CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 228

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12228G228SG4620SnonsynGgtAgt8538500.99648314122-14124
ORF1ab/nsp12228G228SG4620SnonsynGgTAgC85330.00351714122-14124
ORF1ab/nsp12228G228CG4620CnonsynGgtTgt574574114122-14124
ORF1ab/nsp12228G228DG4620DnonsyngGtgAt329329114122-14124
ORF1ab/nsp12228G228GG4620GsynggTggC72700.97222214122-14124
ORF1ab/nsp12228G228GG4620GsynggTggG7220.027777814122-14124
ORF1ab/nsp12228G228VG4620VnonsyngGtgTt50470.9414122-14124
ORF1ab/nsp12228G228VG4620VnonsyngGTgTC5020.0414122-14124
ORF1ab/nsp12228G228VG4620VnonsyngGTgTG5010.0214122-14124
ORF1ab/nsp12228G228AG4620AnonsyngGtgCt44430.97727314122-14124
ORF1ab/nsp12228G228AG4620AnonsyngGTgCC4410.022727314122-14124
ORF1ab/nsp12228G228delG4620deldelGGT---1414114122-14124
ORF1ab/nsp12228G228RG4620RnonsynGgtCgt1090.914122-14124
ORF1ab/nsp12228G228RG4620RnonsynGgTAgG1010.114122-14124
ORF1ab/nsp12228G228IG4620InonsynGGtATt420.514122-14124
ORF1ab/nsp12228G228IG4620InonsynGGTATC420.514122-14124
ORF1ab/nsp12228G228WG4620WnonsynGgTTgG11114122-14124
ORF1ab/nsp12228G228MG4620MnonsynGGTATG11114122-14124

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12228G228SGgtAgt850853All0.000163
ORF1ab/nsp12228G228SGgTAgC3853All0.000001
ORF1ab/nsp12228G228SGgtAgt590590B.1.617.20.002222
ORF1ab/nsp12228G228CGgtTgt574574All0.00011
ORF1ab/nsp12228G228DgGtgAt329329All0.000063
ORF1ab/nsp12228G228CGgtTgt135135AY.1030.000838
ORF1ab/nsp12228G228CGgtTgt7777AY.40.00012
ORF1ab/nsp12228G228GggTggC7072All0.000013
ORF1ab/nsp12228G228GggTggG272All0
ORF1ab/nsp12228G228DgGtgAt6363AY.250.000379
ORF1ab/nsp12228G228CGgtTgt6161B.1.36.231
ORF1ab/nsp12228G228DgGtgAt5353AY.40.000082
ORF1ab/nsp12228G228VgGtgTt4750All0.000009
ORF1ab/nsp12228G228VgGTgTC250All0
ORF1ab/nsp12228G228VgGTgTG150All0
ORF1ab/nsp12228G228SGgtAgt4646B.1.1.70.000041
ORF1ab/nsp12228G228AgGtgCt4344All0.000008
ORF1ab/nsp12228G228AgGTgCC144All0
ORF1ab/nsp12228G228AgGtgCt4040B.1.1.70.000036
ORF1ab/nsp12228G228DgGtgAt3333B.1.1.70.00003
ORF1ab/nsp12228G228CGgtTgt3232AY.430.000142
ORF1ab/nsp12228G228CGgtTgt3131B.1.1.70.000028
ORF1ab/nsp12228G228CGgtTgt2929AY.260.000821
ORF1ab/nsp12228G228SGgtAgt2828AY.560.044944
ORF1ab/nsp12228G228DgGtgAt2727B.1.6210.00239
ORF1ab/nsp12228G228CGgtTgt2424B.1.1.1440.685714
ORF1ab/nsp12228G228CGgtTgt2424B.1.617.20.00009
ORF1ab/nsp12228G228DgGtgAt2323AY.30.000229
ORF1ab/nsp12228G228GggTggC2323B.1.1.70.000021
ORF1ab/nsp12228G228SGgtAgt2020AY.40.000031
ORF1ab/nsp12228G228DgGtgAt2020B.1.5700.058824
ORF1ab/nsp12228G228SGgtAgt1919B.1.5260.000447
ORF1ab/nsp12228G228CGgtTgt1818B.10.000165
ORF1ab/nsp12228G228DgGtgAt1616AY.430.000071
ORF1ab/nsp12228G228CGgtTgt1515B.1.5260.000353
ORF1ab/nsp12228G228delGGT---1414All0.000003
ORF1ab/nsp12228G228GggTggC1313B.1.5260.000306
ORF1ab/nsp12228G228CGgtTgt1212B.1.214.20.007194
ORF1ab/nsp12228G228RGgtCgt910All0.000002
ORF1ab/nsp12228G228RGgTAgG110All0
ORF1ab/nsp12228G228DgGtgAt99AY.440.000055
ORF1ab/nsp12228G228SGgtAgt99B.10.000082
ORF1ab/nsp12228G228CGgtTgt88A0.003096
ORF1ab/nsp12228G228SGgtAgt88AY.400.007715
ORF1ab/nsp12228G228DgGtgAt88AY.470.000249
ORF1ab/nsp12228G228VgGtgTt88B.1.1.70.000007
ORF1ab/nsp12228G228CGgtTgt77AY.1070.003262
ORF1ab/nsp12228G228SGgtAgt77AY.16.10.003289
ORF1ab/nsp12228G228CGgtTgt77P.1.70.002235
ORF1ab/nsp12228G228DgGtgAt66B.10.000055
ORF1ab/nsp12228G228CGgtTgt66P.10.000095
ORF1ab/nsp12228G228VgGTgTC250.111111
ORF1ab/nsp12228G228VgGtgTt250.111111
ORF1ab/nsp12228G228VgGTgTG150.055556
ORF1ab/nsp12228G228DgGtgAt55AY.1210.000677
ORF1ab/nsp12228G228SGgtAgt55AY.200.000194
ORF1ab/nsp12228G228CGgtTgt55AY.250.00003
ORF1ab/nsp12228G228GggTggC55AY.40.000008
ORF1ab/nsp12228G228CGgtTgt55AY.4.30.004209
ORF1ab/nsp12228G228SGgtAgt55AY.420.000201
ORF1ab/nsp12228G228GggTggC55AY.46.60.000361
ORF1ab/nsp12228G228GggTggC55B.1.1.4340.001743
ORF1ab/nsp12228G228delGGT---55B.1.1.70.000004
ORF1ab/nsp12228G228CGgtTgt55B.1.1770.000066
ORF1ab/nsp12228G228VgGtgTt55B.1.617.20.000019
ORF1ab/nsp12228G228VgGtgTt55D.20.000375
ORF1ab/nsp12228G228SGgtAgt240.111111
ORF1ab/nsp12228G228SGgTAgC240.111111
ORF1ab/nsp12228G228IGGTATC240.111111
ORF1ab/nsp12228G228IGGtATt240.111111
ORF1ab/nsp12228G228IGGtATt24All0
ORF1ab/nsp12228G228IGGTATC24All0
ORF1ab/nsp12228G228CGgtTgt44AY.1020.000106
ORF1ab/nsp12228G228SGgtAgt44AY.1030.000025
ORF1ab/nsp12228G228CGgtTgt44AY.30.00004
ORF1ab/nsp12228G228CGgtTgt44AY.440.000024
ORF1ab/nsp12228G228SGgtAgt44AY.480.00186
ORF1ab/nsp12228G228CGgtTgt44AY.750.000224
ORF1ab/nsp12228G228CGgtTgt44B0.000511
ORF1ab/nsp12228G228SGgtAgt44B.1.2340.000528
ORF1ab/nsp12228G228SGgtAgt44B.1.3510.000119
ORF1ab/nsp12228G228VgGtgTt44B.1.5960.000349
ORF1ab/nsp12228G228DgGtgAt44D.20.0003
ORF1ab/nsp12228G228DgGtgAt44P.10.000063
ORF1ab/nsp12228G228SGgtAgt44P.1.140.000191
ORF1ab/nsp12228G228SGgtAgt44Q.30.00058
ORF1ab/nsp12228G228GggTggC230.111111
ORF1ab/nsp12228G228GggTggG130.055556
ORF1ab/nsp12228G228DgGtgAt33AY.1020.00008
ORF1ab/nsp12228G228SGgtAgt33AY.1200.000112
ORF1ab/nsp12228G228SGgtAgt33AY.390.000074
ORF1ab/nsp12228G228CGgtTgt33AY.390.000074
ORF1ab/nsp12228G228CGgtTgt33AY.420.000121
ORF1ab/nsp12228G228SGgtAgt33AY.430.000013
ORF1ab/nsp12228G228CGgtTgt33AY.470.000093
ORF1ab/nsp12228G228SGgtAgt33AY.520.002443
ORF1ab/nsp12228G228SGgtAgt33AY.680.000821
ORF1ab/nsp12228G228DgGtgAt33B.1.10.000054
ORF1ab/nsp12228G228SGgtAgt33B.1.1.3060.001315
ORF1ab/nsp12228G228SGgtAgt33B.1.1.5190.000119
ORF1ab/nsp12228G228RGgtCgt33B.1.20.000026
ORF1ab/nsp12228G228DgGtgAt33B.1.20.000026
ORF1ab/nsp12228G228SGgtAgt33B.1.20.000026
ORF1ab/nsp12228G228DgGtgAt33B.1.2580.0002
ORF1ab/nsp12228G228SGgtAgt33B.1.258.170.000312
ORF1ab/nsp12228G228SGgtAgt33B.1.3460.003932
ORF1ab/nsp12228G228DgGtgAt33B.1.3610.003866
ORF1ab/nsp12228G228DgGtgAt33B.1.4040.003906
ORF1ab/nsp12228G228DgGtgAt33B.1.617.20.000011
ORF1ab/nsp12228G228SGgtAgt22AY.1020.000053
ORF1ab/nsp12228G228GggTggC22AY.1020.000053
ORF1ab/nsp12228G228VgGtgTt22AY.1030.000012
ORF1ab/nsp12228G228CGgtTgt22AY.120.10.000642
ORF1ab/nsp12228G228CGgtTgt22AY.140.000176
ORF1ab/nsp12228G228SGgtAgt22AY.250.000012
ORF1ab/nsp12228G228GggTggC22AY.30.00002
ORF1ab/nsp12228G228CGgtTgt22AY.360.000296
ORF1ab/nsp12228G228SGgtAgt22AY.470.000062
ORF1ab/nsp12228G228SGgtAgt22AY.550.001835
ORF1ab/nsp12228G228SGgtAgt22AY.640.00119
ORF1ab/nsp12228G228SGgtAgt22AY.75.10.000361
ORF1ab/nsp12228G228SGgtAgt22AY.9.20.000073
ORF1ab/nsp12228G228SGgtAgt22AY.98.10.000097
ORF1ab/nsp12228G228DgGtgAt22AY.99.20.000184
ORF1ab/nsp12228G228VgGtgTt22B.10.000018
ORF1ab/nsp12228G228GggTggC12B.10.000009
ORF1ab/nsp12228G228GggTggG12B.10.000009
ORF1ab/nsp12228G228CGgtTgt22B.1.10.000036
ORF1ab/nsp12228G228DgGtgAt22B.1.1.4130.013793
ORF1ab/nsp12228G228DgGtgAt22B.1.1.5190.000079
ORF1ab/nsp12228G228RGgtCgt22B.1.1770.000026
ORF1ab/nsp12228G228VgGtgTt22B.1.20.000018
ORF1ab/nsp12228G228CGgtTgt22B.1.2400.000431
ORF1ab/nsp12228G228DgGtgAt22B.1.2430.000139
ORF1ab/nsp12228G228SGgtAgt22B.1.2890.005319
ORF1ab/nsp12228G228CGgtTgt22B.1.3110.000549
ORF1ab/nsp12228G228CGgtTgt22B.1.4270.000101
ORF1ab/nsp12228G228DgGtgAt22B.1.4270.000101
ORF1ab/nsp12228G228CGgtTgt22B.1.4290.000047
ORF1ab/nsp12228G228GggTggC22B.1.4290.000047
ORF1ab/nsp12228G228GggTggC22B.1.4370.041667
ORF1ab/nsp12228G228delGGT---22B.1.5250.000226
ORF1ab/nsp12228G228DgGtgAt22B.1.5260.000047
ORF1ab/nsp12228G228DgGtgAt22B.1.6280.000705
ORF1ab/nsp12228G228VgGtgTt22B.1.6370.000146
ORF1ab/nsp12228G228SGgtAgt22P.10.000032
ORF1ab/nsp12228G228SGgtAgt22Q.80.00033
ORF1ab/nsp12228G228MGGTATG110.055556
ORF1ab/nsp12228G228RGgTAgG110.055556
ORF1ab/nsp12228G228VgGtgTt11A.2.50.000499
ORF1ab/nsp12228G228WGgTTgG11All0
ORF1ab/nsp12228G228MGGTATG11All0
ORF1ab/nsp12228G228CGgtTgt11AY.1110.000183
ORF1ab/nsp12228G228CGgtTgt11AY.1130.000142
ORF1ab/nsp12228G228DgGtgAt11AY.1170.000085
ORF1ab/nsp12228G228SGgtAgt11AY.1180.000063
ORF1ab/nsp12228G228SGgtAgt11AY.1190.000035
ORF1ab/nsp12228G228delGGT---11AY.1200.000037
ORF1ab/nsp12228G228SGgtAgt11AY.130.000161
ORF1ab/nsp12228G228SGgtAgt11AY.140.000088
ORF1ab/nsp12228G228GggTggC11AY.160.00038
ORF1ab/nsp12228G228SGgtAgt11AY.190.00114
ORF1ab/nsp12228G228GggTggC11AY.230.00007
ORF1ab/nsp12228G228VgGtgTt11AY.240.000431
ORF1ab/nsp12228G228VgGtgTt11AY.250.000006
ORF1ab/nsp12228G228RGgtCgt11AY.250.000006
ORF1ab/nsp12228G228SGgtAgt11AY.260.000028
ORF1ab/nsp12228G228SGgtAgt11AY.270.000065
ORF1ab/nsp12228G228DgGtgAt11AY.280.00189
ORF1ab/nsp12228G228SGgtAgt11AY.280.00189
ORF1ab/nsp12228G228CGgtTgt11AY.280.00189
ORF1ab/nsp12228G228SGgtAgt11AY.290.000016
ORF1ab/nsp12228G228CGgtTgt11AY.290.000016
ORF1ab/nsp12228G228SGgtAgt11AY.30.00001
ORF1ab/nsp12228G228SGgtAgt11AY.3.10.000085
ORF1ab/nsp12228G228SGgtAgt11AY.310.018519
ORF1ab/nsp12228G228SGgtAgt11AY.320.000532
ORF1ab/nsp12228G228DgGtgAt11AY.360.000148
ORF1ab/nsp12228G228CGgtTgt11AY.380.000499
ORF1ab/nsp12228G228DgGtgAt11AY.390.000025
ORF1ab/nsp12228G228CGgtTgt11AY.39.10.00004
ORF1ab/nsp12228G228VgGtgTt11AY.4.20.000022
ORF1ab/nsp12228G228CGgtTgt11AY.4.50.000107
ORF1ab/nsp12228G228VgGtgTt11AY.430.000004
ORF1ab/nsp12228G228SGgtAgt11AY.440.000006
ORF1ab/nsp12228G228GggTggC11AY.440.000006
ORF1ab/nsp12228G228SGgtAgt11AY.460.000104
ORF1ab/nsp12228G228CGgtTgt11AY.5.30.000337
ORF1ab/nsp12228G228delGGT---11AY.5.30.000337
ORF1ab/nsp12228G228CGgtTgt11AY.590.00053
ORF1ab/nsp12228G228SGgtAgt11AY.610.000105
ORF1ab/nsp12228G228delGGT---11AY.650.000533
ORF1ab/nsp12228G228VgGtgTt11AY.720.001361
ORF1ab/nsp12228G228delGGT---11AY.80.000606
ORF1ab/nsp12228G228VgGtgTt11AY.850.000427
ORF1ab/nsp12228G228SGgtAgt11AY.880.000884
ORF1ab/nsp12228G228DgGtgAt11AY.9.10.000084
ORF1ab/nsp12228G228CGgtTgt11AY.9.20.000037
ORF1ab/nsp12228G228CGgtTgt11AY.940.000443
ORF1ab/nsp12228G228SGgtAgt11AY.99.20.000092
ORF1ab/nsp12228G228AgGTgCC11B.10.000009
ORF1ab/nsp12228G228delGGT---11B.1.10.000018
ORF1ab/nsp12228G228delGGT---11B.1.1.10.000327
ORF1ab/nsp12228G228DgGtgAt11B.1.1.10.000327
ORF1ab/nsp12228G228GggTggC11B.1.1.2070.001182
ORF1ab/nsp12228G228CGgtTgt11B.1.1.2140.000055
ORF1ab/nsp12228G228CGgtTgt11B.1.1.2770.000759
ORF1ab/nsp12228G228DgGtgAt11B.1.1.2840.000107
ORF1ab/nsp12228G228SGgtAgt11B.1.1.2940.001266
ORF1ab/nsp12228G228DgGtgAt11B.1.1.2940.001266
ORF1ab/nsp12228G228SGgtAgt11B.1.1.3050.003861
ORF1ab/nsp12228G228SGgtAgt11B.1.1.3150.008475
ORF1ab/nsp12228G228SGgTAgC11B.1.1.4090.002833
ORF1ab/nsp12228G228CGgtTgt11B.1.1.440.00241
ORF1ab/nsp12228G228CGgtTgt11B.1.1.5190.00004
ORF1ab/nsp12228G228RGgtCgt11B.1.1.5190.00004
ORF1ab/nsp12228G228SGgtAgt11B.1.1.5210.005348
ORF1ab/nsp12228G228SGgtAgt11B.1.1460.004237
ORF1ab/nsp12228G228SGgtAgt11B.1.1590.012195
ORF1ab/nsp12228G228VgGtgTt11B.1.1770.000013
ORF1ab/nsp12228G228SGgtAgt11B.1.177.110.001698
ORF1ab/nsp12228G228DgGtgAt11B.1.177.730.000566
ORF1ab/nsp12228G228SGgtAgt11B.1.177.810.000189
ORF1ab/nsp12228G228delGGT---11B.1.20.000009
ORF1ab/nsp12228G228CGgtTgt11B.1.20.000009
ORF1ab/nsp12228G228WGgTTgG11B.1.20.000009
ORF1ab/nsp12228G228SGgtAgt11B.1.2140.003663
ORF1ab/nsp12228G228SGgtAgt11B.1.2210.000071
ORF1ab/nsp12228G228CGgtTgt11B.1.2340.000132
ORF1ab/nsp12228G228DgGtgAt11B.1.2400.000216
ORF1ab/nsp12228G228VgGtgTt11B.1.2400.000216
ORF1ab/nsp12228G228RGgtCgt11B.1.2580.000067
ORF1ab/nsp12228G228VgGtgTt11B.1.2580.000067
ORF1ab/nsp12228G228SGgtAgt11B.1.2580.000067
ORF1ab/nsp12228G228SGgtAgt11B.1.258.140.00098
ORF1ab/nsp12228G228DgGtgAt11B.1.2980.002114
ORF1ab/nsp12228G228CGgtTgt11B.1.3190.003049
ORF1ab/nsp12228G228DgGtgAt11B.1.3510.00003
ORF1ab/nsp12228G228VgGtgTt11B.1.351.30.000876
ORF1ab/nsp12228G228SGgtAgt11B.1.360.000146
ORF1ab/nsp12228G228CGgtTgt11B.1.360.000146
ORF1ab/nsp12228G228SGgtAgt11B.1.36.360.000602
ORF1ab/nsp12228G228DgGtgAt11B.1.36.80.001
ORF1ab/nsp12228G228CGgtTgt11B.1.3960.000706
ORF1ab/nsp12228G228DgGtgAt11B.1.3990.001934
ORF1ab/nsp12228G228DgGtgAt11B.1.4290.000024
ORF1ab/nsp12228G228AgGtgCt11B.1.4290.000024
ORF1ab/nsp12228G228CGgtTgt11B.1.438.10.000107
ORF1ab/nsp12228G228DgGtgAt11B.1.4500.011364
ORF1ab/nsp12228G228DgGtgAt11B.1.4510.008197
ORF1ab/nsp12228G228GggTggC11B.1.466.20.000391
ORF1ab/nsp12228G228VgGtgTt11B.1.4710.002732
ORF1ab/nsp12228G228DgGtgAt11B.1.5170.000427
ORF1ab/nsp12228G228CGgtTgt11B.1.5170.000427
ORF1ab/nsp12228G228CGgtTgt11B.1.5250.000113
ORF1ab/nsp12228G228DgGtgAt11B.1.5250.000113
ORF1ab/nsp12228G228VgGtgTt11B.1.5260.000024
ORF1ab/nsp12228G228AgGtgCt11B.1.5510.00129
ORF1ab/nsp12228G228DgGtgAt11B.1.5820.000491
ORF1ab/nsp12228G228CGgtTgt11B.1.5960.000087
ORF1ab/nsp12228G228RGgtCgt11B.1.617.20.000004
ORF1ab/nsp12228G228GggTggC11B.1.617.20.000004
ORF1ab/nsp12228G228AgGtgCt11B.1.617.20.000004
ORF1ab/nsp12228G228GggTggC11B.1.6210.000089
ORF1ab/nsp12228G228CGgtTgt11B.1.621.10.000506
ORF1ab/nsp12228G228DgGtgAt11B.1.6230.000536
ORF1ab/nsp12228G228VgGtgTt11B.30.000831
ORF1ab/nsp12228G228CGgtTgt11B.4.60.016667
ORF1ab/nsp12228G228SGgtAgt11C.10.002392
ORF1ab/nsp12228G228GggTggC11D.20.000075
ORF1ab/nsp12228G228CGgtTgt11D.20.000075
ORF1ab/nsp12228G228SGgtAgt11D.20.000075
ORF1ab/nsp12228G228VgGtgTt11P.10.000016
ORF1ab/nsp12228G228CGgtTgt11P.1.100.000269
ORF1ab/nsp12228G228DgGtgAt11P.1.140.000048
ORF1ab/nsp12228G228SGgtAgt11P.20.000187
ORF1ab/nsp12228G228DgGtgAt11R.10.00009