CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 202

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12202V202VV4594VsyngtTgtC183890.48633914044-14046
ORF1ab/nsp12202V202VV4594VsyngtTgtA183720.39344314044-14046
ORF1ab/nsp12202V202VV4594VsyngtTgtG183220.12021914044-14046
ORF1ab/nsp12202V202AV4594AnonsyngTtgCt5252114044-14046
ORF1ab/nsp12202V202IV4594InonsynGttAtt4949114044-14046
ORF1ab/nsp12202V202delV4594deldelGTT---1818114044-14046
ORF1ab/nsp12202V202FV4594FnonsynGttTtt1414114044-14046
ORF1ab/nsp12202V202del1V4594del1delgTtg-t540.814044-14046
ORF1ab/nsp12202V202del1V4594del1delGtt-tt510.214044-14046
ORF1ab/nsp12202V202CV4594CnonsynGTtTGt44114044-14046
ORF1ab/nsp12202V202LV4594LnonsynGttCtt44114044-14046
ORF1ab/nsp12202V202GV4594GnonsyngTtgGt22114044-14046
ORF1ab/nsp12202V202del2V4594del2delgTTg--11114044-14046

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12202V202VgtTgtC89183All0.000017
ORF1ab/nsp12202V202VgtTgtA72183All0.000014
ORF1ab/nsp12202V202VgtTgtG22183All0.000004
ORF1ab/nsp12202V202AgTtgCt5252All0.00001
ORF1ab/nsp12202V202IGttAtt4949All0.000009
ORF1ab/nsp12202V202VgtTgtC2527AY.40.000039
ORF1ab/nsp12202V202VgtTgtA227AY.40.000003
ORF1ab/nsp12202V202VgtTgtA1119B.1.1.70.00001
ORF1ab/nsp12202V202VgtTgtC819B.1.1.70.000007
ORF1ab/nsp12202V202delGTT---1818All0.000003
ORF1ab/nsp12202V202VgtTgtA1717AY.340.001648
ORF1ab/nsp12202V202VgtTgtA1717B.1.4290.0004
ORF1ab/nsp12202V202FGttTtt1414All0.000003
ORF1ab/nsp12202V202AgTtgCt1313B.1.1.70.000012
ORF1ab/nsp12202V202VgtTgtG1212AY.30.000119
ORF1ab/nsp12202V202IGttAtt99AY.40.000014
ORF1ab/nsp12202V202AgTtgCt99B.1.177.620.010727
ORF1ab/nsp12202V202delGTT---88B.1.1.70.000007
ORF1ab/nsp12202V202VgtTgtC88B.1.2580.000532
ORF1ab/nsp12202V202VgtTgtA66AY.870.004996
ORF1ab/nsp12202V202AgTtgCt66B.1.617.20.000023
ORF1ab/nsp12202V202del1gTtg-t45All0.000001
ORF1ab/nsp12202V202del1Gtt-tt15All0
ORF1ab/nsp12202V202AgTtgCt55AY.1020.000133
ORF1ab/nsp12202V202IGttAtt55B.1.4760.5
ORF1ab/nsp12202V202VgtTgtC45B.1.617.20.000015
ORF1ab/nsp12202V202VgtTgtG15B.1.617.20.000004
ORF1ab/nsp12202V202CGTtTGt44All0.000001
ORF1ab/nsp12202V202LGttCtt44All0.000001
ORF1ab/nsp12202V202IGttAtt44AY.1030.000025
ORF1ab/nsp12202V202VgtTgtC44AY.140.000352
ORF1ab/nsp12202V202CGTtTGt44AY.30.00004
ORF1ab/nsp12202V202IGttAtt44AY.4.40.001637
ORF1ab/nsp12202V202VgtTgtA24AY.50.000041
ORF1ab/nsp12202V202VgtTgtC14AY.50.000021
ORF1ab/nsp12202V202VgtTgtG14AY.50.000021
ORF1ab/nsp12202V202AgTtgCt44AY.780.006163
ORF1ab/nsp12202V202FGttTtt44B.10.000037
ORF1ab/nsp12202V202VgtTgtC34B.10.000027
ORF1ab/nsp12202V202VgtTgtA14B.10.000009
ORF1ab/nsp12202V202IGttAtt44B.1.1770.000053
ORF1ab/nsp12202V202VgtTgtA24B.1.5260.000047
ORF1ab/nsp12202V202VgtTgtC24B.1.5260.000047
ORF1ab/nsp12202V202VgtTgtG33AY.200.000117
ORF1ab/nsp12202V202VgtTgtC33AY.46.40.000494
ORF1ab/nsp12202V202VgtTgtA33AY.610.000314
ORF1ab/nsp12202V202VgtTgtC33AY.750.000168
ORF1ab/nsp12202V202VgtTgtA23B.1.1600.000062
ORF1ab/nsp12202V202VgtTgtC13B.1.1600.000031
ORF1ab/nsp12202V202VgtTgtC23B.1.1770.000026
ORF1ab/nsp12202V202VgtTgtA13B.1.1770.000013
ORF1ab/nsp12202V202AgTtgCt33B.1.20.000026
ORF1ab/nsp12202V202VgtTgtC23B.1.20.000018
ORF1ab/nsp12202V202VgtTgtG13B.1.20.000009
ORF1ab/nsp12202V202GgTtgGt22All0
ORF1ab/nsp12202V202AgTtgCt22AY.1030.000012
ORF1ab/nsp12202V202IGttAtt22AY.250.000012
ORF1ab/nsp12202V202VgtTgtC22AY.300.000791
ORF1ab/nsp12202V202VgtTgtC22AY.390.000049
ORF1ab/nsp12202V202AgTtgCt22AY.40.000003
ORF1ab/nsp12202V202VgtTgtC22AY.4.20.000043
ORF1ab/nsp12202V202VgtTgtC22AY.420.00008
ORF1ab/nsp12202V202VgtTgtC22AY.430.000009
ORF1ab/nsp12202V202IGttAtt22AY.430.000009
ORF1ab/nsp12202V202IGttAtt22AY.680.000547
ORF1ab/nsp12202V202delGTT---22AY.990.002099
ORF1ab/nsp12202V202AgTtgCt22B.1.1.1700.002494
ORF1ab/nsp12202V202IGttAtt22B.1.1.70.000002
ORF1ab/nsp12202V202VgtTgtC22B.1.177.870.001456
ORF1ab/nsp12202V202IGttAtt22B.1.2580.000133
ORF1ab/nsp12202V202VgtTgtA22B.1.36.290.001035
ORF1ab/nsp12202V202IGttAtt22B.1.5090.001732
ORF1ab/nsp12202V202delGTT---22B.1.5250.000226
ORF1ab/nsp12202V202IGttAtt22B.1.617.20.000008
ORF1ab/nsp12202V202del1gTtg-t22B.1.6270.00404
ORF1ab/nsp12202V202FGttTtt11A.10.000282
ORF1ab/nsp12202V202del2gTTg--11All0
ORF1ab/nsp12202V202VgtTgtC11AY.1030.000006
ORF1ab/nsp12202V202VgtTgtC11AY.1060.000335
ORF1ab/nsp12202V202VgtTgtG11AY.1170.000085
ORF1ab/nsp12202V202VgtTgtC11AY.1180.000063
ORF1ab/nsp12202V202VgtTgtC11AY.1200.000037
ORF1ab/nsp12202V202IGttAtt11AY.1210.000135
ORF1ab/nsp12202V202IGttAtt11AY.16.10.00047
ORF1ab/nsp12202V202AgTtgCt11AY.250.000006
ORF1ab/nsp12202V202del2gTTg--11AY.250.000006
ORF1ab/nsp12202V202VgtTgtC11AY.290.000016
ORF1ab/nsp12202V202IGttAtt11AY.30.00001
ORF1ab/nsp12202V202del1Gtt-tt11AY.40.000002
ORF1ab/nsp12202V202FGttTtt11AY.420.00004
ORF1ab/nsp12202V202IGttAtt11AY.420.00004
ORF1ab/nsp12202V202AgTtgCt11AY.430.000004
ORF1ab/nsp12202V202LGttCtt11AY.440.000006
ORF1ab/nsp12202V202VgtTgtA11AY.540.000095
ORF1ab/nsp12202V202VgtTgtC11AY.570.000656
ORF1ab/nsp12202V202FGttTtt11AY.60.000041
ORF1ab/nsp12202V202delGTT---11AY.650.000533
ORF1ab/nsp12202V202FGttTtt11AY.650.000533
ORF1ab/nsp12202V202FGttTtt11AY.660.00107
ORF1ab/nsp12202V202IGttAtt11AY.690.000187
ORF1ab/nsp12202V202delGTT---11AY.90.000068
ORF1ab/nsp12202V202VgtTgtG11AY.99.20.000092
ORF1ab/nsp12202V202IGttAtt11AY.99.20.000092
ORF1ab/nsp12202V202FGttTtt11B0.000128
ORF1ab/nsp12202V202AgTtgCt11B0.000128
ORF1ab/nsp12202V202IGttAtt11B.10.000009
ORF1ab/nsp12202V202LGttCtt11B.10.000009
ORF1ab/nsp12202V202VgtTgtA11B.1.10.000018
ORF1ab/nsp12202V202LGttCtt11B.1.10.000018
ORF1ab/nsp12202V202delGTT---11B.1.1.10.000327
ORF1ab/nsp12202V202VgtTgtC11B.1.1.2140.000055
ORF1ab/nsp12202V202AgTtgCt11B.1.1.3150.008475
ORF1ab/nsp12202V202IGttAtt11B.1.1.370.000193
ORF1ab/nsp12202V202delGTT---11B.1.1.4090.002833
ORF1ab/nsp12202V202del1gTtg-t11B.1.160.110.005714
ORF1ab/nsp12202V202AgTtgCt11B.1.1770.000013
ORF1ab/nsp12202V202VgtTgtC11B.1.177.600.000218
ORF1ab/nsp12202V202GgTtgGt11B.1.20.000009
ORF1ab/nsp12202V202delGTT---11B.1.20.000009
ORF1ab/nsp12202V202FGttTtt11B.1.20.000009
ORF1ab/nsp12202V202FGttTtt11B.1.3330.010526
ORF1ab/nsp12202V202VgtTgtG11B.1.360.000146
ORF1ab/nsp12202V202VgtTgtC11B.1.36.160.001425
ORF1ab/nsp12202V202VgtTgtA11B.1.36.170.000494
ORF1ab/nsp12202V202FGttTtt11B.1.3960.000706
ORF1ab/nsp12202V202IGttAtt11B.1.4290.000024
ORF1ab/nsp12202V202VgtTgtC11B.1.4780.011765
ORF1ab/nsp12202V202VgtTgtG11B.1.5750.000303
ORF1ab/nsp12202V202del1gTtg-t11B.1.5960.000087
ORF1ab/nsp12202V202LGttCtt11B.1.6060.006024
ORF1ab/nsp12202V202GgTtgGt11B.1.617.20.000004
ORF1ab/nsp12202V202VgtTgtC11B.1.619.10.000641
ORF1ab/nsp12202V202VgtTgtA11B.1.6370.000073
ORF1ab/nsp12202V202FGttTtt11B.1.88.10.004808
ORF1ab/nsp12202V202delGTT---11B.340.013699
ORF1ab/nsp12202V202VgtTgtA11D.20.000075
ORF1ab/nsp12202V202VgtTgtA11P.10.000016
ORF1ab/nsp12202V202AgTtgCt11P.20.000187