CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 202 & Codon = gtC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12202V202VV4594VsyngtTgtC183890.48633914044-14046

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12202V202VgtTgtC89183All0.000017
ORF1ab/nsp12202V202VgtTgtC2527AY.40.000039
ORF1ab/nsp12202V202VgtTgtC819B.1.1.70.000007
ORF1ab/nsp12202V202VgtTgtC88B.1.2580.000532
ORF1ab/nsp12202V202VgtTgtC45B.1.617.20.000015
ORF1ab/nsp12202V202VgtTgtC44AY.140.000352
ORF1ab/nsp12202V202VgtTgtC14AY.50.000021
ORF1ab/nsp12202V202VgtTgtC34B.10.000027
ORF1ab/nsp12202V202VgtTgtC24B.1.5260.000047
ORF1ab/nsp12202V202VgtTgtC33AY.46.40.000494
ORF1ab/nsp12202V202VgtTgtC33AY.750.000168
ORF1ab/nsp12202V202VgtTgtC13B.1.1600.000031
ORF1ab/nsp12202V202VgtTgtC23B.1.1770.000026
ORF1ab/nsp12202V202VgtTgtC23B.1.20.000018
ORF1ab/nsp12202V202VgtTgtC22AY.300.000791
ORF1ab/nsp12202V202VgtTgtC22AY.390.000049
ORF1ab/nsp12202V202VgtTgtC22AY.4.20.000043
ORF1ab/nsp12202V202VgtTgtC22AY.420.00008
ORF1ab/nsp12202V202VgtTgtC22AY.430.000009
ORF1ab/nsp12202V202VgtTgtC22B.1.177.870.001456
ORF1ab/nsp12202V202VgtTgtC11AY.1030.000006
ORF1ab/nsp12202V202VgtTgtC11AY.1060.000335
ORF1ab/nsp12202V202VgtTgtC11AY.1180.000063
ORF1ab/nsp12202V202VgtTgtC11AY.1200.000037
ORF1ab/nsp12202V202VgtTgtC11AY.290.000016
ORF1ab/nsp12202V202VgtTgtC11AY.570.000656
ORF1ab/nsp12202V202VgtTgtC11B.1.1.2140.000055
ORF1ab/nsp12202V202VgtTgtC11B.1.177.600.000218
ORF1ab/nsp12202V202VgtTgtC11B.1.36.160.001425
ORF1ab/nsp12202V202VgtTgtC11B.1.4780.011765
ORF1ab/nsp12202V202VgtTgtC11B.1.619.10.000641

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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