CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 246 | T246T | T4638T | syn | acC | acT | 7365 | 7020 | 0.953157 | 14176-14178 |
ORF1ab/nsp12 | 246 | T246T | T4638T | syn | acC | acA | 7365 | 313 | 0.0424983 | 14176-14178 |
ORF1ab/nsp12 | 246 | T246T | T4638T | syn | acC | acG | 7365 | 32 | 0.00434487 | 14176-14178 |
ORF1ab/nsp12 | 246 | T246I | T4638I | nonsyn | aCc | aTc | 1276 | 1268 | 0.99373 | 14176-14178 |
ORF1ab/nsp12 | 246 | T246I | T4638I | nonsyn | aCC | aTT | 1276 | 8 | 0.00626959 | 14176-14178 |
ORF1ab/nsp12 | 246 | T246N | T4638N | nonsyn | aCc | aAc | 100 | 96 | 0.96 | 14176-14178 |
ORF1ab/nsp12 | 246 | T246N | T4638N | nonsyn | aCC | aAT | 100 | 4 | 0.04 | 14176-14178 |
ORF1ab/nsp12 | 246 | T246del | T4638del | del | ACC | --- | 17 | 17 | 1 | 14176-14178 |
ORF1ab/nsp12 | 246 | T246A | T4638A | nonsyn | Acc | Gcc | 16 | 15 | 0.9375 | 14176-14178 |
ORF1ab/nsp12 | 246 | T246A | T4638A | nonsyn | AcC | GcT | 16 | 1 | 0.0625 | 14176-14178 |
ORF1ab/nsp12 | 246 | T246S | T4638S | nonsyn | Acc | Tcc | 4 | 3 | 0.75 | 14176-14178 |
ORF1ab/nsp12 | 246 | T246S | T4638S | nonsyn | aCc | aGc | 4 | 1 | 0.25 | 14176-14178 |
ORF1ab/nsp12 | 246 | T246P | T4638P | nonsyn | Acc | Ccc | 3 | 3 | 1 | 14176-14178 |
ORF1ab/nsp12 | 246 | T246D | T4638D | nonsyn | ACC | GAT | 2 | 1 | 0.5 | 14176-14178 |
ORF1ab/nsp12 | 246 | T246D | T4638D | nonsyn | ACc | GAc | 2 | 1 | 0.5 | 14176-14178 |
ORF1ab/nsp12 | 246 | T246del2 | T4638del2 | del | ACc | --c | 1 | 1 | 1 | 14176-14178 |
ORF1ab/nsp12 | 246 | T246del1 | T4638del1 | del | aCc | a-c | 1 | 1 | 1 | 14176-14178 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 7020 | 7365 | All | 0.001343 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 313 | 7365 | All | 0.00006 |
ORF1ab/nsp12 | 246 | T246T | acC | acG | 32 | 7365 | All | 0.000006 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1268 | 1276 | All | 0.000243 |
ORF1ab/nsp12 | 246 | T246I | aCC | aTT | 8 | 1276 | All | 0.000002 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1091 | 1154 | B.1.1.7 | 0.000977 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 63 | 1154 | B.1.1.7 | 0.000056 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1034 | 1042 | B.1.617.2 | 0.003893 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 8 | 1042 | B.1.617.2 | 0.00003 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 981 | 1004 | AY.43 | 0.004346 |
ORF1ab/nsp12 | 246 | T246T | acC | acG | 20 | 1004 | AY.43 | 0.000089 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 3 | 1004 | AY.43 | 0.000013 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 390 | 401 | AY.4 | 0.000607 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 11 | 401 | AY.4 | 0.000017 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 391 | 395 | B.1.2 | 0.003443 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 3 | 395 | B.1.2 | 0.000026 |
ORF1ab/nsp12 | 246 | T246T | acC | acG | 1 | 395 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 317 | 317 | AY.4 | 0.000493 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 281 | 286 | AY.103 | 0.001745 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 4 | 286 | AY.103 | 0.000025 |
ORF1ab/nsp12 | 246 | T246T | acC | acG | 1 | 286 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 166 | 166 | AY.4.2 | 0.0036 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 110 | 133 | B.1 | 0.001008 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 23 | 133 | B.1 | 0.000211 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 126 | 130 | AY.44 | 0.000767 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 4 | 130 | AY.44 | 0.000024 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 128 | 128 | B.1.1.47 | 0.684492 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 127 | 127 | B.1.501 | 0.933824 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 122 | 122 | AY.39 | 0.003015 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 109 | 112 | B.1.1.7 | 0.000098 |
ORF1ab/nsp12 | 246 | T246I | aCC | aTT | 3 | 112 | B.1.1.7 | 0.000003 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 105 | 105 | B.1.1.216 | 0.0935 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 102 | 103 | B.1.1 | 0.00185 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 103 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 246 | T246N | aCc | aAc | 96 | 100 | All | 0.000018 |
ORF1ab/nsp12 | 246 | T246N | aCC | aAT | 4 | 100 | All | 0.000001 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 96 | 97 | AY.25 | 0.000577 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 97 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 78 | 78 | B.1.221 | 0.005541 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 70 | 70 | B.1.628 | 0.024665 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 57 | 65 | AY.102 | 0.001511 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 8 | 65 | AY.102 | 0.000212 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 63 | 63 | B.1.177.18 | 0.073086 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 60 | 61 | B.1.1.519 | 0.002383 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 61 | B.1.1.519 | 0.00004 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 60 | 61 | B.1.177 | 0.00079 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 61 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 59 | 59 | B.1.617.2 | 0.000222 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 56 | 56 | AY.3 | 0.000557 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 56 | 56 | B.1.438.1 | 0.006007 |
ORF1ab/nsp12 | 246 | T246N | aCc | aAc | 53 | 53 | AY.103 | 0.000329 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 51 | 53 | B.1.429 | 0.0012 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 53 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 246 | T246T | acC | acG | 1 | 53 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 42 | 51 | P.1 | 0.000662 |
ORF1ab/nsp12 | 246 | T246T | acC | acG | 7 | 51 | P.1 | 0.00011 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 2 | 51 | P.1 | 0.000032 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 49 | 49 | P.1.16 | 0.018331 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 48 | 48 | B.1.2 | 0.000423 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 46 | 46 | B.1.279 | 0.023626 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 44 | 44 | AY.3 | 0.000438 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 42 | 42 | AY.12 | 0.013274 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 42 | 42 | AY.44 | 0.000256 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 40 | 40 | AY.25 | 0.000241 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 39 | 39 | AY.119 | 0.001377 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 38 | 38 | B.1.429 | 0.000894 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 37 | 37 | AY.46 | 0.003851 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 37 | 37 | B.1.1.222 | 0.007548 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 35 | 36 | B.1.160 | 0.001092 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 36 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 35 | 35 | AY.5 | 0.000723 |
ORF1ab/nsp12 | 246 | T246N | aCc | aAc | 34 | 34 | B.1.617.2 | 0.000128 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 31 | 31 | B.1.575 | 0.009405 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 28 | 30 | AY.75 | 0.001569 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 2 | 30 | AY.75 | 0.000112 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 29 | 29 | AY.104 | 0.05754 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 27 | 27 | B.1.1.318 | 0.008147 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 26 | 26 | B.1.617.1 | 0.003353 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 25 | 26 | B.1.621 | 0.002213 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 26 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 24 | 24 | B.1 | 0.00022 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 23 | 23 | AY.120 | 0.000855 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 22 | 22 | B.1.526 | 0.000517 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 21 | 21 | AY.29 | 0.000331 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 19 | 21 | AY.39.1 | 0.000753 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 2 | 21 | AY.39.1 | 0.000079 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 21 | 21 | AY.84 | 0.009186 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 20 | 20 | AY.117 | 0.00169 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 17 | 20 | AY.20 | 0.000661 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 3 | 20 | AY.20 | 0.000117 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 19 | 19 | B.1.243 | 0.001322 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 19 | 19 | B.1.351.2 | 0.005749 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 18 | 18 | B.1.1 | 0.000327 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 18 | 18 | B.1.351 | 0.000535 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 18 | 18 | C.36 | 0.016393 |
ORF1ab/nsp12 | 246 | T246del | ACC | --- | 17 | 17 | All | 0.000003 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 17 | 17 | AY.43 | 0.000075 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 17 | 17 | B.1.595 | 0.004436 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 17 | 17 | C.37.1 | 0.044503 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 16 | 16 | A | 0.006192 |
ORF1ab/nsp12 | 246 | T246A | Acc | Gcc | 15 | 16 | All | 0.000003 |
ORF1ab/nsp12 | 246 | T246A | AcC | GcT | 1 | 16 | All | 0 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 15 | 15 | AY.99.2 | 0.001382 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 14 | 14 | AY.103 | 0.000087 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 14 | 14 | AY.26 | 0.000396 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 14 | 14 | B.1.438.1 | 0.001502 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 12 | 13 | AY.100 | 0.000552 |
ORF1ab/nsp12 | 246 | T246I | aCC | aTT | 1 | 13 | AY.100 | 0.000046 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 12 | 13 | AY.26 | 0.00034 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 13 | AY.26 | 0.000028 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 7 | 13 | AY.46.4 | 0.001152 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 6 | 13 | AY.46.4 | 0.000987 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 13 | 13 | R.1 | 0.00117 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 8 | 12 | AY.42 | 0.000322 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 4 | 12 | AY.42 | 0.000161 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 12 | 12 | B.1.232 | 0.006448 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 12 | 12 | P.1 | 0.000189 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 12 | 12 | P.1.14 | 0.000574 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 11 | 11 | AY.102 | 0.000292 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 10 | 11 | AY.5.4 | 0.002767 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 11 | AY.5.4 | 0.000277 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 11 | 11 | AY.98.1 | 0.000533 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 11 | 11 | B.1.1.214 | 0.00061 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 8 | 11 | B.1.1.63 | 0.003086 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 3 | 11 | B.1.1.63 | 0.001157 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 11 | 11 | B.1.128 | 0.006989 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 10 | 10 | AY.100 | 0.00046 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 9 | 10 | AY.116 | 0.002581 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 10 | AY.116 | 0.000287 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 10 | 10 | AY.23 | 0.000697 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 10 | 10 | AY.3.1 | 0.000853 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 10 | 10 | B.1.258.17 | 0.00104 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 10 | 10 | Q.8 | 0.001649 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 9 | 9 | A.3 | 0.018868 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 9 | 9 | AY.74 | 0.001041 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 9 | 9 | B.1.1.286 | 0.026087 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 9 | 9 | B.1.1.304 | 0.025281 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 9 | 9 | B.1.36 | 0.001313 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 5 | 9 | B.1.637 | 0.000365 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 4 | 9 | B.1.637 | 0.000292 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 8 | 8 | AY.37 | 0.002528 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 8 | 8 | AY.6 | 0.000329 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 8 | 8 | AY.98 | 0.000632 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 8 | 8 | B.1.1.274 | 0.040404 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 7 | 8 | B.1.177.81 | 0.001325 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 8 | B.1.177.81 | 0.000189 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 8 | 8 | B.1.177.86 | 0.001468 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 4 | 8 | C.36.3 | 0.002269 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 4 | 8 | C.36.3 | 0.002269 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 7 | 7 | AY.98.1 | 0.000339 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 7 | 7 | B.1.1.28 | 0.002179 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 7 | 7 | B.1.177.56 | 0.004673 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 7 | 7 | B.1.243 | 0.000487 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 7 | 7 | B.1.36.29 | 0.003621 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 7 | 7 | B.1.459 | 0.028571 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 6 | 6 | AY.121 | 0.000812 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 6 | 6 | AY.32 | 0.003195 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 5 | 6 | AY.5 | 0.000103 |
ORF1ab/nsp12 | 246 | T246I | aCC | aTT | 1 | 6 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 6 | 6 | B.1.1.1 | 0.00196 |
ORF1ab/nsp12 | 246 | T246del | ACC | --- | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 6 | 6 | B.1.177.7 | 0.000989 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 6 | 6 | B.1.177.77 | 0.004357 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 6 | 6 | B.1.258 | 0.000399 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 4 | 6 | B.1.369 | 0.001141 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 2 | 6 | B.1.369 | 0.00057 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 6 | 6 | B.1.425 | 0.017964 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 4 | 6 | B.1.427 | 0.000202 |
ORF1ab/nsp12 | 246 | T246I | aCC | aTT | 2 | 6 | B.1.427 | 0.000101 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 6 | 6 | P.1.17 | 0.000971 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 5 | 5 | AY.111 | 0.000916 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 5 | 5 | AY.16.1 | 0.00235 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 5 | 5 | AY.29.1 | 0.001103 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 5 | 5 | AY.5.3 | 0.001687 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 5 | 5 | AY.59 | 0.002648 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 5 | 5 | AY.88 | 0.004421 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 5 | 5 | B.1.1.265 | 0.015773 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 5 | 5 | B.1.1.370 | 0.063291 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 5 | 5 | B.1.1.70 | 0.001705 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 5 | 5 | C.36 | 0.004554 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp12 | 246 | T246S | Acc | Tcc | 3 | 4 | All | 0.000001 |
ORF1ab/nsp12 | 246 | T246S | aCc | aGc | 1 | 4 | All | 0 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 4 | 4 | AY.73 | 0.002661 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 4 | 4 | AY.91 | 0.002922 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 4 | 4 | AY.92 | 0.001149 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 4 | 4 | AY.94 | 0.001771 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 3 | 4 | B | 0.000383 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 4 | B | 0.000128 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 4 | 4 | B.1.1.25 | 0.002274 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 4 | 4 | B.1.1.316 | 0.0037 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 4 | 4 | B.1.1.397 | 0.009009 |
ORF1ab/nsp12 | 246 | T246A | Acc | Gcc | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 4 | 4 | B.1.241 | 0.003247 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 4 | 4 | B.1.36.17 | 0.001976 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 4 | 4 | B.1.36.36 | 0.002408 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 4 | 4 | B.1.361 | 0.005155 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 3 | 4 | B.1.427 | 0.000151 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 4 | B.1.427 | 0.00005 |
ORF1ab/nsp12 | 246 | T246A | Acc | Gcc | 4 | 4 | B.1.576 | 0.003626 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 3 | 4 | B.1.596 | 0.000261 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 4 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 4 | 4 | C.26 | 0.029412 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 4 | 4 | C.36.3 | 0.002269 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 3 | 4 | C.37 | 0.000348 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 4 | C.37 | 0.000116 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 4 | 4 | Q.3 | 0.00058 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp12 | 246 | T246P | Acc | Ccc | 3 | 3 | All | 0.000001 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 3 | 3 | AY.34.1 | 0.00153 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 3 | 3 | AY.66 | 0.003209 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 3 | 3 | AY.7.1 | 0.000338 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 3 | 3 | AY.88 | 0.002653 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 3 | 3 | AY.95 | 0.002283 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 3 | 3 | AY.99 | 0.003148 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 3 | 3 | B | 0.000383 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 3 | 3 | B.1.1.164 | 0.015464 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 3 | 3 | B.1.1.225 | 0.021583 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 3 | 3 | B.1.1.441 | 0.15 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 2 | 3 | B.1.1.519 | 0.000079 |
ORF1ab/nsp12 | 246 | T246I | aCC | aTT | 1 | 3 | B.1.1.519 | 0.00004 |
ORF1ab/nsp12 | 246 | T246N | aCC | aAT | 3 | 3 | B.1.1.63 | 0.001157 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 3 | 3 | B.1.139 | 0.002199 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 3 | 3 | B.1.195 | 0.015075 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 3 | 3 | B.1.351.2 | 0.000908 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 3 | 3 | B.1.561 | 0.001191 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 3 | 3 | B.1.582 | 0.001472 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 3 | 3 | B.6.6 | 0.002667 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 3 | 3 | P.1.2 | 0.003468 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 3 | 3 | P.5 | 0.041096 |
ORF1ab/nsp12 | 246 | T246A | AcC | GcT | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 246 | T246N | aCC | aAT | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 246 | T246A | Acc | Gcc | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 246 | T246D | ACc | GAc | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 246 | T246N | aCc | aAc | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 246 | T246D | ACC | GAT | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | A.19 | 0.018868 |
ORF1ab/nsp12 | 246 | T246D | ACc | GAc | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 246 | T246D | ACC | GAT | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp12 | 246 | T246N | aCc | aAc | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | AY.63 | 0.000774 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | AY.76 | 0.009662 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp12 | 246 | T246N | aCc | aAc | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 2 | 2 | B.1.1.298 | 0.001724 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | B.1.1.369 | 0.000892 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | B.1.1.53 | 0.027397 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 2 | B.1.177.12 | 0.000152 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 2 | B.1.177.12 | 0.000152 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 2 | 2 | B.1.177.2 | 0.009091 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | B.1.177.69 | 0.002967 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | B.1.177.8 | 0.001505 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | B.1.177.9 | 0.002663 |
ORF1ab/nsp12 | 246 | T246del | ACC | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | B.1.210 | 0.004264 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | B.1.279 | 0.001027 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | B.1.280 | 0.014286 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 2 | B.1.576 | 0.000907 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 2 | B.1.576 | 0.000907 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 2 | 2 | B.1.597 | 0.009259 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | B.1.93 | 0.001867 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 2 | 2 | C.30 | 0.003454 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 2 | P.1.10 | 0.000269 |
ORF1ab/nsp12 | 246 | T246T | acC | acG | 1 | 2 | P.1.10 | 0.000269 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | AG.1 | 0.066667 |
ORF1ab/nsp12 | 246 | T246del2 | ACc | --c | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 246 | T246del1 | aCc | a-c | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp12 | 246 | T246del | ACC | --- | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 246 | T246del | ACC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp12 | 246 | T246T | acC | acG | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp12 | 246 | T246del | ACC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp12 | 246 | T246del | ACC | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF1ab/nsp12 | 246 | T246A | Acc | Gcc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 246 | T246S | aCc | aGc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 246 | T246N | aCc | aAc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp12 | 246 | T246del2 | ACc | --c | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp12 | 246 | T246del | ACC | --- | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 246 | T246del | ACC | --- | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 246 | T246A | Acc | Gcc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp12 | 246 | T246N | aCc | aAc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 246 | T246P | Acc | Ccc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 246 | T246A | Acc | Gcc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 246 | T246del | ACC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 246 | T246S | Acc | Tcc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 246 | T246del | ACC | --- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.1.219 | 0.005 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.1.255 | 0.00303 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp12 | 246 | T246N | aCc | aAc | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.1.31 | 0.066667 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.1.378 | 0.007299 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.1.465 | 0.015625 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.1.5 | 0.008333 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp12 | 246 | T246A | Acc | Gcc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 246 | T246P | Acc | Ccc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 246 | T246N | aCc | aAc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 246 | T246S | Acc | Tcc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.160.18 | 0.007299 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.160.25 | 0.011111 |
ORF1ab/nsp12 | 246 | T246S | Acc | Tcc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp12 | 246 | T246A | Acc | Gcc | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.177.38 | 0.010417 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp12 | 246 | T246P | Acc | Ccc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.212 | 0.016667 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.243.2 | 0.014493 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.252 | 0.006623 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.39 | 0.003906 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.402 | 0.009804 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.417 | 0.028571 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.486 | 0.111111 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 246 | T246del | ACC | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp12 | 246 | T246A | Acc | Gcc | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.19 | 0.037037 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp12 | 246 | T246del1 | aCc | a-c | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp12 | 246 | T246I | aCc | aTc | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | P.4 | 0.003802 |
ORF1ab/nsp12 | 246 | T246T | acC | acT | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp12 | 246 | T246T | acC | acA | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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