORF1ab/nsp12246T246AT4638AnonsynAccGcc16150.937514176-14178
ORF1ab/nsp12246T246AT4638AnonsynAcCGcT1610.062514176-14178
ORF1ab/nsp12246T246ST4638SnonsynAccTcc430.7514176-14178
ORF1ab/nsp12246T246ST4638SnonsynaCcaGc410.2514176-14178
ORF1ab/nsp12246T246PT4638PnonsynAccCcc33114176-14178
ORF1ab/nsp12246T246DT4638DnonsynACCGAT210.514176-14178
ORF1ab/nsp12246T246DT4638DnonsynACcGAc210.514176-14178
ORF1ab/nsp12246T246del2T4638del2delACc--c11114176-14178
ORF1ab/nsp12246T246del1T4638del1delaCca-c11114176-14178

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12246T246TacCacT70207365All0.001343
ORF1ab/nsp12246T246TacCacA3137365All0.00006
ORF1ab/nsp12246T246TacCacG327365All0.000006
ORF1ab/nsp12246T246IaCcaTc12681276All0.000243
ORF1ab/nsp12246T246IaCCaTT81276All0.000002
ORF1ab/nsp12246T246TacCacT10911154B.1.1.70.000977
ORF1ab/nsp12246T246TacCacA631154B.1.1.70.000056
ORF1ab/nsp12246T246TacCacT10341042B.1.617.20.003893
ORF1ab/nsp12246T246TacCacA81042B.1.617.20.00003
ORF1ab/nsp12246T246TacCacT9811004AY.430.004346
ORF1ab/nsp12246T246TacCacG201004AY.430.000089
ORF1ab/nsp12246T246TacCacA31004AY.430.000013
ORF1ab/nsp12246T246TacCacT390401AY.40.000607
ORF1ab/nsp12246T246TacCacA11401AY.40.000017
ORF1ab/nsp12246T246TacCacT391395B.1.20.003443
ORF1ab/nsp12246T246TacCacA3395B.1.20.000026
ORF1ab/nsp12246T246TacCacG1395B.1.20.000009
ORF1ab/nsp12246T246IaCcaTc317317AY.40.000493
ORF1ab/nsp12246T246TacCacT281286AY.1030.001745
ORF1ab/nsp12246T246TacCacA4286AY.1030.000025
ORF1ab/nsp12246T246TacCacG1286AY.1030.000006
ORF1ab/nsp12246T246TacCacT166166AY.4.20.0036
ORF1ab/nsp12246T246TacCacT110133B.10.001008
ORF1ab/nsp12246T246TacCacA23133B.10.000211
ORF1ab/nsp12246T246TacCacT126130AY.440.000767
ORF1ab/nsp12246T246TacCacA4130AY.440.000024
ORF1ab/nsp12246T246TacCacT128128B.1.1.470.684492
ORF1ab/nsp12246T246TacCacA127127B.1.5010.933824
ORF1ab/nsp12246T246TacCacT122122AY.390.003015
ORF1ab/nsp12246T246IaCcaTc109112B.1.1.70.000098
ORF1ab/nsp12246T246IaCCaTT3112B.1.1.70.000003
ORF1ab/nsp12246T246TacCacT105105B.1.1.2160.0935
ORF1ab/nsp12246T246TacCacT102103B.1.10.00185
ORF1ab/nsp12246T246TacCacA1103B.1.10.000018
ORF1ab/nsp12246T246NaCcaAc96100All0.000018
ORF1ab/nsp12246T246NaCCaAT4100All0.000001
ORF1ab/nsp12246T246TacCacT9697AY.250.000577
ORF1ab/nsp12246T246TacCacA197AY.250.000006
ORF1ab/nsp12246T246TacCacT7878B.1.2210.005541
ORF1ab/nsp12246T246TacCacT7070B.1.6280.024665
ORF1ab/nsp12246T246TacCacT5765AY.1020.001511
ORF1ab/nsp12246T246TacCacA865AY.1020.000212
ORF1ab/nsp12246T246TacCacT6363B.1.177.180.073086
ORF1ab/nsp12246T246TacCacT6061B.1.1.5190.002383
ORF1ab/nsp12246T246TacCacA161B.1.1.5190.00004
ORF1ab/nsp12246T246TacCacT6061B.1.1770.00079
ORF1ab/nsp12246T246TacCacA161B.1.1770.000013
ORF1ab/nsp12246T246IaCcaTc5959B.1.617.20.000222
ORF1ab/nsp12246T246IaCcaTc5656AY.30.000557
ORF1ab/nsp12246T246IaCcaTc5656B.1.438.10.006007
ORF1ab/nsp12246T246NaCcaAc5353AY.1030.000329
ORF1ab/nsp12246T246TacCacT5153B.1.4290.0012
ORF1ab/nsp12246T246TacCacA153B.1.4290.000024
ORF1ab/nsp12246T246TacCacG153B.1.4290.000024
ORF1ab/nsp12246T246TacCacT4251P.10.000662
ORF1ab/nsp12246T246TacCacG751P.10.00011
ORF1ab/nsp12246T246TacCacA251P.10.000032
ORF1ab/nsp12246T246TacCacT4949P.1.160.018331
ORF1ab/nsp12246T246IaCcaTc4848B.1.20.000423
ORF1ab/nsp12246T246IaCcaTc4646B.1.2790.023626
ORF1ab/nsp12246T246TacCacT4444AY.30.000438
ORF1ab/nsp12246T246TacCacT4242AY.120.013274
ORF1ab/nsp12246T246IaCcaTc4242AY.440.000256
ORF1ab/nsp12246T246IaCcaTc4040AY.250.000241
ORF1ab/nsp12246T246TacCacT3939AY.1190.001377
ORF1ab/nsp12246T246IaCcaTc3838B.1.4290.000894
ORF1ab/nsp12246T246TacCacT3737AY.460.003851
ORF1ab/nsp12246T246TacCacT3737B.1.1.2220.007548
ORF1ab/nsp12246T246TacCacT3536B.1.1600.001092
ORF1ab/nsp12246T246TacCacA136B.1.1600.000031
ORF1ab/nsp12246T246TacCacT3535AY.50.000723
ORF1ab/nsp12246T246NaCcaAc3434B.1.617.20.000128
ORF1ab/nsp12246T246IaCcaTc3131B.1.5750.009405
ORF1ab/nsp12246T246TacCacT2830AY.750.001569
ORF1ab/nsp12246T246TacCacA230AY.750.000112
ORF1ab/nsp12246T246TacCacT2929AY.1040.05754
ORF1ab/nsp12246T246TacCacT2727B.1.1.3180.008147
ORF1ab/nsp12246T246TacCacT2626B.1.617.10.003353
ORF1ab/nsp12246T246TacCacT2526B.1.6210.002213
ORF1ab/nsp12246T246TacCacA126B.1.6210.000089
ORF1ab/nsp12246T246IaCcaTc2424B.10.00022
ORF1ab/nsp12246T246TacCacT2323AY.1200.000855
ORF1ab/nsp12246T246TacCacT2222B.1.5260.000517
ORF1ab/nsp12246T246TacCacT2121AY.290.000331
ORF1ab/nsp12246T246TacCacT1921AY.39.10.000753
ORF1ab/nsp12246T246TacCacA221AY.39.10.000079
ORF1ab/nsp12246T246TacCacT2121AY.840.009186
ORF1ab/nsp12246T246TacCacT2020AY.1170.00169
ORF1ab/nsp12246T246TacCacT1720AY.200.000661
ORF1ab/nsp12246T246TacCacA320AY.200.000117
ORF1ab/nsp12246T246TacCacT1919B.1.2430.001322
ORF1ab/nsp12246T246TacCacT1919B.1.351.20.005749
ORF1ab/nsp12246T246IaCcaTc1818B.1.10.000327
ORF1ab/nsp12246T246TacCacT1818B.1.3510.000535
ORF1ab/nsp12246T246TacCacT1818C.360.016393
ORF1ab/nsp12246T246delACC---1717All0.000003
ORF1ab/nsp12246T246IaCcaTc1717AY.430.000075
ORF1ab/nsp12246T246IaCcaTc1717B.1.5950.004436
ORF1ab/nsp12246T246TacCacT1717C.37.10.044503
ORF1ab/nsp12246T246IaCcaTc1616A0.006192
ORF1ab/nsp12246T246AAccGcc1516All0.000003
ORF1ab/nsp12246T246AAcCGcT116All0
ORF1ab/nsp12246T246TacCacT1515AY.99.20.001382
ORF1ab/nsp12246T246IaCcaTc1414AY.1030.000087
ORF1ab/nsp12246T246IaCcaTc1414AY.260.000396
ORF1ab/nsp12246T246TacCacT1414B.1.438.10.001502
ORF1ab/nsp12246T246IaCcaTc1213AY.1000.000552
ORF1ab/nsp12246T246IaCCaTT113AY.1000.000046
ORF1ab/nsp12246T246TacCacT1213AY.260.00034
ORF1ab/nsp12246T246TacCacA113AY.260.000028
ORF1ab/nsp12246T246TacCacT713AY.46.40.001152
ORF1ab/nsp12246T246TacCacA613AY.46.40.000987
ORF1ab/nsp12246T246TacCacT1313R.10.00117
ORF1ab/nsp12246T246TacCacT812AY.420.000322
ORF1ab/nsp12246T246TacCacA412AY.420.000161
ORF1ab/nsp12246T246TacCacT1212B.1.2320.006448
ORF1ab/nsp12246T246IaCcaTc1212P.10.000189
ORF1ab/nsp12246T246TacCacT1212P.1.140.000574
ORF1ab/nsp12246T246IaCcaTc1111AY.1020.000292
ORF1ab/nsp12246T246TacCacT1011AY.5.40.002767
ORF1ab/nsp12246T246TacCacA111AY.5.40.000277
ORF1ab/nsp12246T246TacCacT1111AY.98.10.000533
ORF1ab/nsp12246T246TacCacT1111B.1.1.2140.00061
ORF1ab/nsp12246T246TacCacT811B.1.1.630.003086
ORF1ab/nsp12246T246TacCacA311B.1.1.630.001157
ORF1ab/nsp12246T246TacCacT1111B.1.1280.006989
ORF1ab/nsp12246T246TacCacT1010AY.1000.00046
ORF1ab/nsp12246T246TacCacT910AY.1160.002581
ORF1ab/nsp12246T246TacCacA110AY.1160.000287
ORF1ab/nsp12246T246TacCacT1010AY.230.000697
ORF1ab/nsp12246T246TacCacT1010AY.3.10.000853
ORF1ab/nsp12246T246TacCacT1010B.1.258.170.00104
ORF1ab/nsp12246T246TacCacT1010Q.80.001649
ORF1ab/nsp12246T246TacCacT99A.30.018868
ORF1ab/nsp12246T246TacCacT99AY.740.001041
ORF1ab/nsp12246T246IaCcaTc99B.1.1.2860.026087
ORF1ab/nsp12246T246TacCacT99B.1.1.3040.025281
ORF1ab/nsp12246T246TacCacT99B.1.360.001313
ORF1ab/nsp12246T246TacCacT59B.1.6370.000365
ORF1ab/nsp12246T246TacCacA49B.1.6370.000292
ORF1ab/nsp12246T246IaCcaTc88AY.370.002528
ORF1ab/nsp12246T246TacCacT88AY.60.000329
ORF1ab/nsp12246T246TacCacT88AY.980.000632
ORF1ab/nsp12246T246IaCcaTc88B.1.1.2740.040404
ORF1ab/nsp12246T246TacCacT78B.1.177.810.001325
ORF1ab/nsp12246T246TacCacA18B.1.177.810.000189
ORF1ab/nsp12246T246TacCacT88B.1.177.860.001468
ORF1ab/nsp12246T246TacCacT48C.36.30.002269
ORF1ab/nsp12246T246TacCacA48C.36.30.002269
ORF1ab/nsp12246T246IaCcaTc77AY.98.10.000339
ORF1ab/nsp12246T246TacCacT77B.1.1.280.002179
ORF1ab/nsp12246T246TacCacT77B.1.177.560.004673
ORF1ab/nsp12246T246IaCcaTc77B.1.2430.000487
ORF1ab/nsp12246T246TacCacT77B.1.36.290.003621
ORF1ab/nsp12246T246TacCacT77B.1.4590.028571
ORF1ab/nsp12246T246TacCacT66AY.1210.000812
ORF1ab/nsp12246T246IaCcaTc66AY.290.000095
ORF1ab/nsp12246T246TacCacT66AY.320.003195
ORF1ab/nsp12246T246IaCcaTc66AY.420.000241
ORF1ab/nsp12246T246TacCacT66AY.470.000187
ORF1ab/nsp12246T246IaCcaTc56AY.50.000103
ORF1ab/nsp12246T246IaCCaTT16AY.50.000021
ORF1ab/nsp12246T246IaCcaTc66AY.9.20.00022
ORF1ab/nsp12246T246TacCacT66B.1.1.10.00196
ORF1ab/nsp12246T246delACC---66B.1.1.70.000005
ORF1ab/nsp12246T246IaCcaTc66B.1.1770.000079
ORF1ab/nsp12246T246TacCacT66B.1.177.70.000989
ORF1ab/nsp12246T246TacCacT66B.1.177.770.004357
ORF1ab/nsp12246T246TacCacT66B.1.2580.000399
ORF1ab/nsp12246T246TacCacT46B.1.3690.001141
ORF1ab/nsp12246T246TacCacA26B.1.3690.00057
ORF1ab/nsp12246T246IaCcaTc66B.1.4250.017964
ORF1ab/nsp12246T246IaCcaTc46B.1.4270.000202
ORF1ab/nsp12246T246IaCCaTT26B.1.4270.000101
ORF1ab/nsp12246T246IaCcaTc66P.1.170.000971
ORF1ab/nsp12246T246TacCacT55AY.1110.000916
ORF1ab/nsp12246T246IaCcaTc55AY.1200.000186
ORF1ab/nsp12246T246TacCacT55AY.16.10.00235
ORF1ab/nsp12246T246TacCacT55AY.29.10.001103
ORF1ab/nsp12246T246TacCacT55AY.330.000334
ORF1ab/nsp12246T246IaCcaTc55AY.470.000156
ORF1ab/nsp12246T246TacCacT55AY.5.30.001687
ORF1ab/nsp12246T246TacCacT55AY.590.002648
ORF1ab/nsp12246T246IaCcaTc55AY.610.000524
ORF1ab/nsp12246T246TacCacT55AY.880.004421
ORF1ab/nsp12246T246TacCacT55B.1.1.2650.015773
ORF1ab/nsp12246T246TacCacT55B.1.1.3700.063291
ORF1ab/nsp12246T246TacCacT55B.1.1.700.001705
ORF1ab/nsp12246T246IaCcaTc55B.1.2340.00066
ORF1ab/nsp12246T246TacCacT55B.1.5250.000566
ORF1ab/nsp12246T246IaCcaTc55B.1.5260.000118
ORF1ab/nsp12246T246IaCcaTc55B.1.5960.000436
ORF1ab/nsp12246T246IaCcaTc55C.360.004554
ORF1ab/nsp12246T246IaCcaTc55P.20.000933
ORF1ab/nsp12246T246SAccTcc34All0.000001
ORF1ab/nsp12246T246SaCcaGc14All0
ORF1ab/nsp12246T246TacCacT44AY.340.000388
ORF1ab/nsp12246T246IaCcaTc44AY.390.000099
ORF1ab/nsp12246T246IaCcaTc44AY.4.50.00043
ORF1ab/nsp12246T246IaCcaTc44AY.450.000487
ORF1ab/nsp12246T246TacCacT44AY.46.60.000289
ORF1ab/nsp12246T246TacCacT44AY.610.000419
ORF1ab/nsp12246T246TacCacT44AY.730.002661
ORF1ab/nsp12246T246TacCacT44AY.75.10.000721
ORF1ab/nsp12246T246TacCacT44AY.9.20.000147
ORF1ab/nsp12246T246TacCacT44AY.910.002922
ORF1ab/nsp12246T246TacCacT44AY.920.001149
ORF1ab/nsp12246T246TacCacT44AY.940.001771
ORF1ab/nsp12246T246TacCacT34B0.000383
ORF1ab/nsp12246T246TacCacA14B0.000128
ORF1ab/nsp12246T246TacCacT44B.1.1.250.002274
ORF1ab/nsp12246T246TacCacT44B.1.1.3160.0037
ORF1ab/nsp12246T246TacCacT44B.1.1.3970.009009
ORF1ab/nsp12246T246AAccGcc44B.1.1.5190.000159
ORF1ab/nsp12246T246TacCacT44B.1.2410.003247
ORF1ab/nsp12246T246IaCcaTc44B.1.36.170.001976
ORF1ab/nsp12246T246TacCacT44B.1.36.360.002408
ORF1ab/nsp12246T246TacCacT44B.1.3610.005155
ORF1ab/nsp12246T246TacCacT34B.1.4270.000151
ORF1ab/nsp12246T246TacCacA14B.1.4270.00005
ORF1ab/nsp12246T246AAccGcc44B.1.5760.003626
ORF1ab/nsp12246T246TacCacT34B.1.5960.000261
ORF1ab/nsp12246T246TacCacA14B.1.5960.000087
ORF1ab/nsp12246T246TacCacT44B.1.6090.001918
ORF1ab/nsp12246T246TacCacT44C.260.029412
ORF1ab/nsp12246T246IaCcaTc44C.36.30.002269
ORF1ab/nsp12246T246TacCacT34C.370.000348
ORF1ab/nsp12246T246TacCacA14C.370.000116
ORF1ab/nsp12246T246TacCacT44D.20.0003
ORF1ab/nsp12246T246TacCacT44Q.30.00058
ORF1ab/nsp12246T246TacCacT33A.2.50.001497
ORF1ab/nsp12246T246IaCcaTc33A.2.50.001497
ORF1ab/nsp12246T246PAccCcc33All0.000001
ORF1ab/nsp12246T246IaCcaTc33AY.1180.000188
ORF1ab/nsp12246T246TacCacT33AY.160.001139
ORF1ab/nsp12246T246TacCacT33AY.34.10.00153
ORF1ab/nsp12246T246IaCcaTc33AY.4.20.000065
ORF1ab/nsp12246T246TacCacT33AY.4.50.000322
ORF1ab/nsp12246T246TacCacT33AY.660.003209
ORF1ab/nsp12246T246TacCacT33AY.7.10.000338
ORF1ab/nsp12246T246IaCcaTc33AY.880.002653
ORF1ab/nsp12246T246TacCacT33AY.90.000203
ORF1ab/nsp12246T246TacCacT33AY.950.002283
ORF1ab/nsp12246T246TacCacT33AY.990.003148
ORF1ab/nsp12246T246IaCcaTc33B0.000383
ORF1ab/nsp12246T246TacCacT33B.1.1.1640.015464
ORF1ab/nsp12246T246TacCacT33B.1.1.2250.021583
ORF1ab/nsp12246T246TacCacT33B.1.1.2840.000322
ORF1ab/nsp12246T246IaCcaTc33B.1.1.3480.002389
ORF1ab/nsp12246T246IaCcaTc33B.1.1.4410.15
ORF1ab/nsp12246T246IaCcaTc23B.1.1.5190.000079
ORF1ab/nsp12246T246IaCCaTT13B.1.1.5190.00004
ORF1ab/nsp12246T246NaCCaAT33B.1.1.630.001157
ORF1ab/nsp12246T246TacCacT33B.1.1390.002199
ORF1ab/nsp12246T246TacCacT33B.1.1950.015075
ORF1ab/nsp12246T246TacCacT33B.1.3110.000824
ORF1ab/nsp12246T246IaCcaTc33B.1.351.20.000908
ORF1ab/nsp12246T246IaCcaTc33B.1.3690.000856
ORF1ab/nsp12246T246IaCcaTc33B.1.5610.001191
ORF1ab/nsp12246T246IaCcaTc33B.1.5820.001472
ORF1ab/nsp12246T246TacCacT33B.1.5950.000783
ORF1ab/nsp12246T246IaCcaTc33B.6.60.002667
ORF1ab/nsp12246T246TacCacT33P.1.20.003468
ORF1ab/nsp12246T246TacCacT33P.20.00056
ORF1ab/nsp12246T246TacCacT33P.50.041096
ORF1ab/nsp12246T246AAcCGcT120.055556
ORF1ab/nsp12246T246NaCCaAT120.055556
ORF1ab/nsp12246T246AAccGcc120.055556
ORF1ab/nsp12246T246TacCacT120.055556
ORF1ab/nsp12246T246TacCacA120.055556
ORF1ab/nsp12246T246DACcGAc120.055556
ORF1ab/nsp12246T246NaCcaAc120.055556
ORF1ab/nsp12246T246DACCGAT120.055556
ORF1ab/nsp12246T246TacCacT22A.190.018868
ORF1ab/nsp12246T246DACcGAc12All0
ORF1ab/nsp12246T246DACCGAT12All0
ORF1ab/nsp12246T246TacCacT22AY.1060.00067
ORF1ab/nsp12246T246TacCacT22AY.1080.002205
ORF1ab/nsp12246T246TacCacT22AY.1140.000462
ORF1ab/nsp12246T246IaCcaTc22AY.1170.000169
ORF1ab/nsp12246T246TacCacT22AY.1180.000125
ORF1ab/nsp12246T246IaCcaTc22AY.200.000078
ORF1ab/nsp12246T246TacCacT22AY.270.000129
ORF1ab/nsp12246T246IaCcaTc22AY.340.000194
ORF1ab/nsp12246T246TacCacT22AY.350.000466
ORF1ab/nsp12246T246TacCacT22AY.370.000632
ORF1ab/nsp12246T246IaCcaTc22AY.4.2.10.000298
ORF1ab/nsp12246T246IaCcaTc22AY.410.000588
ORF1ab/nsp12246T246NaCcaAc22AY.440.000012
ORF1ab/nsp12246T246TacCacT22AY.450.000243
ORF1ab/nsp12246T246IaCcaTc22AY.460.000208
ORF1ab/nsp12246T246TacCacT22AY.520.001629
ORF1ab/nsp12246T246TacCacT22AY.530.000575
ORF1ab/nsp12246T246TacCacT22AY.620.000871
ORF1ab/nsp12246T246TacCacT22AY.630.000774
ORF1ab/nsp12246T246TacCacT22AY.760.009662
ORF1ab/nsp12246T246TacCacT22AY.820.002714
ORF1ab/nsp12246T246IaCcaTc22AY.980.000158
ORF1ab/nsp12246T246NaCcaAc22B.1.10.000036
ORF1ab/nsp12246T246TacCacT22B.1.1.2070.002364
ORF1ab/nsp12246T246TacCacT22B.1.1.2770.001517
ORF1ab/nsp12246T246TacCacT22B.1.1.2940.002532
ORF1ab/nsp12246T246IaCcaTc22B.1.1.2980.001724
ORF1ab/nsp12246T246TacCacT22B.1.1.3060.000877
ORF1ab/nsp12246T246TacCacT22B.1.1.3110.000716
ORF1ab/nsp12246T246TacCacT22B.1.1.3690.000892
ORF1ab/nsp12246T246TacCacT22B.1.1.530.027397
ORF1ab/nsp12246T246TacCacT12B.1.177.120.000152
ORF1ab/nsp12246T246TacCacA12B.1.177.120.000152
ORF1ab/nsp12246T246IaCcaTc22B.1.177.20.009091
ORF1ab/nsp12246T246TacCacT22B.1.177.210.000153
ORF1ab/nsp12246T246TacCacT22B.1.177.440.001038
ORF1ab/nsp12246T246TacCacT22B.1.177.600.000437
ORF1ab/nsp12246T246TacCacT22B.1.177.690.002967
ORF1ab/nsp12246T246TacCacT22B.1.177.80.001505
ORF1ab/nsp12246T246TacCacT22B.1.177.90.002663
ORF1ab/nsp12246T246delACC---22B.1.20.000018
ORF1ab/nsp12246T246TacCacT22B.1.2100.004264
ORF1ab/nsp12246T246TacCacT22B.1.2340.000264
ORF1ab/nsp12246T246IaCcaTc22B.1.2400.000431
ORF1ab/nsp12246T246TacCacT22B.1.2790.001027
ORF1ab/nsp12246T246TacCacT22B.1.2800.014286
ORF1ab/nsp12246T246IaCcaTc22B.1.3110.000549
ORF1ab/nsp12246T246TacCacT22B.1.3490.00143
ORF1ab/nsp12246T246TacCacT22B.1.351.30.001753
ORF1ab/nsp12246T246IaCcaTc22B.1.36.180.00084
ORF1ab/nsp12246T246TacCacT22B.1.3960.001411
ORF1ab/nsp12246T246TacCacA12B.1.5760.000907
ORF1ab/nsp12246T246TacCacT12B.1.5760.000907
ORF1ab/nsp12246T246IaCcaTc22B.1.5970.009259
ORF1ab/nsp12246T246TacCacT22B.1.930.001867
ORF1ab/nsp12246T246IaCcaTc22C.300.003454
ORF1ab/nsp12246T246TacCacT12P.1.100.000269
ORF1ab/nsp12246T246TacCacG12P.1.100.000269
ORF1ab/nsp12246T246TacCacT22P.1.120.000968
ORF1ab/nsp12246T246TacCacT22P.1.150.000465
ORF1ab/nsp12246T246TacCacT22Q.10.000253
ORF1ab/nsp12246T246TacCacT11A.20.000662
ORF1ab/nsp12246T246IaCcaTc11A.20.000662
ORF1ab/nsp12246T246IaCcaTc11A.2.40.003367
ORF1ab/nsp12246T246TacCacA11A.23.10.000704
ORF1ab/nsp12246T246TacCacT11AD.20.000219
ORF1ab/nsp12246T246TacCacT11AG.10.066667
ORF1ab/nsp12246T246del2ACc--c11All0
ORF1ab/nsp12246T246del1aCca-c11All0
ORF1ab/nsp12246T246TacCacA11AW.10.003049
ORF1ab/nsp12246T246TacCacT11AY.1070.000466
ORF1ab/nsp12246T246TacCacT11AY.1100.000113
ORF1ab/nsp12246T246IaCcaTc11AY.1100.000113
ORF1ab/nsp12246T246IaCcaTc11AY.1130.000142
ORF1ab/nsp12246T246IaCcaTc11AY.1160.000287
ORF1ab/nsp12246T246delACC---11AY.1180.000063
ORF1ab/nsp12246T246delACC---11AY.1200.000037
ORF1ab/nsp12246T246TacCacT11AY.120.20.001285
ORF1ab/nsp12246T246IaCcaTc11AY.130.000161
ORF1ab/nsp12246T246TacCacT11AY.130.000161
ORF1ab/nsp12246T246IaCcaTc11AY.140.000088
ORF1ab/nsp12246T246TacCacT11AY.140.000088
ORF1ab/nsp12246T246IaCcaTc11AY.160.00038
ORF1ab/nsp12246T246TacCacG11AY.20.000356
ORF1ab/nsp12246T246IaCcaTc11AY.230.00007
ORF1ab/nsp12246T246TacCacT11AY.23.10.000417
ORF1ab/nsp12246T246IaCcaTc11AY.23.10.000417
ORF1ab/nsp12246T246delACC---11AY.250.000006
ORF1ab/nsp12246T246IaCcaTc11AY.270.000065
ORF1ab/nsp12246T246IaCcaTc11AY.280.00189
ORF1ab/nsp12246T246IaCcaTc11AY.300.000396
ORF1ab/nsp12246T246TacCacT11AY.300.000396
ORF1ab/nsp12246T246TacCacT11AY.360.000148
ORF1ab/nsp12246T246TacCacT11AY.380.000499
ORF1ab/nsp12246T246delACC---11AY.390.000025
ORF1ab/nsp12246T246IaCcaTc11AY.39.10.00004
ORF1ab/nsp12246T246TacCacT11AY.39.1.10.000725
ORF1ab/nsp12246T246AAccGcc11AY.40.000002
ORF1ab/nsp12246T246SaCcaGc11AY.40.000002
ORF1ab/nsp12246T246NaCcaAc11AY.40.000002
ORF1ab/nsp12246T246TacCacT11AY.4.2.10.000149
ORF1ab/nsp12246T246TacCacT11AY.4.30.000842
ORF1ab/nsp12246T246del2ACc--c11AY.440.000006
ORF1ab/nsp12246T246TacCacT11AY.46.10.001027
ORF1ab/nsp12246T246TacCacT11AY.46.20.000635
ORF1ab/nsp12246T246TacCacT11AY.540.000095
ORF1ab/nsp12246T246IaCcaTc11AY.620.000436
ORF1ab/nsp12246T246TacCacT11AY.650.000533
ORF1ab/nsp12246T246delACC---11AY.650.000533
ORF1ab/nsp12246T246TacCacT11AY.680.000274
ORF1ab/nsp12246T246IaCcaTc11AY.680.000274
ORF1ab/nsp12246T246IaCcaTc11AY.7.10.000113
ORF1ab/nsp12246T246IaCcaTc11AY.750.000056
ORF1ab/nsp12246T246delACC---11AY.80.000606
ORF1ab/nsp12246T246IaCcaTc11AY.840.000437
ORF1ab/nsp12246T246TacCacT11AY.850.000427
ORF1ab/nsp12246T246TacCacT11AY.9.10.000084
ORF1ab/nsp12246T246IaCcaTc11AY.9.10.000084
ORF1ab/nsp12246T246AAccGcc11AY.9.20.000037
ORF1ab/nsp12246T246IaCcaTc11AY.920.000287
ORF1ab/nsp12246T246IaCcaTc11AY.99.20.000092
ORF1ab/nsp12246T246TacCacA11AZ.50.003509
ORF1ab/nsp12246T246NaCcaAc11B.10.000009
ORF1ab/nsp12246T246PAccCcc11B.10.000009
ORF1ab/nsp12246T246AAccGcc11B.1.10.000018
ORF1ab/nsp12246T246delACC---11B.1.10.000018
ORF1ab/nsp12246T246SAccTcc11B.1.10.000018
ORF1ab/nsp12246T246delACC---11B.1.1.10.000327
ORF1ab/nsp12246T246TacCacT11B.1.1.1010.01
ORF1ab/nsp12246T246TacCacT11B.1.1.1350.004695
ORF1ab/nsp12246T246TacCacT11B.1.1.1610.003534
ORF1ab/nsp12246T246TacCacT11B.1.1.2050.003717
ORF1ab/nsp12246T246IaCcaTc11B.1.1.2070.001182
ORF1ab/nsp12246T246TacCacA11B.1.1.2100.005714
ORF1ab/nsp12246T246TacCacT11B.1.1.2190.005
ORF1ab/nsp12246T246IaCcaTc11B.1.1.2220.000204
ORF1ab/nsp12246T246TacCacT11B.1.1.2310.003096
ORF1ab/nsp12246T246TacCacT11B.1.1.2410.00207
ORF1ab/nsp12246T246IaCcaTc11B.1.1.2550.00303
ORF1ab/nsp12246T246TacCacT11B.1.1.2580.003257
ORF1ab/nsp12246T246TacCacT11B.1.1.2790.001121
ORF1ab/nsp12246T246IaCcaTc11B.1.1.2800.003086
ORF1ab/nsp12246T246NaCcaAc11B.1.1.2840.000107
ORF1ab/nsp12246T246TacCacT11B.1.1.2860.002899
ORF1ab/nsp12246T246TacCacT11B.1.1.3070.002532
ORF1ab/nsp12246T246IaCcaTc11B.1.1.3070.002532
ORF1ab/nsp12246T246TacCacT11B.1.1.310.066667
ORF1ab/nsp12246T246IaCcaTc11B.1.1.3110.000358
ORF1ab/nsp12246T246IaCcaTc11B.1.1.3180.000302
ORF1ab/nsp12246T246TacCacT11B.1.1.3260.001761
ORF1ab/nsp12246T246TacCacT11B.1.1.330.000421
ORF1ab/nsp12246T246IaCcaTc11B.1.1.3440.010753
ORF1ab/nsp12246T246TacCacT11B.1.1.3480.000796
ORF1ab/nsp12246T246TacCacA11B.1.1.3710.010417
ORF1ab/nsp12246T246IaCcaTc11B.1.1.3780.007299
ORF1ab/nsp12246T246IaCcaTc11B.1.1.390.00051
ORF1ab/nsp12246T246TacCacT11B.1.1.4200.001006
ORF1ab/nsp12246T246IaCcaTc11B.1.1.4650.015625
ORF1ab/nsp12246T246IaCcaTc11B.1.1.50.008333
ORF1ab/nsp12246T246TacCacT11B.1.1.500.000679
ORF1ab/nsp12246T246AAccGcc11B.1.1.70.000001
ORF1ab/nsp12246T246PAccCcc11B.1.1.70.000001
ORF1ab/nsp12246T246NaCcaAc11B.1.1.70.000001
ORF1ab/nsp12246T246SAccTcc11B.1.1.70.000001
ORF1ab/nsp12246T246IaCcaTc11B.1.1.700.000341
ORF1ab/nsp12246T246TacCacT11B.1.1260.001276
ORF1ab/nsp12246T246IaCcaTc11B.1.1470.000756
ORF1ab/nsp12246T246IaCcaTc11B.1.1600.000031
ORF1ab/nsp12246T246TacCacT11B.1.160.180.007299
ORF1ab/nsp12246T246TacCacT11B.1.160.250.011111
ORF1ab/nsp12246T246SAccTcc11B.1.1770.000013
ORF1ab/nsp12246T246TacCacT11B.1.177.150.000631
ORF1ab/nsp12246T246AAccGcc11B.1.177.180.00116
ORF1ab/nsp12246T246TacCacT11B.1.177.330.001645
ORF1ab/nsp12246T246TacCacT11B.1.177.350.000691
ORF1ab/nsp12246T246TacCacT11B.1.177.380.010417
ORF1ab/nsp12246T246TacCacT11B.1.177.40.000211
ORF1ab/nsp12246T246IaCcaTc11B.1.177.40.000211
ORF1ab/nsp12246T246IaCcaTc11B.1.177.450.000381
ORF1ab/nsp12246T246TacCacT11B.1.177.50.001242
ORF1ab/nsp12246T246TacCacT11B.1.177.60.000977
ORF1ab/nsp12246T246TacCacT11B.1.177.720.00339
ORF1ab/nsp12246T246TacCacT11B.1.177.730.000566
ORF1ab/nsp12246T246IaCcaTc11B.1.177.750.001041
ORF1ab/nsp12246T246PAccCcc11B.1.20.000009
ORF1ab/nsp12246T246TacCacT11B.1.2120.016667
ORF1ab/nsp12246T246TacCacT11B.1.2140.003663
ORF1ab/nsp12246T246IaCcaTc11B.1.2210.000071
ORF1ab/nsp12246T246TacCacT11B.1.230.006061
ORF1ab/nsp12246T246TacCacT11B.1.2400.000216
ORF1ab/nsp12246T246TacCacT11B.1.243.20.014493
ORF1ab/nsp12246T246IaCcaTc11B.1.2520.006623
ORF1ab/nsp12246T246IaCcaTc11B.1.2580.000067
ORF1ab/nsp12246T246TacCacT11B.1.3010.005917
ORF1ab/nsp12246T246TacCacT11B.1.3050.002151
ORF1ab/nsp12246T246IaCcaTc11B.1.3360.002439
ORF1ab/nsp12246T246IaCcaTc11B.1.3510.00003
ORF1ab/nsp12246T246IaCcaTc11B.1.36.10.00114
ORF1ab/nsp12246T246TacCacT11B.1.36.100.004785
ORF1ab/nsp12246T246IaCcaTc11B.1.36.100.004785
ORF1ab/nsp12246T246TacCacT11B.1.36.190.009259
ORF1ab/nsp12246T246IaCcaTc11B.1.36.310.001751
ORF1ab/nsp12246T246TacCacT11B.1.36.310.001751
ORF1ab/nsp12246T246TacCacT11B.1.36.390.002217
ORF1ab/nsp12246T246TacCacT11B.1.36.80.001
ORF1ab/nsp12246T246IaCcaTc11B.1.3750.00082
ORF1ab/nsp12246T246TacCacT11B.1.3750.00082
ORF1ab/nsp12246T246TacCacT11B.1.3890.001002
ORF1ab/nsp12246T246TacCacT11B.1.390.003906
ORF1ab/nsp12246T246IaCcaTc11B.1.4000.000429
ORF1ab/nsp12246T246TacCacT11B.1.4000.000429
ORF1ab/nsp12246T246TacCacT11B.1.4020.009804
ORF1ab/nsp12246T246IaCcaTc11B.1.4040.001302
ORF1ab/nsp12246T246TacCacT11B.1.4090.000781
ORF1ab/nsp12246T246IaCcaTc11B.1.4160.001269
ORF1ab/nsp12246T246TacCacT11B.1.4170.028571
ORF1ab/nsp12246T246TacCacT11B.1.4860.111111
ORF1ab/nsp12246T246TacCacT11B.1.4970.000315
ORF1ab/nsp12246T246IaCcaTc11B.1.5250.000113
ORF1ab/nsp12246T246delACC---11B.1.5250.000113
ORF1ab/nsp12246T246TacCacT11B.1.5440.006024
ORF1ab/nsp12246T246TacCacT11B.1.5460.003704
ORF1ab/nsp12246T246TacCacT11B.1.5510.00129
ORF1ab/nsp12246T246TacCacT11B.1.5580.004566
ORF1ab/nsp12246T246TacCacT11B.1.5640.000426
ORF1ab/nsp12246T246TacCacT11B.1.5740.002151
ORF1ab/nsp12246T246TacCacT11B.1.5770.000687
ORF1ab/nsp12246T246IaCcaTc11B.1.5810.009434
ORF1ab/nsp12246T246TacCacT11B.1.5990.00365
ORF1ab/nsp12246T246IaCcaTc11B.1.6090.000479
ORF1ab/nsp12246T246IaCcaTc11B.1.617.10.000129
ORF1ab/nsp12246T246TacCacT11B.1.617.30.002985
ORF1ab/nsp12246T246IaCcaTc11B.1.6200.000946
ORF1ab/nsp12246T246TacCacT11B.1.6200.000946
ORF1ab/nsp12246T246AAccGcc11B.1.621.10.000506
ORF1ab/nsp12246T246TacCacT11B.1.6230.000536
ORF1ab/nsp12246T246TacCacT11B.1.6270.00202
ORF1ab/nsp12246T246IaCcaTc11B.1.6270.00202
ORF1ab/nsp12246T246TacCacA11B.1.9.50.005682
ORF1ab/nsp12246T246TacCacT11B.190.037037
ORF1ab/nsp12246T246TacCacT11B.40.002208
ORF1ab/nsp12246T246TacCacT11C.140.004329
ORF1ab/nsp12246T246TacCacT11C.160.00106
ORF1ab/nsp12246T246TacCacA11C.180.002591
ORF1ab/nsp12246T246IaCcaTc11D.20.000075
ORF1ab/nsp12246T246TacCacT11N.40.004255
ORF1ab/nsp12246T246TacCacT11P.1.10.000318
ORF1ab/nsp12246T246del1aCca-c11P.1.10.000318
ORF1ab/nsp12246T246IaCcaTc11P.1.100.000269
ORF1ab/nsp12246T246IaCcaTc11P.1.150.000232
ORF1ab/nsp12246T246TacCacT11P.1.170.000162
ORF1ab/nsp12246T246TacCacA11P.1.40.000977
ORF1ab/nsp12246T246TacCacT11P.1.90.004808
ORF1ab/nsp12246T246TacCacT11P.40.003802
ORF1ab/nsp12246T246TacCacT11P.70.004367
ORF1ab/nsp12246T246TacCacA11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.