CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 227 | P227S | P4619S | nonsyn | Cca | Tca | 4196 | 4195 | 0.999762 | 14119-14121 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 4195 | 4196 | All | 0.000802 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 3019 | 3019 | AY.41 | 0.887419 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 184 | 184 | B.1.1.204 | 0.559271 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 171 | 171 | B.1.1.7 | 0.000153 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 103 | 103 | AY.4 | 0.00016 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 76 | 76 | B.1.526 | 0.001786 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 68 | 68 | AY.103 | 0.000422 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 50 | 50 | B.1 | 0.000458 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 43 | 43 | B.1.1.464 | 0.063328 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 29 | 29 | B.1.177 | 0.000382 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 25 | 25 | AY.44 | 0.000152 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 24 | 24 | B.1.1.311 | 0.008596 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 22 | 22 | B.1.2 | 0.000194 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 22 | 22 | B.1.243 | 0.001531 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 20 | 20 | B.1.1.159 | 0.093458 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 20 | 20 | B.1.351 | 0.000595 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 18 | 18 | AY.43 | 0.00008 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 16 | 16 | B.1.617.2 | 0.00006 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 15 | 15 | B.1.617.1 | 0.001934 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 14 | 14 | P.1 | 0.000221 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 12 | 12 | B.1.1 | 0.000218 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 12 | 12 | B.1.1.1 | 0.00392 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 11 | 11 | B.1.3 | 0.028796 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 9 | 9 | AY.119 | 0.000318 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 8 | 8 | B.1.1.434 | 0.002788 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 7 | 7 | AY.20 | 0.000272 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 6 | 6 | B.1.160 | 0.000187 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 6 | 6 | B.1.177.73 | 0.003398 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 4 | 4 | B | 0.000511 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 4 | 4 | B.1.177.15 | 0.002524 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 3 | 3 | B.1.1.369 | 0.001339 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 3 | 3 | B.1.1.526 | 0.010638 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | B.1.1.344 | 0.021505 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | B.1.177.36 | 0.032258 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | B.1.177.74 | 0.030303 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | P.1.6 | 0.003891 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | A.23 | 0.010526 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.137 | 0.0125 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.230 | 0.009174 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.357 | 0.125 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.39 | 0.003906 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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