CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 221

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12221D221DD4613DsyngaTgaC20352035114101-14103
ORF1ab/nsp12221D221delD4613deldelGAT---1313114101-14103
ORF1ab/nsp12221D221YD4613YnonsynGatTat1111114101-14103
ORF1ab/nsp12221D221del1D4613del1delgaTga-530.614101-14103
ORF1ab/nsp12221D221del1D4613del1delGat-at510.214101-14103
ORF1ab/nsp12221D221del1D4613del1delGAt-Tt510.214101-14103
ORF1ab/nsp12221D221VD4613VnonsyngAtgTt44114101-14103
ORF1ab/nsp12221D221GD4613GnonsyngAtgGt430.7514101-14103
ORF1ab/nsp12221D221ND4613NnonsynGatAat430.7514101-14103
ORF1ab/nsp12221D221ND4613NnonsynGaTAaC410.2514101-14103
ORF1ab/nsp12221D221GD4613GnonsyngATgGC410.2514101-14103
ORF1ab/nsp12221D221HD4613HnonsynGatCat33114101-14103
ORF1ab/nsp12221D221ED4613EnonsyngaTgaA22114101-14103
ORF1ab/nsp12221D221SD4613SnonsynGATAGC210.514101-14103
ORF1ab/nsp12221D221SD4613SnonsynGAtAGt210.514101-14103
ORF1ab/nsp12221D221XD4613XnonsynGaTTaA11114101-14103
ORF1ab/nsp12221D221CD4613CnonsynGAtTGt11114101-14103
ORF1ab/nsp12221D221KD4613KnonsynGaTAaA11114101-14103

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12221D221DgaTgaC20352035All0.000389
ORF1ab/nsp12221D221DgaTgaC746746B.1.617.20.002809
ORF1ab/nsp12221D221DgaTgaC316316AY.430.0014
ORF1ab/nsp12221D221DgaTgaC166166B.1.6050.988095
ORF1ab/nsp12221D221DgaTgaC132132B.1.1.70.000118
ORF1ab/nsp12221D221DgaTgaC8888AY.1030.000546
ORF1ab/nsp12221D221DgaTgaC5656P.50.767123
ORF1ab/nsp12221D221DgaTgaC5151B.1.4000.021879
ORF1ab/nsp12221D221DgaTgaC4343AY.460.004475
ORF1ab/nsp12221D221DgaTgaC3939AY.200.001516
ORF1ab/nsp12221D221DgaTgaC3737B.1.1.2220.007548
ORF1ab/nsp12221D221DgaTgaC3636AY.260.001019
ORF1ab/nsp12221D221DgaTgaC3636AY.40.000056
ORF1ab/nsp12221D221DgaTgaC3232AY.440.000195
ORF1ab/nsp12221D221DgaTgaC3131AY.390.000766
ORF1ab/nsp12221D221DgaTgaC2626B.10.000238
ORF1ab/nsp12221D221delGAT---1313All0.000002
ORF1ab/nsp12221D221YGatTat1111All0.000002
ORF1ab/nsp12221D221DgaTgaC1010B.1.2210.00071
ORF1ab/nsp12221D221DgaTgaC99AY.30.00009
ORF1ab/nsp12221D221DgaTgaC99AY.39.10.000357
ORF1ab/nsp12221D221DgaTgaC99AY.470.00028
ORF1ab/nsp12221D221DgaTgaC99B.1.1770.000119
ORF1ab/nsp12221D221DgaTgaC88AY.50.000165
ORF1ab/nsp12221D221DgaTgaC77AY.75.10.001262
ORF1ab/nsp12221D221DgaTgaC66B.1.4290.000141
ORF1ab/nsp12221D221DgaTgaC66Q.80.000989
ORF1ab/nsp12221D221del1gaTga-35All0.000001
ORF1ab/nsp12221D221del1GAt-Tt15All0
ORF1ab/nsp12221D221del1Gat-at15All0
ORF1ab/nsp12221D221DgaTgaC55AY.1020.000133
ORF1ab/nsp12221D221DgaTgaC55AY.1090.003698
ORF1ab/nsp12221D221DgaTgaC55B.1.5650.004052
ORF1ab/nsp12221D221DgaTgaC55B.400.001821
ORF1ab/nsp12221D221VgAtgTt44All0.000001
ORF1ab/nsp12221D221NGatAat34All0.000001
ORF1ab/nsp12221D221GgAtgGt34All0.000001
ORF1ab/nsp12221D221NGaTAaC14All0
ORF1ab/nsp12221D221GgATgGC14All0
ORF1ab/nsp12221D221DgaTgaC44AY.830.006897
ORF1ab/nsp12221D221DgaTgaC44B.1.10.000073
ORF1ab/nsp12221D221delGAT---44B.1.1.70.000004
ORF1ab/nsp12221D221DgaTgaC44B.1.20.000035
ORF1ab/nsp12221D221DgaTgaC44B.1.4270.000202
ORF1ab/nsp12221D221DgaTgaC44B.1.5260.000094
ORF1ab/nsp12221D221DgaTgaC44P.10.000063
ORF1ab/nsp12221D221HGatCat33All0.000001
ORF1ab/nsp12221D221DgaTgaC33AY.140.000264
ORF1ab/nsp12221D221DgaTgaC33AY.250.000018
ORF1ab/nsp12221D221DgaTgaC33AY.420.000121
ORF1ab/nsp12221D221SGAtAGt120.055556
ORF1ab/nsp12221D221SGATAGC120.055556
ORF1ab/nsp12221D221NGaTAaC120.055556
ORF1ab/nsp12221D221GgAtgGt120.055556
ORF1ab/nsp12221D221NGatAat120.055556
ORF1ab/nsp12221D221GgATgGC120.055556
ORF1ab/nsp12221D221EgaTgaA22All0
ORF1ab/nsp12221D221SGAtAGt12All0
ORF1ab/nsp12221D221SGATAGC12All0
ORF1ab/nsp12221D221DgaTgaC22AY.1000.000092
ORF1ab/nsp12221D221DgaTgaC22AY.1060.00067
ORF1ab/nsp12221D221DgaTgaC22AY.350.000466
ORF1ab/nsp12221D221DgaTgaC22AY.5.40.000553
ORF1ab/nsp12221D221DgaTgaC22AY.610.00021
ORF1ab/nsp12221D221DgaTgaC22AY.680.000547
ORF1ab/nsp12221D221DgaTgaC22AY.850.000854
ORF1ab/nsp12221D221DgaTgaC22AY.870.001665
ORF1ab/nsp12221D221DgaTgaC22AY.880.001768
ORF1ab/nsp12221D221YGatTat22B.10.000018
ORF1ab/nsp12221D221DgaTgaC22B.1.2580.000133
ORF1ab/nsp12221D221DgaTgaC22B.1.360.000292
ORF1ab/nsp12221D221delGAT---22B.1.5250.000226
ORF1ab/nsp12221D221DgaTgaC22B.1.6210.000177
ORF1ab/nsp12221D221DgaTgaC22B.1.6370.000146
ORF1ab/nsp12221D221DgaTgaC22N.60.014184
ORF1ab/nsp12221D221DgaTgaC110.055556
ORF1ab/nsp12221D221YGatTat110.055556
ORF1ab/nsp12221D221EgaTgaA110.055556
ORF1ab/nsp12221D221XGaTTaA110.055556
ORF1ab/nsp12221D221DgaTgaC11A.270.001656
ORF1ab/nsp12221D221CGAtTGt11All0
ORF1ab/nsp12221D221KGaTAaA11All0
ORF1ab/nsp12221D221XGaTTaA11All0
ORF1ab/nsp12221D221VgAtgTt11AY.1030.000006
ORF1ab/nsp12221D221DgaTgaC11AY.1050.000643
ORF1ab/nsp12221D221DgaTgaC11AY.1080.001103
ORF1ab/nsp12221D221DgaTgaC11AY.1170.000085
ORF1ab/nsp12221D221DgaTgaC11AY.1180.000063
ORF1ab/nsp12221D221DgaTgaC11AY.1190.000035
ORF1ab/nsp12221D221DgaTgaC11AY.120.000316
ORF1ab/nsp12221D221delGAT---11AY.1200.000037
ORF1ab/nsp12221D221GgAtgGt11AY.16.10.00047
ORF1ab/nsp12221D221DgaTgaC11AY.190.00114
ORF1ab/nsp12221D221DgaTgaC11AY.210.001898
ORF1ab/nsp12221D221DgaTgaC11AY.230.00007
ORF1ab/nsp12221D221YGatTat11AY.250.000006
ORF1ab/nsp12221D221DgaTgaC11AY.270.000065
ORF1ab/nsp12221D221DgaTgaC11AY.29.10.000221
ORF1ab/nsp12221D221DgaTgaC11AY.320.000532
ORF1ab/nsp12221D221DgaTgaC11AY.330.000067
ORF1ab/nsp12221D221DgaTgaC11AY.34.10.00051
ORF1ab/nsp12221D221VgAtgTt11AY.40.000002
ORF1ab/nsp12221D221DgaTgaC11AY.400.000964
ORF1ab/nsp12221D221NGatAat11AY.440.000006
ORF1ab/nsp12221D221YGatTat11AY.440.000006
ORF1ab/nsp12221D221DgaTgaC11AY.46.20.000635
ORF1ab/nsp12221D221delGAT---11AY.5.30.000337
ORF1ab/nsp12221D221delGAT---11AY.650.000533
ORF1ab/nsp12221D221HGatCat11AY.660.00107
ORF1ab/nsp12221D221DgaTgaC11AY.670.000464
ORF1ab/nsp12221D221DgaTgaC11AY.700.000209
ORF1ab/nsp12221D221DgaTgaC11AY.750.000056
ORF1ab/nsp12221D221delGAT---11AY.80.000606
ORF1ab/nsp12221D221DgaTgaC11AY.890.004902
ORF1ab/nsp12221D221DgaTgaC11AY.920.000287
ORF1ab/nsp12221D221DgaTgaC11AY.980.000079
ORF1ab/nsp12221D221DgaTgaC11AY.98.10.000048
ORF1ab/nsp12221D221DgaTgaC11B0.000128
ORF1ab/nsp12221D221del1gaTga-11B.10.000009
ORF1ab/nsp12221D221delGAT---11B.1.10.000018
ORF1ab/nsp12221D221delGAT---11B.1.1.10.000327
ORF1ab/nsp12221D221DgaTgaC11B.1.1.2690.001353
ORF1ab/nsp12221D221DgaTgaC11B.1.1.280.000311
ORF1ab/nsp12221D221DgaTgaC11B.1.1.2910.000742
ORF1ab/nsp12221D221DgaTgaC11B.1.1.3060.000438
ORF1ab/nsp12221D221DgaTgaC11B.1.1.370.000193
ORF1ab/nsp12221D221CGAtTGt11B.1.1.4090.002833
ORF1ab/nsp12221D221DgaTgaC11B.1.1.4160.000905
ORF1ab/nsp12221D221EgaTgaA11B.1.1.70.000001
ORF1ab/nsp12221D221YGatTat11B.1.1.70.000001
ORF1ab/nsp12221D221del1gaTga-11B.1.1.70.000001
ORF1ab/nsp12221D221NGatAat11B.1.1.70.000001
ORF1ab/nsp12221D221KGaTAaA11B.1.1.70.000001
ORF1ab/nsp12221D221del1Gat-at11B.1.1770.000013
ORF1ab/nsp12221D221YGatTat11B.1.177.230.003236
ORF1ab/nsp12221D221DgaTgaC11B.1.177.600.000218
ORF1ab/nsp12221D221DgaTgaC11B.1.177.810.000189
ORF1ab/nsp12221D221DgaTgaC11B.1.177.870.000728
ORF1ab/nsp12221D221delGAT---11B.1.20.000009
ORF1ab/nsp12221D221HGatCat11B.1.20.000009
ORF1ab/nsp12221D221DgaTgaC11B.1.2400.000216
ORF1ab/nsp12221D221DgaTgaC11B.1.3110.000275
ORF1ab/nsp12221D221DgaTgaC11B.1.36.100.004785
ORF1ab/nsp12221D221YGatTat11B.1.3690.000285
ORF1ab/nsp12221D221DgaTgaC11B.1.4560.003268
ORF1ab/nsp12221D221DgaTgaC11B.1.4970.000315
ORF1ab/nsp12221D221GgAtgGt11B.1.5090.000866
ORF1ab/nsp12221D221del1gaTga-11B.1.5260.000024
ORF1ab/nsp12221D221DgaTgaC11B.1.5880.00091
ORF1ab/nsp12221D221del1GAt-Tt11B.1.5960.000087
ORF1ab/nsp12221D221VgAtgTt11B.1.5960.000087
ORF1ab/nsp12221D221DgaTgaC11B.1.5960.000087
ORF1ab/nsp12221D221YGatTat11B.1.617.20.000004
ORF1ab/nsp12221D221DgaTgaC11B.1.810.021277
ORF1ab/nsp12221D221VgAtgTt11B.400.000364
ORF1ab/nsp12221D221YGatTat11B.6.60.000889
ORF1ab/nsp12221D221DgaTgaC11C.37.10.002618
ORF1ab/nsp12221D221DgaTgaC11D.20.000075
ORF1ab/nsp12221D221HGatCat11D.20.000075
ORF1ab/nsp12221D221YGatTat11D.20.000075
ORF1ab/nsp12221D221DgaTgaC11P.1.140.000048