CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 220

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12220G220GG4612GsynggTggC4474320.96644314098-14100
ORF1ab/nsp12220G220GG4612GsynggTggA447130.029082814098-14100
ORF1ab/nsp12220G220GG4612GsynggTggG44720.0044742714098-14100
ORF1ab/nsp12220G220VG4612VnonsyngGtgTt25230.9214098-14100
ORF1ab/nsp12220G220VG4612VnonsyngGTgTA2510.0414098-14100
ORF1ab/nsp12220G220VG4612VnonsyngGTgTG2510.0414098-14100
ORF1ab/nsp12220G220CG4612CnonsynGgtTgt1818114098-14100
ORF1ab/nsp12220G220delG4612deldelGGT---1717114098-14100
ORF1ab/nsp12220G220RG4612RnonsynGgtCgt1180.72727314098-14100
ORF1ab/nsp12220G220RG4612RnonsynGgTAgG1120.18181814098-14100
ORF1ab/nsp12220G220RG4612RnonsynGgTAgA1110.090909114098-14100
ORF1ab/nsp12220G220AG4612AnonsyngGtgCt77114098-14100
ORF1ab/nsp12220G220SG4612SnonsynGgtAgt66114098-14100
ORF1ab/nsp12220G220del1G4612del1delGgt-gt530.614098-14100
ORF1ab/nsp12220G220del1G4612del1delGgT-gC510.214098-14100
ORF1ab/nsp12220G220del1G4612del1delggTgg-510.214098-14100
ORF1ab/nsp12220G220DG4612DnonsyngGtgAt22114098-14100
ORF1ab/nsp12220G220IG4612InonsynGGtATt210.514098-14100
ORF1ab/nsp12220G220IG4612InonsynGGTATA210.514098-14100
ORF1ab/nsp12220G220MG4612MnonsynGGTATG11114098-14100
ORF1ab/nsp12220G220del2G4612del2delGGt--t11114098-14100

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12220G220GggTggC432447All0.000083
ORF1ab/nsp12220G220GggTggA13447All0.000002
ORF1ab/nsp12220G220GggTggG2447All0
ORF1ab/nsp12220G220GggTggC204204B.1.6100.723404
ORF1ab/nsp12220G220VgGtgTt2325All0.000004
ORF1ab/nsp12220G220VgGTgTG125All0
ORF1ab/nsp12220G220VgGTgTA125All0
ORF1ab/nsp12220G220GggTggC2323B.1.10.000417
ORF1ab/nsp12220G220CGgtTgt1818All0.000003
ORF1ab/nsp12220G220delGGT---1717All0.000003
ORF1ab/nsp12220G220GggTggC1616B.1.4270.000808
ORF1ab/nsp12220G220GggTggC1115B.1.1.70.00001
ORF1ab/nsp12220G220GggTggA415B.1.1.70.000004
ORF1ab/nsp12220G220GggTggC1515B.1.5250.001697
ORF1ab/nsp12220G220GggTggC1414P.20.002613
ORF1ab/nsp12220G220GggTggC1212AY.46.50.002381
ORF1ab/nsp12220G220GggTggC912B.1.617.20.000034
ORF1ab/nsp12220G220GggTggA312B.1.617.20.000011
ORF1ab/nsp12220G220RGgtCgt811All0.000002
ORF1ab/nsp12220G220RGgTAgG211All0
ORF1ab/nsp12220G220RGgTAgA111All0
ORF1ab/nsp12220G220GggTggC1111AY.40.000017
ORF1ab/nsp12220G220GggTggC89AY.1030.00005
ORF1ab/nsp12220G220GggTggA19AY.1030.000006
ORF1ab/nsp12220G220GggTggC78B.10.000064
ORF1ab/nsp12220G220GggTggA18B.10.000009
ORF1ab/nsp12220G220GggTggC88B.1.1.3160.007401
ORF1ab/nsp12220G220GggTggC88B.1.5610.003176
ORF1ab/nsp12220G220AgGtgCt77All0.000001
ORF1ab/nsp12220G220GggTggC77AY.150.015556
ORF1ab/nsp12220G220CGgtTgt77B.1.1.70.000006
ORF1ab/nsp12220G220GggTggC77B.1.1600.000218
ORF1ab/nsp12220G220SGgtAgt66All0.000001
ORF1ab/nsp12220G220GggTggC66B.1.360.000875
ORF1ab/nsp12220G220del1Ggt-gt35All0.000001
ORF1ab/nsp12220G220del1ggTgg-15All0
ORF1ab/nsp12220G220del1GgT-gC15All0
ORF1ab/nsp12220G220VgGtgTt55B.1.1.70.000004
ORF1ab/nsp12220G220delGGT---55B.1.1.70.000004
ORF1ab/nsp12220G220GggTggC55B.1.20.000044
ORF1ab/nsp12220G220GggTggC55P.10.000079
ORF1ab/nsp12220G220GggTggC44AY.440.000024
ORF1ab/nsp12220G220VgGtgTt44D.20.0003
ORF1ab/nsp12220G220GggTggG230.111111
ORF1ab/nsp12220G220RGgTAgG230.111111
ORF1ab/nsp12220G220GggTggA130.055556
ORF1ab/nsp12220G220RGgTAgA130.055556
ORF1ab/nsp12220G220VgGTgTA130.055556
ORF1ab/nsp12220G220VgGTgTG130.055556
ORF1ab/nsp12220G220VgGtgTt130.055556
ORF1ab/nsp12220G220GggTggC33AY.30.00003
ORF1ab/nsp12220G220GggTggA33AY.3.10.000256
ORF1ab/nsp12220G220VgGtgTt33AY.40.000005
ORF1ab/nsp12220G220GggTggC33B.1.1.5190.000119
ORF1ab/nsp12220G220SGgtAgt220.111111
ORF1ab/nsp12220G220IGGtATt120.055556
ORF1ab/nsp12220G220IGGTATA120.055556
ORF1ab/nsp12220G220DgGtgAt22All0
ORF1ab/nsp12220G220IGGtATt12All0
ORF1ab/nsp12220G220IGGTATA12All0
ORF1ab/nsp12220G220GggTggC22AY.120.000632
ORF1ab/nsp12220G220GggTggC22AY.46.60.000144
ORF1ab/nsp12220G220delGGT---22B.10.000018
ORF1ab/nsp12220G220SGgtAgt22B.1.10.000036
ORF1ab/nsp12220G220GggTggC22B.1.1770.000026
ORF1ab/nsp12220G220RGgtCgt22B.1.20.000018
ORF1ab/nsp12220G220CGgtTgt22B.1.20.000018
ORF1ab/nsp12220G220del1ggTgg-12B.1.20.000009
ORF1ab/nsp12220G220del1Ggt-gt12B.1.20.000009
ORF1ab/nsp12220G220GggTggC22B.1.3510.000059
ORF1ab/nsp12220G220delGGT---22B.1.5250.000226
ORF1ab/nsp12220G220GggTggC22B.1.617.10.000258
ORF1ab/nsp12220G220GggTggC22B.1.619.10.001283
ORF1ab/nsp12220G220GggTggC22B.1.6370.000146
ORF1ab/nsp12220G220MGGTATG110.055556
ORF1ab/nsp12220G220MGGTATG11All0
ORF1ab/nsp12220G220del2GGt--t11All0
ORF1ab/nsp12220G220VgGtgTt11AY.1000.000046
ORF1ab/nsp12220G220GggTggC11AY.1020.000027
ORF1ab/nsp12220G220CGgtTgt11AY.1030.000006
ORF1ab/nsp12220G220GggTggC11AY.1180.000063
ORF1ab/nsp12220G220GggTggC11AY.1190.000035
ORF1ab/nsp12220G220GggTggC11AY.1200.000037
ORF1ab/nsp12220G220delGGT---11AY.1200.000037
ORF1ab/nsp12220G220GggTggC11AY.130.000161
ORF1ab/nsp12220G220GggTggC11AY.250.000006
ORF1ab/nsp12220G220GggTggC11AY.330.000067
ORF1ab/nsp12220G220delGGT---11AY.39.10.00004
ORF1ab/nsp12220G220VgGtgTt11AY.39.10.00004
ORF1ab/nsp12220G220SGgtAgt11AY.430.000004
ORF1ab/nsp12220G220GggTggC11AY.430.000004
ORF1ab/nsp12220G220GggTggC11AY.50.000021
ORF1ab/nsp12220G220delGGT---11AY.5.30.000337
ORF1ab/nsp12220G220GggTggC11AY.540.000095
ORF1ab/nsp12220G220GggTggC11AY.550.000917
ORF1ab/nsp12220G220delGGT---11AY.650.000533
ORF1ab/nsp12220G220delGGT---11AY.80.000606
ORF1ab/nsp12220G220GggTggC11AY.980.000079
ORF1ab/nsp12220G220GggTggC11B0.000128
ORF1ab/nsp12220G220VgGtgTt11B.10.000009
ORF1ab/nsp12220G220RGgtCgt11B.10.000009
ORF1ab/nsp12220G220CGgtTgt11B.10.000009
ORF1ab/nsp12220G220del1Ggt-gt11B.1.10.000018
ORF1ab/nsp12220G220DgGtgAt11B.1.10.000018
ORF1ab/nsp12220G220delGGT---11B.1.10.000018
ORF1ab/nsp12220G220RGgtCgt11B.1.10.000018
ORF1ab/nsp12220G220AgGtgCt11B.1.10.000018
ORF1ab/nsp12220G220CGgtTgt11B.1.10.000018
ORF1ab/nsp12220G220delGGT---11B.1.1.10.000327
ORF1ab/nsp12220G220GggTggC11B.1.1.1610.003534
ORF1ab/nsp12220G220GggTggC11B.1.1.2140.000055
ORF1ab/nsp12220G220GggTggC11B.1.1.2690.001353
ORF1ab/nsp12220G220RGgtCgt11B.1.1.3160.000925
ORF1ab/nsp12220G220RGgtCgt11B.1.1.3720.000689
ORF1ab/nsp12220G220del1GgT-gC11B.1.1.4090.002833
ORF1ab/nsp12220G220GggTggC11B.1.1.630.000386
ORF1ab/nsp12220G220RGgtCgt11B.1.1.70.000001
ORF1ab/nsp12220G220del2GGt--t11B.1.1.70.000001
ORF1ab/nsp12220G220del1Ggt-gt11B.1.1.70.000001
ORF1ab/nsp12220G220CGgtTgt11B.1.1280.000635
ORF1ab/nsp12220G220VgGtgTt11B.1.1600.000031
ORF1ab/nsp12220G220AgGtgCt11B.1.1600.000031
ORF1ab/nsp12220G220VgGtgTt11B.1.1770.000013
ORF1ab/nsp12220G220VgGtgTt11B.1.177.120.000152
ORF1ab/nsp12220G220GggTggC11B.1.177.200.001517
ORF1ab/nsp12220G220AgGtgCt11B.1.177.70.000165
ORF1ab/nsp12220G220VgGtgTt11B.1.177.80.000752
ORF1ab/nsp12220G220SGgtAgt11B.1.20.000009
ORF1ab/nsp12220G220delGGT---11B.1.20.000009
ORF1ab/nsp12220G220VgGtgTt11B.1.20.000009
ORF1ab/nsp12220G220CGgtTgt11B.1.2210.000071
ORF1ab/nsp12220G220GggTggC11B.1.2340.000132
ORF1ab/nsp12220G220VgGtgTt11B.1.2580.000067
ORF1ab/nsp12220G220GggTggC11B.1.2580.000067
ORF1ab/nsp12220G220GggTggC11B.1.351.50.0006
ORF1ab/nsp12220G220GggTggC11B.1.36.180.00042
ORF1ab/nsp12220G220GggTggC11B.1.36.70.004
ORF1ab/nsp12220G220GggTggC11B.1.3930.028571
ORF1ab/nsp12220G220AgGtgCt11B.1.416.10.001563
ORF1ab/nsp12220G220CGgtTgt11B.1.4290.000024
ORF1ab/nsp12220G220GggTggC11B.1.4360.001029
ORF1ab/nsp12220G220GggTggC11B.1.4590.004082
ORF1ab/nsp12220G220CGgtTgt11B.1.466.20.000391
ORF1ab/nsp12220G220DgGtgAt11B.1.5260.000024
ORF1ab/nsp12220G220GggTggC11B.1.564.10.001577
ORF1ab/nsp12220G220AgGtgCt11B.1.5800.004065
ORF1ab/nsp12220G220AgGtgCt11B.1.5950.000261
ORF1ab/nsp12220G220VgGtgTt11B.1.5960.000087
ORF1ab/nsp12220G220GggTggC11B.1.6210.000089
ORF1ab/nsp12220G220GggTggC11B.1.6280.000352
ORF1ab/nsp12220G220GggTggC11B.550.00295
ORF1ab/nsp12220G220CGgtTgt11C.300.001727
ORF1ab/nsp12220G220GggTggC11D.20.000075
ORF1ab/nsp12220G220CGgtTgt11D.20.000075
ORF1ab/nsp12220G220RGgtCgt11D.20.000075
ORF1ab/nsp12220G220AgGtgCt11D.20.000075
ORF1ab/nsp12220G220GggTggC11P.1.120.000484