CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 227 | P227L | P4619L | nonsyn | cCa | cTa | 173112 | 172986 | 0.999272 | 14119-14121 |
ORF1ab/nsp12 | 227 | P227L | P4619L | nonsyn | CCa | TTa | 173112 | 125 | 0.000722076 | 14119-14121 |
ORF1ab/nsp12 | 227 | P227L | P4619L | nonsyn | cCA | cTC | 173112 | 1 | 0.00000577661 | 14119-14121 |
ORF1ab/nsp12 | 227 | P227S | P4619S | nonsyn | Cca | Tca | 4196 | 4195 | 0.999762 | 14119-14121 |
ORF1ab/nsp12 | 227 | P227S | P4619S | nonsyn | CcA | TcT | 4196 | 1 | 0.000238322 | 14119-14121 |
ORF1ab/nsp12 | 227 | P227P | P4619P | syn | ccA | ccG | 2864 | 2223 | 0.776187 | 14119-14121 |
ORF1ab/nsp12 | 227 | P227P | P4619P | syn | ccA | ccC | 2864 | 515 | 0.179818 | 14119-14121 |
ORF1ab/nsp12 | 227 | P227P | P4619P | syn | ccA | ccT | 2864 | 126 | 0.0439944 | 14119-14121 |
ORF1ab/nsp12 | 227 | P227T | P4619T | nonsyn | Cca | Aca | 112 | 111 | 0.991071 | 14119-14121 |
ORF1ab/nsp12 | 227 | P227T | P4619T | nonsyn | CcA | AcC | 112 | 1 | 0.00892857 | 14119-14121 |
ORF1ab/nsp12 | 227 | P227A | P4619A | nonsyn | Cca | Gca | 101 | 101 | 1 | 14119-14121 |
ORF1ab/nsp12 | 227 | P227Q | P4619Q | nonsyn | cCa | cAa | 43 | 42 | 0.976744 | 14119-14121 |
ORF1ab/nsp12 | 227 | P227Q | P4619Q | nonsyn | cCA | cAG | 43 | 1 | 0.0232558 | 14119-14121 |
ORF1ab/nsp12 | 227 | P227del | P4619del | del | CCA | --- | 14 | 14 | 1 | 14119-14121 |
ORF1ab/nsp12 | 227 | P227R | P4619R | nonsyn | cCa | cGa | 9 | 7 | 0.777778 | 14119-14121 |
ORF1ab/nsp12 | 227 | P227R | P4619R | nonsyn | cCA | cGT | 9 | 2 | 0.222222 | 14119-14121 |
ORF1ab/nsp12 | 227 | P227I | P4619I | nonsyn | CCa | ATa | 2 | 2 | 1 | 14119-14121 |
ORF1ab/nsp12 | 227 | P227X | P4619X | nonsyn | CCa | TGa | 2 | 1 | 0.5 | 14119-14121 |
ORF1ab/nsp12 | 227 | P227X | P4619X | nonsyn | CCa | TAa | 2 | 1 | 0.5 | 14119-14121 |
ORF1ab/nsp12 | 227 | P227V | P4619V | nonsyn | CCa | GTa | 1 | 1 | 1 | 14119-14121 |
ORF1ab/nsp12 | 227 | P227C | P4619C | nonsyn | CCA | TGT | 1 | 1 | 1 | 14119-14121 |
ORF1ab/nsp12 | 227 | P227E | P4619E | nonsyn | CCa | GAa | 1 | 1 | 1 | 14119-14121 |
ORF1ab/nsp12 | 227 | P227H | P4619H | nonsyn | cCA | cAT | 1 | 1 | 1 | 14119-14121 |
ORF1ab/nsp12 | 227 | P227Y | P4619Y | nonsyn | CCA | TAT | 1 | 1 | 1 | 14119-14121 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 172986 | 173112 | All | 0.033086 |
ORF1ab/nsp12 | 227 | P227L | CCa | TTa | 125 | 173112 | All | 0.000024 |
ORF1ab/nsp12 | 227 | P227L | cCA | cTC | 1 | 173112 | All | 0 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 159088 | 159206 | B.1.1.7 | 0.142419 |
ORF1ab/nsp12 | 227 | P227L | CCa | TTa | 118 | 159206 | B.1.1.7 | 0.000106 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 4195 | 4196 | All | 0.000802 |
ORF1ab/nsp12 | 227 | P227S | CcA | TcT | 1 | 4196 | All | 0 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 3019 | 3019 | AY.41 | 0.887419 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 2223 | 2864 | All | 0.000425 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccC | 515 | 2864 | All | 0.000098 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccT | 126 | 2864 | All | 0.000024 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2239 | 2240 | Q.8 | 0.369228 |
ORF1ab/nsp12 | 227 | P227L | CCa | TTa | 1 | 2240 | Q.8 | 0.000165 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1981 | 1981 | AY.75.1 | 0.357194 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1029 | 1029 | AY.4 | 0.001602 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 965 | 966 | B.1.1 | 0.017506 |
ORF1ab/nsp12 | 227 | P227L | CCa | TTa | 1 | 966 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 893 | 893 | B.1.177.60 | 0.195063 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 776 | 778 | AY.103 | 0.004818 |
ORF1ab/nsp12 | 227 | P227L | CCa | TTa | 2 | 778 | AY.103 | 0.000012 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 692 | 693 | B.1.470 | 0.97191 |
ORF1ab/nsp12 | 227 | P227L | CCa | TTa | 1 | 693 | B.1.470 | 0.001404 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 627 | 627 | B.1 | 0.005743 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 607 | 607 | AY.25 | 0.003651 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 588 | 588 | AY.5 | 0.012142 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 497 | 497 | B.1.617.2 | 0.001871 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 494 | 494 | P.1 | 0.007782 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccC | 334 | 412 | B.1.1.7 | 0.000299 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 69 | 412 | B.1.1.7 | 0.000062 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccT | 9 | 412 | B.1.1.7 | 0.000008 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 309 | 309 | AY.118 | 0.019358 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 284 | 284 | B.1.2 | 0.002501 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 184 | 184 | B.1.1.204 | 0.559271 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 177 | 178 | Q.1 | 0.02236 |
ORF1ab/nsp12 | 227 | P227L | CCa | TTa | 1 | 178 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 176 | 176 | P.1.14 | 0.008413 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 171 | 171 | B.1.1.7 | 0.000153 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 169 | 169 | B.1.526 | 0.003972 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccC | 150 | 151 | AY.6 | 0.006169 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 151 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 149 | 149 | B.1.575 | 0.045206 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 137 | 137 | AY.43 | 0.000607 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 123 | 124 | AY.29 | 0.00194 |
ORF1ab/nsp12 | 227 | P227L | CCa | TTa | 1 | 124 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 117 | 117 | B.1.177 | 0.001541 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 111 | 112 | All | 0.000021 |
ORF1ab/nsp12 | 227 | P227T | CcA | AcC | 1 | 112 | All | 0 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 112 | 112 | B.1.499 | 0.117647 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 110 | 110 | AY.39 | 0.002718 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 103 | 103 | AY.4 | 0.00016 |
ORF1ab/nsp12 | 227 | P227A | Cca | Gca | 101 | 101 | All | 0.000019 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 100 | 100 | AY.44 | 0.000609 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 89 | 89 | B.1.177.73 | 0.050396 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 84 | 84 | B.1.1.519 | 0.003336 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 80 | 80 | AY.100 | 0.003681 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 76 | 76 | B.1.526 | 0.001786 |
ORF1ab/nsp12 | 227 | P227A | Cca | Gca | 70 | 70 | AY.103 | 0.000435 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 69 | 69 | B.1.234 | 0.009104 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 68 | 68 | AY.103 | 0.000422 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 64 | 64 | AY.102 | 0.001697 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 63 | 63 | B.1.1.371 | 0.65625 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 62 | 62 | AY.4.2 | 0.001345 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 62 | 62 | B.1.258 | 0.004126 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 58 | 58 | AY.27 | 0.003754 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 55 | 55 | AY.3 | 0.000547 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccT | 51 | 51 | B.1.621 | 0.004514 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 50 | 50 | B.1 | 0.000458 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 47 | 47 | B.1.36.29 | 0.024315 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 46 | 46 | B.1.596 | 0.004008 |
ORF1ab/nsp12 | 227 | P227Q | cCa | cAa | 42 | 43 | All | 0.000008 |
ORF1ab/nsp12 | 227 | P227Q | cCA | cAG | 1 | 43 | All | 0 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 29 | 43 | AY.4 | 0.000045 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccT | 7 | 43 | AY.4 | 0.000011 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccC | 7 | 43 | AY.4 | 0.000011 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 43 | 43 | B.1.1.464 | 0.063328 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 41 | 41 | AY.46.6 | 0.002961 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 40 | 40 | B.1.400 | 0.01716 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 40 | 40 | C.37 | 0.004643 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 39 | 39 | B.1.1.222 | 0.007956 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 39 | 39 | B.1.517 | 0.016652 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 37 | 37 | B.1.221 | 0.002628 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 33 | 33 | AY.93 | 0.009011 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 33 | 33 | B.1.429 | 0.000776 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 31 | 31 | AY.120 | 0.001153 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 30 | 30 | B.1.243 | 0.002088 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 29 | 29 | B.1.177 | 0.000382 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccT | 21 | 27 | AY.103 | 0.00013 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 6 | 27 | AY.103 | 0.000037 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 27 | 27 | AY.98.1 | 0.001308 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 26 | 26 | B.1.427 | 0.001313 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 25 | 25 | AY.44 | 0.000152 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 25 | 25 | AY.47 | 0.000778 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 24 | 24 | AY.119 | 0.000847 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 24 | 24 | B.1.1.311 | 0.008596 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 23 | 23 | AY.39.1 | 0.000911 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 23 | 23 | AY.61 | 0.00241 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 22 | 22 | B.1.2 | 0.000194 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 22 | 22 | B.1.243 | 0.001531 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 22 | 22 | B.1.595 | 0.005741 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 21 | 21 | B.1.1.318 | 0.006337 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 21 | 21 | B.1.1.432 | 0.026582 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 21 | 21 | B.1.160 | 0.000655 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 20 | 20 | AY.20 | 0.000777 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 20 | 20 | B.1.1.159 | 0.093458 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 20 | 20 | B.1.1.214 | 0.001109 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 20 | 20 | B.1.1.39 | 0.010194 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 20 | 20 | B.1.351 | 0.000595 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 20 | 20 | B.1.375 | 0.016393 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 20 | 20 | B.1.577 | 0.013746 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 19 | 19 | AY.14 | 0.001672 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 19 | 19 | AY.26 | 0.000538 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 19 | 19 | B.1.177.21 | 0.001453 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 19 | 19 | B.1.36 | 0.002772 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 19 | 19 | R.1 | 0.00171 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 18 | 18 | AY.43 | 0.00008 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 18 | 18 | B.1.1.241 | 0.037267 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 18 | 18 | Q.3 | 0.002611 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 8 | 17 | AY.43 | 0.000035 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccC | 7 | 17 | AY.43 | 0.000031 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccT | 2 | 17 | AY.43 | 0.000009 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 17 | 17 | AY.75.1 | 0.003065 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 17 | 17 | B.1.177.7 | 0.002803 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 17 | 17 | B.1.351 | 0.000505 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 17 | 17 | B.1.576 | 0.015413 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 16 | 16 | AY.23 | 0.001116 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 16 | 16 | AY.75 | 0.000896 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 16 | 16 | B.1.1.507 | 0.13913 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 16 | 16 | B.1.232 | 0.008598 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 16 | 16 | B.1.617.2 | 0.00006 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 15 | 15 | AY.119 | 0.00053 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 15 | 15 | AY.42 | 0.000603 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 15 | 15 | AY.9.2.1 | 0.029644 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 15 | 15 | B.1.240 | 0.003233 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 15 | 15 | B.1.617.1 | 0.001934 |
ORF1ab/nsp12 | 227 | P227del | CCA | --- | 14 | 14 | All | 0.000003 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 14 | 14 | P.1 | 0.000221 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 13 | 13 | B.1.1.28 | 0.004046 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 13 | 13 | B.1.369 | 0.003708 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 12 | 12 | AY.29.1 | 0.002646 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 12 | 12 | AY.4 | 0.000019 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 10 | 12 | AY.44 | 0.000061 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccT | 2 | 12 | AY.44 | 0.000012 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 12 | 12 | B.1.1 | 0.000218 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 12 | 12 | B.1.1.1 | 0.00392 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 12 | 12 | B.1.1.198 | 0.017621 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 9 | 12 | B.1.617.2 | 0.000034 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccT | 3 | 12 | B.1.617.2 | 0.000011 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 12 | 12 | B.1.637 | 0.000877 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 12 | 12 | P.1.15 | 0.002788 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 11 | 11 | AY.16.1 | 0.005169 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 11 | 11 | AY.84 | 0.004812 |
ORF1ab/nsp12 | 227 | P227Q | cCa | cAa | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 11 | 11 | B.1.3 | 0.028796 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 9 | 10 | AY.6 | 0.00037 |
ORF1ab/nsp12 | 227 | P227L | cCA | cTC | 1 | 10 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 10 | 10 | B.1.1.220 | 0.018587 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 10 | 10 | B.1.177.79 | 0.023419 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 10 | 10 | B.1.332 | 0.034965 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 10 | 10 | P.1.7 | 0.003193 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 10 | 10 | U.2 | 0.087719 |
ORF1ab/nsp12 | 227 | P227R | cCa | cGa | 7 | 9 | All | 0.000001 |
ORF1ab/nsp12 | 227 | P227R | cCA | cGT | 2 | 9 | All | 0 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 9 | 9 | AY.116.1 | 0.002803 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 9 | 9 | AY.119 | 0.000318 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccT | 9 | 9 | AY.47 | 0.00028 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 9 | 9 | B.1.1.284 | 0.000967 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 9 | 9 | B.1.160.16 | 0.008364 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 9 | 9 | B.1.177.40 | 0.046392 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 9 | 9 | B.1.311 | 0.002471 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 9 | 9 | P.1.1 | 0.002859 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 9 | 9 | P.2 | 0.00168 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 6 | 8 | AY.25 | 0.000036 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccT | 2 | 8 | AY.25 | 0.000012 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccT | 5 | 8 | AY.3 | 0.00005 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 3 | 8 | AY.3 | 0.00003 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 8 | 8 | AY.46 | 0.000833 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 8 | 8 | B | 0.001022 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 8 | 8 | B.1.1.369 | 0.00357 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 8 | 8 | B.1.1.434 | 0.002788 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 8 | 8 | B.1.525 | 0.000905 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 7 | 7 | AY.113 | 0.000997 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 7 | 7 | AY.117 | 0.000592 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 7 | 7 | AY.20 | 0.000272 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 7 | 7 | AY.38 | 0.003495 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 7 | 7 | AY.55 | 0.006422 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 7 | 7 | AY.75 | 0.000392 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 7 | 7 | AY.99.2 | 0.000645 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 7 | 7 | B.1.1.25 | 0.00398 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 7 | 7 | B.1.111 | 0.008226 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 7 | 7 | B.1.243 | 0.000487 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 7 | 7 | B.1.466.2 | 0.002739 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 7 | 7 | B.1.565 | 0.005673 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 6 | 6 | AY.36 | 0.000889 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 6 | 6 | AY.68 | 0.001642 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 6 | 6 | AY.7.1 | 0.000676 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 6 | 6 | AY.98 | 0.000474 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 6 | 6 | AZ.2 | 0.004926 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 6 | 6 | B.1.160 | 0.000187 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 6 | 6 | B.1.177.73 | 0.003398 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 6 | 6 | B.1.177.86 | 0.001101 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 6 | 6 | B.1.177.9 | 0.007989 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 5 | 6 | B.1.2 | 0.000044 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccT | 1 | 6 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 6 | 6 | B.1.214.2 | 0.003597 |
ORF1ab/nsp12 | 227 | P227A | Cca | Gca | 6 | 6 | B.1.36 | 0.000875 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp12 | 227 | P227Q | cCa | cAa | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 5 | 5 | B.1.1.218 | 0.038462 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 5 | 5 | B.1.1.311 | 0.001791 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp12 | 227 | P227del | CCA | --- | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 5 | 5 | B.1.1.70 | 0.001705 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 5 | 5 | B.1.139 | 0.003666 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 5 | 5 | B.1.160.30 | 0.014881 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 5 | 5 | B.1.36.16 | 0.007123 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 5 | 5 | B.1.509 | 0.004329 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 5 | 5 | P.1.12 | 0.00242 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 5 | 5 | P.1.16 | 0.001871 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 5 | 5 | P.1.17 | 0.000809 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 4 | 4 | A | 0.001548 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 4 | 4 | AY.114 | 0.000924 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 3 | 4 | AY.39 | 0.000074 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccC | 1 | 4 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp12 | 227 | P227Q | cCa | cAa | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 4 | 4 | AY.70 | 0.000834 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 4 | 4 | AY.88 | 0.003537 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccC | 4 | 4 | AY.93 | 0.001092 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 4 | 4 | B | 0.000511 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 3 | 4 | B.1 | 0.000027 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccC | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 4 | 4 | B.1.1.316 | 0.0037 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 4 | 4 | B.1.177.15 | 0.002524 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 4 | 4 | B.1.351.2 | 0.00121 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 4 | 4 | B.1.469 | 0.01444 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 4 | 4 | B.1.489 | 0.173913 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 4 | 4 | B.1.544 | 0.024096 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 4 | 4 | B.1.564 | 0.001704 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 4 | 4 | C.36.3 | 0.002269 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 4 | 4 | P.1.10 | 0.001078 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 3 | 3 | A.1 | 0.000846 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 3 | 3 | AU.2 | 0.007264 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp12 | 227 | P227A | Cca | Gca | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp12 | 227 | P227Q | cCa | cAa | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 3 | 3 | AY.46.5 | 0.000595 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 3 | 3 | AY.73 | 0.001996 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp12 | 227 | P227A | Cca | Gca | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 2 | 3 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccC | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 3 | 3 | B.1.1.176 | 0.001318 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 3 | 3 | B.1.1.258 | 0.009772 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 3 | 3 | B.1.1.312 | 0.005736 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 3 | 3 | B.1.1.369 | 0.001339 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 3 | 3 | B.1.1.409 | 0.008499 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 3 | 3 | B.1.1.416 | 0.002715 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 3 | 3 | B.1.1.526 | 0.010638 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccC | 3 | 3 | B.1.1.63 | 0.001157 |
ORF1ab/nsp12 | 227 | P227A | Cca | Gca | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 3 | 3 | B.1.110.3 | 0.002155 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 3 | 3 | B.1.177.48 | 0.009375 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 3 | 3 | B.1.404 | 0.003906 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 3 | 3 | B.1.497 | 0.000944 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 3 | 3 | B.1.561 | 0.001191 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 3 | 3 | B.1.623 | 0.001609 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 3 | 3 | B.1.627 | 0.006061 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp12 | 227 | P227Q | cCa | cAa | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 227 | P227X | CCa | TAa | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 227 | P227R | cCa | cGa | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 227 | P227R | cCA | cGT | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 227 | P227X | CCa | TGa | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 227 | P227S | CcA | TcT | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | A.27 | 0.003311 |
ORF1ab/nsp12 | 227 | P227I | CCa | ATa | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 227 | P227X | CCa | TAa | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 227 | P227X | CCa | TGa | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 227 | P227Q | cCa | cAa | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp12 | 227 | P227A | Cca | Gca | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp12 | 227 | P227R | cCa | cGa | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp12 | 227 | P227A | Cca | Gca | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp12 | 227 | P227Q | cCA | cAG | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 227 | P227Q | cCa | cAa | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 227 | P227A | Cca | Gca | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | AY.66 | 0.002139 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 2 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccT | 1 | 2 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | B.1.1.190 | 0.1 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | B.1.1.291 | 0.001485 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | B.1.1.335 | 0.025974 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | B.1.1.344 | 0.021505 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 2 | 2 | B.1.1.413 | 0.013793 |
ORF1ab/nsp12 | 227 | P227Q | cCa | cAa | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | B.1.1.528 | 0.009615 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp12 | 227 | P227I | CCa | ATa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | B.1.118 | 0.013423 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccC | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | B.1.177.32 | 0.002699 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | B.1.177.36 | 0.032258 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | B.1.177.5 | 0.002484 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | B.1.177.50 | 0.00939 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | B.1.177.6 | 0.001953 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | B.1.177.74 | 0.030303 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccC | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp12 | 227 | P227Q | cCa | cAa | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | B.1.206 | 0.001631 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | B.1.258.3 | 0.00335 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | B.1.265 | 0.002541 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | B.1.320 | 0.002491 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | B.1.344 | 0.016393 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccT | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp12 | 227 | P227del | CCA | --- | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | B.1.549 | 0.014388 |
ORF1ab/nsp12 | 227 | P227A | Cca | Gca | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp12 | 227 | P227R | cCa | cGa | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 227 | P227R | cCA | cGT | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | P.1.13 | 0.001797 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 2 | 2 | P.1.6 | 0.003891 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | Q.2 | 0.001227 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp12 | 227 | P227E | CCa | GAa | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 227 | P227H | cCA | cAT | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 227 | P227Y | CCA | TAT | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 227 | P227C | CCA | TGT | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 227 | P227V | CCa | GTa | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 227 | P227P | ccA | ccT | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 227 | P227A | Cca | Gca | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 227 | P227Q | cCa | cAa | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | A.23 | 0.010526 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AE.4 | 0.043478 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AL.1 | 0.012987 |
ORF1ab/nsp12 | 227 | P227H | cCA | cAT | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 227 | P227V | CCa | GTa | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 227 | P227Y | CCA | TAT | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 227 | P227C | CCA | TGT | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 227 | P227E | CCa | GAa | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 227 | P227del | CCA | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp12 | 227 | P227A | Cca | Gca | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp12 | 227 | P227A | Cca | Gca | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 227 | P227Q | cCa | cAa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp12 | 227 | P227A | Cca | Gca | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 227 | P227R | cCa | cGa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp12 | 227 | P227A | Cca | Gca | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 227 | P227del | CCA | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp12 | 227 | P227Q | cCa | cAa | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp12 | 227 | P227A | Cca | Gca | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp12 | 227 | P227del | CCA | --- | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp12 | 227 | P227del | CCA | --- | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp12 | 227 | P227Q | cCa | cAa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 227 | P227del | CCA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 227 | P227del | CCA | --- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.137 | 0.0125 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.15 | 0.013514 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.181 | 0.004545 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.203 | 0.016949 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp12 | 227 | P227R | cCa | cGa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.230 | 0.009174 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.244 | 0.015385 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.332 | 0.03125 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.333 | 0.001076 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.357 | 0.125 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.366 | 0.015873 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 1 | B.1.1.462 | 0.008621 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.462 | 0.008621 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.524 | 0.020833 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp12 | 227 | P227R | cCa | cGa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.160.11 | 0.005714 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp12 | 227 | P227A | Cca | Gca | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp12 | 227 | P227T | CcA | AcC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 227 | P227del | CCA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.214.3 | 0.007143 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.221.2 | 0.004016 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.258.7 | 0.001912 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp12 | 227 | P227Q | cCa | cAa | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.36.24 | 0.006173 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp12 | 227 | P227Q | cCa | cAa | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.379 | 0.017241 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.39 | 0.003906 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.390 | 0.010638 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.460 | 0.017857 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.483 | 0.111111 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.498 | 0.020408 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.507 | 0.011236 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.548 | 0.035714 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp12 | 227 | P227Q | cCa | cAa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 227 | P227Q | cCa | cAa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp12 | 227 | P227Q | cCa | cAa | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 1 | B.1.8 | 0.001972 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.1.94 | 0.027027 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp12 | 227 | P227Q | cCa | cAa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | C.4 | 0.01 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 227 | P227A | Cca | Gca | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp12 | 227 | P227T | Cca | Aca | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp12 | 227 | P227L | cCa | cTa | 1 | 1 | Q.5 | 0.016949 |
ORF1ab/nsp12 | 227 | P227P | ccA | ccG | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp12 | 227 | P227S | Cca | Tca | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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