CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 205 | L205L | L4597L | syn | ctG | ctT | 6488 | 5113 | 0.78807 | 14053-14055 |
ORF1ab/nsp12 | 205 | L205L | L4597L | syn | Ctg | Ttg | 6488 | 988 | 0.152281 | 14053-14055 |
ORF1ab/nsp12 | 205 | L205L | L4597L | syn | ctG | ctA | 6488 | 242 | 0.0372996 | 14053-14055 |
ORF1ab/nsp12 | 205 | L205L | L4597L | syn | ctG | ctC | 6488 | 145 | 0.022349 | 14053-14055 |
ORF1ab/nsp12 | 205 | L205del | L4597del | del | CTG | --- | 31 | 31 | 1 | 14053-14055 |
ORF1ab/nsp12 | 205 | L205M | L4597M | nonsyn | Ctg | Atg | 22 | 22 | 1 | 14053-14055 |
ORF1ab/nsp12 | 205 | L205P | L4597P | nonsyn | cTg | cCg | 8 | 8 | 1 | 14053-14055 |
ORF1ab/nsp12 | 205 | L205V | L4597V | nonsyn | Ctg | Gtg | 3 | 3 | 1 | 14053-14055 |
ORF1ab/nsp12 | 205 | L205R | L4597R | nonsyn | cTg | cGg | 2 | 1 | 0.5 | 14053-14055 |
ORF1ab/nsp12 | 205 | L205R | L4597R | nonsyn | cTG | cGA | 2 | 1 | 0.5 | 14053-14055 |
ORF1ab/nsp12 | 205 | L205S | L4597S | nonsyn | CTg | TCg | 1 | 1 | 1 | 14053-14055 |
ORF1ab/nsp12 | 205 | L205del2 | L4597del2 | del | cTG | c-- | 1 | 1 | 1 | 14053-14055 |
ORF1ab/nsp12 | 205 | L205Q | L4597Q | nonsyn | cTg | cAg | 1 | 1 | 1 | 14053-14055 |
ORF1ab/nsp12 | 205 | L205del1 | L4597del1 | del | cTg | c-g | 1 | 1 | 1 | 14053-14055 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 5113 | 6488 | All | 0.000978 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 988 | 6488 | All | 0.000189 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 242 | 6488 | All | 0.000046 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctC | 145 | 6488 | All | 0.000028 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 776 | 1440 | B.1.1.7 | 0.000695 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 656 | 1440 | B.1.1.7 | 0.000587 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 6 | 1440 | B.1.1.7 | 0.000005 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctC | 2 | 1440 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1042 | 1043 | AY.92 | 0.299339 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctC | 1 | 1043 | AY.92 | 0.000287 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 484 | 484 | B.1.1.170 | 0.603491 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 337 | 399 | AY.4 | 0.000525 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 38 | 399 | AY.4 | 0.000059 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 18 | 399 | AY.4 | 0.000028 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctC | 6 | 399 | AY.4 | 0.000009 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 293 | 293 | B.1.110.3 | 0.210489 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 240 | 240 | B.1.243 | 0.0167 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 208 | 238 | B.1.617.2 | 0.000783 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 19 | 238 | B.1.617.2 | 0.000072 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 11 | 238 | B.1.617.2 | 0.000041 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctC | 116 | 206 | AY.103 | 0.00072 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 86 | 206 | AY.103 | 0.000534 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 2 | 206 | AY.103 | 0.000012 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 2 | 206 | AY.103 | 0.000012 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 177 | 183 | P.1 | 0.002788 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 4 | 183 | P.1 | 0.000063 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 2 | 183 | P.1 | 0.000032 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 160 | 161 | AY.4.2 | 0.00347 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 161 | AY.4.2 | 0.000022 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 105 | 134 | AY.43 | 0.000465 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 25 | 134 | AY.43 | 0.000111 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctC | 2 | 134 | AY.43 | 0.000009 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 2 | 134 | AY.43 | 0.000009 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 91 | 122 | AY.44 | 0.000554 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 26 | 122 | AY.44 | 0.000158 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 4 | 122 | AY.44 | 0.000024 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctC | 1 | 122 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 74 | 96 | B.1.2 | 0.000652 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 22 | 96 | B.1.2 | 0.000194 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 74 | 82 | AY.25 | 0.000445 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 6 | 82 | AY.25 | 0.000036 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 2 | 82 | AY.25 | 0.000012 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 67 | 77 | B.1.177 | 0.000882 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 7 | 77 | B.1.177 | 0.000092 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctC | 3 | 77 | B.1.177 | 0.00004 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 68 | 68 | AY.110 | 0.007663 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 66 | 67 | B.1.240 | 0.014227 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 67 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 55 | 62 | B.1 | 0.000504 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctC | 4 | 62 | B.1 | 0.000037 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 3 | 62 | B.1 | 0.000027 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 60 | 61 | B.1.1.519 | 0.002383 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 61 | B.1.1.519 | 0.00004 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 59 | 59 | B.1.1.222 | 0.012036 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 57 | 57 | AY.36 | 0.008448 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 43 | 56 | AY.100 | 0.001978 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 12 | 56 | AY.100 | 0.000552 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 1 | 56 | AY.100 | 0.000046 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 37 | 43 | AY.3 | 0.000368 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 4 | 43 | AY.3 | 0.00004 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 2 | 43 | AY.3 | 0.00002 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 39 | 39 | AY.46.4 | 0.006416 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 33 | 37 | B.1.1 | 0.000599 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 2 | 37 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 2 | 37 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 31 | 32 | B.1.351 | 0.000922 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 1 | 32 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 205 | L205del | CTG | --- | 31 | 31 | All | 0.000006 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 25 | 26 | AY.5 | 0.000516 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 26 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 17 | 25 | Q.8 | 0.002803 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 8 | 25 | Q.8 | 0.001319 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 22 | 24 | AY.39 | 0.000544 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 2 | 24 | AY.39 | 0.000049 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 22 | 23 | B.1.221 | 0.001563 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 23 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 13 | 23 | B.1.429 | 0.000306 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 7 | 23 | B.1.429 | 0.000165 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 3 | 23 | B.1.429 | 0.000071 |
ORF1ab/nsp12 | 205 | L205M | Ctg | Atg | 22 | 22 | All | 0.000004 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 21 | 22 | B.1.596 | 0.00183 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 22 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 20 | 20 | AY.6 | 0.000823 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 19 | 19 | P.1.14 | 0.000908 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 18 | 18 | B.1.1.459 | 0.276923 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 17 | 17 | AY.102 | 0.000451 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 7 | 13 | AY.20 | 0.000272 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 5 | 13 | AY.20 | 0.000194 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 13 | AY.20 | 0.000039 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 8 | 13 | B.1.160 | 0.00025 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 3 | 13 | B.1.160 | 0.000094 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 2 | 13 | B.1.160 | 0.000062 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 12 | 12 | B.1.36 | 0.001751 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 9 | 11 | AY.45 | 0.001095 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 1 | 11 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctC | 1 | 11 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 11 | 11 | B.1.177.56 | 0.007343 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 11 | 11 | B.1.525 | 0.001245 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 9 | 10 | AY.120 | 0.000335 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 10 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 10 | 10 | AY.75 | 0.00056 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 8 | 10 | B.1.1.1 | 0.002614 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 2 | 10 | B.1.1.1 | 0.000653 |
ORF1ab/nsp12 | 205 | L205del | CTG | --- | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 10 | 10 | B.1.234 | 0.001319 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctC | 6 | 10 | B.1.575 | 0.00182 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 4 | 10 | B.1.575 | 0.001214 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 9 | 9 | AY.7.1 | 0.001014 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 9 | 9 | B.1.160.16 | 0.008364 |
ORF1ab/nsp12 | 205 | L205P | cTg | cCg | 8 | 8 | All | 0.000002 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 7 | 8 | AY.29 | 0.00011 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 8 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 5 | 8 | AY.47 | 0.000156 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 3 | 8 | AY.47 | 0.000093 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 8 | 8 | B | 0.001022 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 8 | 8 | B.1.617.1 | 0.001032 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 7 | 7 | AD.2 | 0.001533 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 7 | 7 | AY.114 | 0.001618 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 7 | 7 | AY.42 | 0.000282 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 7 | 7 | AY.98.1 | 0.000339 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 4 | 7 | B.1.526 | 0.000094 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 3 | 7 | B.1.526 | 0.000071 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 4 | 6 | AY.117 | 0.000338 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 2 | 6 | AY.117 | 0.000169 |
ORF1ab/nsp12 | 205 | L205del | CTG | --- | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 6 | 6 | AY.65 | 0.003198 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 6 | 6 | B.1.177.21 | 0.000459 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 6 | 6 | B.3.1 | 0.00995 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 5 | 5 | AY.5.3 | 0.001687 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 5 | 5 | B.41 | 0.04 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 4 | 4 | AY.12 | 0.001264 |
ORF1ab/nsp12 | 205 | L205M | Ctg | Atg | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp12 | 205 | L205M | Ctg | Atg | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 4 | 4 | AY.60 | 0.003752 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 3 | 4 | AY.98 | 0.000237 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 4 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 3 | 4 | B.1.1.28 | 0.000934 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 4 | B.1.1.28 | 0.000311 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 4 | 4 | B.1.139 | 0.002933 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 4 | 4 | B.1.420 | 0.041667 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp12 | 205 | L205V | Ctg | Gtg | 3 | 3 | All | 0.000001 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 3 | AY.32 | 0.001065 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 3 | AY.32 | 0.000532 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 3 | 3 | AY.63 | 0.001161 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 3 | AY.70 | 0.000417 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 3 | AY.70 | 0.000209 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 3 | 3 | AY.78 | 0.004622 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp12 | 205 | L205M | Ctg | Atg | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 2 | 3 | B.1.560 | 0.009259 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 1 | 3 | B.1.560 | 0.00463 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 3 | B.1.609 | 0.000959 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 3 | B.1.609 | 0.000479 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 2 | 2 | AE.5 | 0.037037 |
ORF1ab/nsp12 | 205 | L205R | cTg | cGg | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 205 | L205R | cTG | cGA | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 1 | 2 | AY.85 | 0.000427 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 2 | AY.85 | 0.000427 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | AY.91.1 | 0.00813 |
ORF1ab/nsp12 | 205 | L205del | CTG | --- | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | B.1.1.291 | 0.001485 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | B.1.115 | 0.043478 |
ORF1ab/nsp12 | 205 | L205M | Ctg | Atg | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | B.1.213 | 0.029851 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 2 | 2 | B.1.221.1 | 0.005814 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 2 | B.1.36.29 | 0.000517 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 1 | 2 | B.1.36.29 | 0.000517 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | B.1.371 | 0.002245 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | B.1.408 | 0.00738 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | B.1.453 | 0.006472 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 2 | 2 | B.1.465 | 0.007605 |
ORF1ab/nsp12 | 205 | L205del | CTG | --- | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | B.1.538 | 0.016129 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 2 | 2 | Q.2 | 0.001227 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 205 | L205del2 | cTG | c-- | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 205 | L205S | CTg | TCg | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 205 | L205del1 | cTg | c-g | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 205 | L205Q | cTg | cAg | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 205 | L205P | cTg | cCg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp12 | 205 | L205del | CTG | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp12 | 205 | L205M | Ctg | Atg | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp12 | 205 | L205M | Ctg | Atg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 205 | L205S | CTg | TCg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 205 | L205del | CTG | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp12 | 205 | L205del2 | cTG | c-- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 205 | L205R | cTG | cGA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp12 | 205 | L205P | cTg | cCg | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp12 | 205 | L205M | Ctg | Atg | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 205 | L205del | CTG | --- | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp12 | 205 | L205M | Ctg | Atg | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp12 | 205 | L205V | Ctg | Gtg | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp12 | 205 | L205del | CTG | --- | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp12 | 205 | L205del | CTG | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 205 | L205del1 | cTg | c-g | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 205 | L205M | Ctg | Atg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 205 | L205M | Ctg | Atg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 205 | L205del | CTG | --- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctC | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.1.208 | 0.012195 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.1.332 | 0.03125 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.1.34 | 0.013158 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctC | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp12 | 205 | L205del | CTG | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 1 | B.1.1.41 | 0.006329 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.1.500 | 0.02 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp12 | 205 | L205P | cTg | cCg | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp12 | 205 | L205V | Ctg | Gtg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 205 | L205P | cTg | cCg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.1.75 | 0.010638 |
ORF1ab/nsp12 | 205 | L205P | cTg | cCg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp12 | 205 | L205P | cTg | cCg | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp12 | 205 | L205R | cTg | cGg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 205 | L205del | CTG | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp12 | 205 | L205M | Ctg | Atg | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.36.28 | 0.005747 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp12 | 205 | L205M | Ctg | Atg | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 205 | L205P | cTg | cCg | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 1 | B.1.437 | 0.020833 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctA | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.549 | 0.007194 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp12 | 205 | L205M | Ctg | Atg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.601 | 0.030303 |
ORF1ab/nsp12 | 205 | L205Q | cTg | cAg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 205 | L205del | CTG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp12 | 205 | L205del | CTG | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp12 | 205 | L205del | CTG | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctC | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp12 | 205 | L205L | Ctg | Ttg | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 205 | L205P | cTg | cCg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 205 | L205V | Ctg | Gtg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp12 | 205 | L205L | ctG | ctT | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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